Discovery Early Career Researcher Award - Grant ID: DE190100805
Funder
Australian Research Council
Funding Amount
$382,656.00
Summary
Phylogenetic methods for genome surveillance of microbial pathogens. This project aims to develop phylogenetic approaches to harness the potential evolution of bacterial and virus pathogens data and to improve early detection of infectious outbreaks. Genome surveillance programs consist in routine sequencing of particular organisms to track their evolution over time. Such programs currently exist for important bacterial and virus pathogens. This project expects to develop computational methods t ....Phylogenetic methods for genome surveillance of microbial pathogens. This project aims to develop phylogenetic approaches to harness the potential evolution of bacterial and virus pathogens data and to improve early detection of infectious outbreaks. Genome surveillance programs consist in routine sequencing of particular organisms to track their evolution over time. Such programs currently exist for important bacterial and virus pathogens. This project expects to develop computational methods to improve our understanding of pathogen outbreak emergence and infectious spread using genome data. This project will expand our knowledge base and research capability in the evolution and epidemiology of infectious agents, and aid in the prevention and control strategies of infectious disease benefiting the research priorities of food and health.Read moreRead less
Nowcasting outbreaks leveraging genomic and epidemiological data. This project aims to inform outbreak response planning by developing new models of infectious disease outbreaks. The project expects to generate new knowledge on the processes driving ongoing outbreaks including those of the novel coronavirus (COVID-19) and African swine fever by integrating the latest advances in Bayesian outbreak inference alongside unique simulation approaches. Expected outcomes should include a shift in how mo ....Nowcasting outbreaks leveraging genomic and epidemiological data. This project aims to inform outbreak response planning by developing new models of infectious disease outbreaks. The project expects to generate new knowledge on the processes driving ongoing outbreaks including those of the novel coronavirus (COVID-19) and African swine fever by integrating the latest advances in Bayesian outbreak inference alongside unique simulation approaches. Expected outcomes should include a shift in how models are developed and used to inform the response to outbreaks as they unfold. This should enable more rapid outbreak containment in Australia and overseas, leading to reduced impacts on public and animal health, and associated industries.Read moreRead less
A new universal mechanism controlling body proportions in animals. This project aims to establish that a recently-discovered mechanism, the inhibitory cascade, determines the basic proportions of appendages and body segments in a diverse range of animal groups, particularly vertebrates and arthropods. The goals of the project are to reveal the molecular mechanisms in mice and insects, and build computer simulations to show how to manipulate the control of development by the inhibitory cascade. T ....A new universal mechanism controlling body proportions in animals. This project aims to establish that a recently-discovered mechanism, the inhibitory cascade, determines the basic proportions of appendages and body segments in a diverse range of animal groups, particularly vertebrates and arthropods. The goals of the project are to reveal the molecular mechanisms in mice and insects, and build computer simulations to show how to manipulate the control of development by the inhibitory cascade. The project should benefit bioengineering by establishing control mechanisms for the manipulation and regeneration of teeth and limbs.Read moreRead less
Mutual sexual selection and sperm competition in the black swan. The proposed research is curiosity-driven and therefore its main benefit is in enhancing our understanding of the evolutionary processes that shape our natural environment. The proliferation of 'natural history' television programmes, magazines and books demonstrates the very substantial national interest in these topics. The Black Swan is a well-known bird of particular public affection. Its status as a national iconic symbol h ....Mutual sexual selection and sperm competition in the black swan. The proposed research is curiosity-driven and therefore its main benefit is in enhancing our understanding of the evolutionary processes that shape our natural environment. The proliferation of 'natural history' television programmes, magazines and books demonstrates the very substantial national interest in these topics. The Black Swan is a well-known bird of particular public affection. Its status as a national iconic symbol has been reflected in the degree of local and general community interest and involvement in our research in Ballarat to date.Read moreRead less
Sexual signalling and parental care: A life-history perspective. I will use a fish, the Australian desert goby, to gain pivotal insights into male reproductive investment. Under-appreciated as potential study subjects, desert gobies are ideal because males must make important reproductive decisions regarding how much effort to spend on mate attraction and parental care but, importantly, they must do so within the constraints imposed by desert-living. The likely impact of my work in the field of ....Sexual signalling and parental care: A life-history perspective. I will use a fish, the Australian desert goby, to gain pivotal insights into male reproductive investment. Under-appreciated as potential study subjects, desert gobies are ideal because males must make important reproductive decisions regarding how much effort to spend on mate attraction and parental care but, importantly, they must do so within the constraints imposed by desert-living. The likely impact of my work in the field of behavioural ecology will improve Australia's research capacity and profile. By using an Australian species, my research will also raise awareness and understanding of extraordinary fishes living in habitats vulnerable to human impact. Read moreRead less
Continuous tooth replacement in mammals: revealing the fundamental processes in tooth generation and movement. This project will investigate how molar teeth are made in mammals by examining the nabarlek, or little rock-wallaby, which is one of a handful of mammals that is able to regenerate new molars throughout its life. These new teeth migrate through the bone in order to move into the correct position in the mouth. By investigating two well-studied organisms, the mouse and the tammar wallaby, ....Continuous tooth replacement in mammals: revealing the fundamental processes in tooth generation and movement. This project will investigate how molar teeth are made in mammals by examining the nabarlek, or little rock-wallaby, which is one of a handful of mammals that is able to regenerate new molars throughout its life. These new teeth migrate through the bone in order to move into the correct position in the mouth. By investigating two well-studied organisms, the mouse and the tammar wallaby, as well as the nabarlek itself, the developmental processes and genes involved in molar generation and movement will be revealed. This project will integrate findings in regenerative medicine, evolutionary biology, materials engineering and palaeontology to reveal the mechanisms and origins of this astounding capability.Read moreRead less
Unravelling the role of heteroplasmy in mitochondrial adaptation. This project aims to unravel the evolutionary implications of heteroplasmy – a scenario in which multiple mitochondrial DNA genotypes exist in one individual. Recent studies indicate heteroplasmy is widespread, and can be caused by paternal transmission of mtDNA. But the effects of heteroplasmy on evolutionary processes remain unknown. Leveraging state-of-the-art methods, this project expects to generate new knowledge in the areas ....Unravelling the role of heteroplasmy in mitochondrial adaptation. This project aims to unravel the evolutionary implications of heteroplasmy – a scenario in which multiple mitochondrial DNA genotypes exist in one individual. Recent studies indicate heteroplasmy is widespread, and can be caused by paternal transmission of mtDNA. But the effects of heteroplasmy on evolutionary processes remain unknown. Leveraging state-of-the-art methods, this project expects to generate new knowledge in the areas of evolutionary ecology and mitochondrial genetics. Expected outcomes include discoveries that advance understanding of fundamental biological processes, and student training. Expected benefits include strengthening of Australia’s research capacity, by setting the research agenda in this rapidly developing field.Read moreRead less
Sexual conflict in Zeus Bugs. Australia is a leading nation in the field of evolutionary biology. This is in part due to the diverse and often bizarre plants and animals found on this continent. Our preliminary work on the Australian Zeus bug yielded exciting and fascinating results that created considerable national and international interest within the biological community and among the general population. The proposed project is likely to attract similar attention; will contribute to undergra ....Sexual conflict in Zeus Bugs. Australia is a leading nation in the field of evolutionary biology. This is in part due to the diverse and often bizarre plants and animals found on this continent. Our preliminary work on the Australian Zeus bug yielded exciting and fascinating results that created considerable national and international interest within the biological community and among the general population. The proposed project is likely to attract similar attention; will contribute to undergraduate research training and will ensure that Australia maintains its high profile and international reputation in the future. Read moreRead less
Evolutionary limits. This project aims to understand the processes that limit adaptation to rapid environmental change. Adaption to rapid environmental change determines population persistence. Species with restricted distributions may lack the genetic variation necessary to adapt to changing environments, although they represent the vast majority of biodiversity. Understanding why they lack the necessary genetic variation for adaptation is important for identifying and managing vulnerable biolo ....Evolutionary limits. This project aims to understand the processes that limit adaptation to rapid environmental change. Adaption to rapid environmental change determines population persistence. Species with restricted distributions may lack the genetic variation necessary to adapt to changing environments, although they represent the vast majority of biodiversity. Understanding why they lack the necessary genetic variation for adaptation is important for identifying and managing vulnerable biological systems. This project will empirically determine the contribution of mutations to key traits to better understand what limits evolutionary adaptation. Better prediction of extinction risk should inform conservation and biodiversity management.Read moreRead less
Adaptation by DNA download: Experimental evolution of a pangenome. This project aims to understand how microbes adapt when they can directly “download" new genes from their surrounding environment, or from other types of bacteria. Specifically, the proposed research will carry out the largest-scale measurements of the fitness effects of horizontally transferred genetic variation, to discover how each of these genes interacts with the environment, and with other genes. This project is expected to ....Adaptation by DNA download: Experimental evolution of a pangenome. This project aims to understand how microbes adapt when they can directly “download" new genes from their surrounding environment, or from other types of bacteria. Specifically, the proposed research will carry out the largest-scale measurements of the fitness effects of horizontally transferred genetic variation, to discover how each of these genes interacts with the environment, and with other genes. This project is expected to generate new knowledge in the fields of microbial evolution and microbiome science. The benefits of this cutting-edge research will be to strengthen Australia’s research capacity in these rapidly developing fields and to train a new generation of interdisciplinary scientists.Read moreRead less