Why do only some exotics become invasive? Combining ecological and genomic approaches to address alternative hypotheses in a recent Australian weed. This project will specifically test alternative hypotheses about how weeds become invasive. As invasive weeds affect both agricultural and native ecosystems equally, research on understanding the mechanisms of weed invasion is critical. Outcomes will benefit Australia by allowing better prioritisation of management against exotic plants already i ....Why do only some exotics become invasive? Combining ecological and genomic approaches to address alternative hypotheses in a recent Australian weed. This project will specifically test alternative hypotheses about how weeds become invasive. As invasive weeds affect both agricultural and native ecosystems equally, research on understanding the mechanisms of weed invasion is critical. Outcomes will benefit Australia by allowing better prioritisation of management against exotic plants already in the country by providing predictive tools to estimate likelihood of spread. For formal Pest Risk Analysis by regulators (eg Biosecurity Australia), our project will provide genomic tools by which the potential weediness of a regulated plant can be assessed through genetic screening, and forms part of an international effort to identify 'weedy genes'. Read moreRead less
The functional genomics of locust migratory behaviour. Unravelling the molecular genetic basis of locust migratory behaviour will place Australia at the forefront of international biological research and simultaneously contribute to the development of new and safer ways to manage these notorious agricultural pests. We will use genomics and gene expression analyses to identify the suite of genes involved in the behavioural changes that catalyse locust swarm formation and migration. This collabor ....The functional genomics of locust migratory behaviour. Unravelling the molecular genetic basis of locust migratory behaviour will place Australia at the forefront of international biological research and simultaneously contribute to the development of new and safer ways to manage these notorious agricultural pests. We will use genomics and gene expression analyses to identify the suite of genes involved in the behavioural changes that catalyse locust swarm formation and migration. This collaborative study will enhance international relations with China, foster the development of gene-focused locust control strategies, and provide an exemplar study of an important and complex problem faced by Australia and international community.Read moreRead less
Evolutionary genetics of the immune system in social insects. Insects possess efficient innate immunity against pathogens, but social insects are suggested to be vulnerable due to their packed colonies of related individuals. We predict that pathogen pressure varies with life history and microhabitat details, and that this variation will be reflected in the molecular evolutionary rates of immune system genes. Sequence information will be obtained to test these predictions. The results should ....Evolutionary genetics of the immune system in social insects. Insects possess efficient innate immunity against pathogens, but social insects are suggested to be vulnerable due to their packed colonies of related individuals. We predict that pathogen pressure varies with life history and microhabitat details, and that this variation will be reflected in the molecular evolutionary rates of immune system genes. Sequence information will be obtained to test these predictions. The results should be of widespread interest as reflecting the importance of pathogens and life pattern, and increase our knowledge of insect immune systems, potentially enabling circumvention of pest defenses and better protection of beneficial species.Read moreRead less
Evolutionary immunology of social insects. Social insects are particularly abundant in Australia. They live in a wide range of habitats with social systems differing greatly in size and structure. They are both ecologically and economically important because they form a large part of terrestrial ecosystems and control much of the energy flow. Their immune system resembles the immune system of humans. Finding how the social insect immune system evolves will have the potential to help us manag ....Evolutionary immunology of social insects. Social insects are particularly abundant in Australia. They live in a wide range of habitats with social systems differing greatly in size and structure. They are both ecologically and economically important because they form a large part of terrestrial ecosystems and control much of the energy flow. Their immune system resembles the immune system of humans. Finding how the social insect immune system evolves will have the potential to help us manage them better, and yield functional insights into the human innate immune system. Placing the observed patterns in context also involves study of the associated microbes, finds how social insects interact with this important part of the environment, and may assist in land management.Read moreRead less
Intra-genomic conflict and the evolution of sexually selected traits. The dynamics of sexual selection may prevent the simultaneous optimization of traits shared by the sexes, or of different traits within each sex. This proposal focuses on the consequences of these conflicts for phenotypic and genomic evolution. First, I will compare selection acting on a sexually dimorphic trait in males and females. Second, I will use artificial selection to create a novel sexually dimorphic trait, and track ....Intra-genomic conflict and the evolution of sexually selected traits. The dynamics of sexual selection may prevent the simultaneous optimization of traits shared by the sexes, or of different traits within each sex. This proposal focuses on the consequences of these conflicts for phenotypic and genomic evolution. First, I will compare selection acting on a sexually dimorphic trait in males and females. Second, I will use artificial selection to create a novel sexually dimorphic trait, and track the evolutionary response. Third, I will investigate the link between two important fitness traits: body size and ageing rate. This work will enhance important on-going research in the laboratory of Robert Brooks (UNSW).Read moreRead less
Population growth, genetic variation and adaptation in two Caulerpa species in southeastern Australia. This project will examine factors that influence the population growth, reproduction, genetic variation and adaptation in two seaweeds; the invasive Caulerpa taxifolia and the possibly invasive C. filiformis. A combination of surveys, modelling, molecular genetics and field experiments will be undertaken to achieve this. The current ambiguity surrounding the status of C. filiformis as an inva ....Population growth, genetic variation and adaptation in two Caulerpa species in southeastern Australia. This project will examine factors that influence the population growth, reproduction, genetic variation and adaptation in two seaweeds; the invasive Caulerpa taxifolia and the possibly invasive C. filiformis. A combination of surveys, modelling, molecular genetics and field experiments will be undertaken to achieve this. The current ambiguity surrounding the status of C. filiformis as an invasive species in Australia will be addressed by comparing DNA sequences of Australian and African plants. This project will provide critical data for managing invasive species, but more broadly, increase the current understanding of their biology and the factors important in their population growth and adaptation.Read moreRead less
Sequencing and assembling microbial community metagenomes in real-time. This project aims to assemble metagenomes directly from environmental samples using nanopore sequencing. Short-read approaches to metagenomics cannot assemble mixed genomes from an environmental sample, so focus on describing which species and genes are present. Long-read nanopore sequencing enables the assembly of full genomes of multiple species in a sample. Assembling complete genomes in important resources such as water ....Sequencing and assembling microbial community metagenomes in real-time. This project aims to assemble metagenomes directly from environmental samples using nanopore sequencing. Short-read approaches to metagenomics cannot assemble mixed genomes from an environmental sample, so focus on describing which species and genes are present. Long-read nanopore sequencing enables the assembly of full genomes of multiple species in a sample. Assembling complete genomes in important resources such as water and soil should lead to deeper understanding of the dynamics, variation and transfer of genetic material within these resources’ microbial communities, strategies to manage microbial diversity, and improved productivity and long-term sustainability for these resources.Read moreRead less
Population dynamics and genetic variation of plants with contrasting fire responses. We combine the traditional concerns of population viability analyses with the modern techniques of DNA fingerprinting for precise genotyping of individual plants and their seeds. We expect major breakthroughs in our understanding of how fire-killed species have survived thousands of years of frequent burning by Aborigines (by identifying seeds dispersed long distances from burnt parents); how paternity of offspr ....Population dynamics and genetic variation of plants with contrasting fire responses. We combine the traditional concerns of population viability analyses with the modern techniques of DNA fingerprinting for precise genotyping of individual plants and their seeds. We expect major breakthroughs in our understanding of how fire-killed species have survived thousands of years of frequent burning by Aborigines (by identifying seeds dispersed long distances from burnt parents); how paternity of offspring changes over the lifespan of plants which retain their seeds for many years; at what age within-plant genetic variation is at a maximum as a guide to optimal fire management; and the extent that deleterious somatic mutations explain low seed set among long-lived species.Read moreRead less
Sex, parthenogenesis and adaptation: a novel laboratory 'natural selection' experiment testing the adaptive significance of sexual and asexual reproduction. One of the greatest challenges for evolutionary biology is explaining the widespread occurrence of sexual reproduction. Many theoretical models show some inherent benefits of sex, however these models make assumptions that little or no empirical data exists for. Using a novel phenomenon found in the parasitoid wasp genus Trichogramma, I will ....Sex, parthenogenesis and adaptation: a novel laboratory 'natural selection' experiment testing the adaptive significance of sexual and asexual reproduction. One of the greatest challenges for evolutionary biology is explaining the widespread occurrence of sexual reproduction. Many theoretical models show some inherent benefits of sex, however these models make assumptions that little or no empirical data exists for. Using a novel phenomenon found in the parasitoid wasp genus Trichogramma, I will investigate the adaptive significance of sexual and asexual reproduction in a laboratory natural selection experiment and therefore directly test the theory for the evolution and maintenance of sex. This will be the first such test in a higher organism.Read moreRead less
The Maintenance of Genetic Variation by Antagonistic Sexual Selection. The principle outcomes of my proposed research are fundamental knowledge, training of young scientists and the improvement of Australia's research capacity and profile. My research will have a major impact on two major branches of evolutionary biology that are seldom integrated - sexual selection and quantitative genetics. My research will enable me to establish myself as an independent researcher. Moreover, my collaborations ....The Maintenance of Genetic Variation by Antagonistic Sexual Selection. The principle outcomes of my proposed research are fundamental knowledge, training of young scientists and the improvement of Australia's research capacity and profile. My research will have a major impact on two major branches of evolutionary biology that are seldom integrated - sexual selection and quantitative genetics. My research will enable me to establish myself as an independent researcher. Moreover, my collaborations with one of the leading research laboratories in the UK, will teach me several modern techniques that I can disseminate to Australian students participating on the proposed project.Read moreRead less