ARC Centre for Kangaroo Genome. In this Australian-led Kangaroo Genome Project, we will map and characterize the tammar wallaby genome at the molecular level. Marsupial genomes are uniquely valuable because they provide comparisons that reveal new human genes, regulatory sequences and marsupial-specific genes. These will deliver new products and information useful for medicine, industry, agriculture and conservation. We will construct integrated genetic and physical maps of the genome, clone the ....ARC Centre for Kangaroo Genome. In this Australian-led Kangaroo Genome Project, we will map and characterize the tammar wallaby genome at the molecular level. Marsupial genomes are uniquely valuable because they provide comparisons that reveal new human genes, regulatory sequences and marsupial-specific genes. These will deliver new products and information useful for medicine, industry, agriculture and conservation. We will construct integrated genetic and physical maps of the genome, clone the whole genome as large inserts in BAC vectors, and build a "golden path" with minimal overlap. We will construct libraries of expressed genes from tammar tissues and array them for use in analysing gene expression.Read moreRead less
Developmental regulation of plant mitochondrial genome structure and copy number. Recombination is a major driving force behind mitochondrial DNA evolution and is responsible for the occurrence of cytoplasmic male sterile plants that are used by plant breeders to obtain high yield hybrids. A better understanding of the mechanisms that underlie mitochondrial and chloroplast genome maintenance and segregation will be a major fundamental scientific advance that will permit an integrated picture of ....Developmental regulation of plant mitochondrial genome structure and copy number. Recombination is a major driving force behind mitochondrial DNA evolution and is responsible for the occurrence of cytoplasmic male sterile plants that are used by plant breeders to obtain high yield hybrids. A better understanding of the mechanisms that underlie mitochondrial and chloroplast genome maintenance and segregation will be a major fundamental scientific advance that will permit an integrated picture of the interactions between the three plant genomes (nuclear, mitochondrial and chloroplastic). It is also a pre-requisite for the future manipulation of the cytoplasmic genomes leading to new ways to develop varieties with modified cytoplasms.Read moreRead less
LATERAL GENE TRANSFER, GENOME EVOLUTION AND THE EMERGENCE OF NEW DISEASES CAUSED BY FUNGAL PATHOGENS IN THE PLEOSPORALES. Normal evolution involves the transfer of genes within species. The modest variation between progeny powers natural selection. Lateral gene transfer is the movement of genetic material between species. It allows for large evolutionary steps. Although common in bacteria, it has rarely been described convincingly in higher organisms such as fungi, plants or animals. We have evi ....LATERAL GENE TRANSFER, GENOME EVOLUTION AND THE EMERGENCE OF NEW DISEASES CAUSED BY FUNGAL PATHOGENS IN THE PLEOSPORALES. Normal evolution involves the transfer of genes within species. The modest variation between progeny powers natural selection. Lateral gene transfer is the movement of genetic material between species. It allows for large evolutionary steps. Although common in bacteria, it has rarely been described convincingly in higher organisms such as fungi, plants or animals. We have evidence that one group of fungal pathogens is particularly adept at acquiring new genes that enable them to cause new diseases. We will determine the mechanism and frequency of gene transfer in this group. The work had fundamental significance in evolutionary biology, in the emergence of new diseases and in the use of genetically-modified organisms.Read moreRead less
Establishment of the Australian Cane Toad Genome Program. The Cane Toad is one of Australia's greatest environmental menaces, and is in the top 100 of the "World's Worst invader species". Over a billion toads infest Northern Australia, and they will soon invade WA and move further into NSW. Their poisons and voracious appetite could make many native mammals, birds and reptiles extinct. The only possibility to eradicate the Toad is by biological control, but there is no known control agent. We wi ....Establishment of the Australian Cane Toad Genome Program. The Cane Toad is one of Australia's greatest environmental menaces, and is in the top 100 of the "World's Worst invader species". Over a billion toads infest Northern Australia, and they will soon invade WA and move further into NSW. Their poisons and voracious appetite could make many native mammals, birds and reptiles extinct. The only possibility to eradicate the Toad is by biological control, but there is no known control agent. We will identify the 'Toad's Achilles' heel' against which control agents can be developed. We can do this by identifying every Toad gene. This project forms the first step to this goal by establishing the Australian Cane Toad Genome Program. Toad control will help preserve Australia's unique natural heritage.Read moreRead less
Exploring the gene regulation networks governing mitochondrial biogenesis in Arabidopsis. Mitochondria, subcellular organelles that perform many functions indispensable to plant growth and productivity, are dynamic compartments whose protein complement changes dramatically during plant development and under stress. Yet, the cellular processes that regulate the production of these organelles are virtually unknown. By combining conventional approaches with an extremely powerful holistic method for ....Exploring the gene regulation networks governing mitochondrial biogenesis in Arabidopsis. Mitochondria, subcellular organelles that perform many functions indispensable to plant growth and productivity, are dynamic compartments whose protein complement changes dramatically during plant development and under stress. Yet, the cellular processes that regulate the production of these organelles are virtually unknown. By combining conventional approaches with an extremely powerful holistic method for simultaneously examining the expression patterns of every gene in the model plant Arabidopsis, this project will identify proteins that regulate mitochondrial biosynthesis and uncover the gene networks that these proteins control. The project outcomes will provide new opportunities for the rational manipulation of plant growth and productivity.Read moreRead less
Arabidopsis DNA binding proteins that control transcription of its mitochondrial genome. The increases in crop output and quality needed to drive the agricultural sector of Australia's future economy will arise from knowledge gained by combining traditional methods and the type of cutting-edge research that identifies plant mitochondrial DNA-binding proteins and their sites of action. Mitochondria are fundamental to many agronomically important traits, including plant growth, fruit ripening and ....Arabidopsis DNA binding proteins that control transcription of its mitochondrial genome. The increases in crop output and quality needed to drive the agricultural sector of Australia's future economy will arise from knowledge gained by combining traditional methods and the type of cutting-edge research that identifies plant mitochondrial DNA-binding proteins and their sites of action. Mitochondria are fundamental to many agronomically important traits, including plant growth, fruit ripening and plant stress and disease defence. Opportunities for the rational manipulation of these and hitherto undiscovered traits will come from new knowledge generated by this project, which will develop and use frontier technologies that will keep Australia at the forefront of international research into mitochondrial structure and function.Read moreRead less
Protein modifications in plant mitochondria: towards functional proteomics. Energy production within plants in cellular structures called mitochondria is vital for their growth and development and is central to the early success of germinating and growing seedlings. This project intends to analyse mitochondria within plants using state of the art instrumentation and technologies. The findings from this research have the potential to directly flow into the plant biotechnology industry and could a ....Protein modifications in plant mitochondria: towards functional proteomics. Energy production within plants in cellular structures called mitochondria is vital for their growth and development and is central to the early success of germinating and growing seedlings. This project intends to analyse mitochondria within plants using state of the art instrumentation and technologies. The findings from this research have the potential to directly flow into the plant biotechnology industry and could assist the future development of Australian agriculture through genetic improvements. The expertise developed by this work will ensure that Australia is well placed to exploit future advances in this field and to further generate the development of novel biotechnological applications in agriculture.Read moreRead less
Discovery of the molecular mode of action of karrikins in plants. Karrikins are a newly-discovered family of naturally-occurring plant growth regulators that stimulate seed germination and seedling vigour. They were discovered in smoke and while they are centrally important in fire ecology they have far wider significance since species from non-fire-prone regions also respond to karrikins. Our research will discover how karrikins work at the molecular level in plant cells. Our discoveries will b ....Discovery of the molecular mode of action of karrikins in plants. Karrikins are a newly-discovered family of naturally-occurring plant growth regulators that stimulate seed germination and seedling vigour. They were discovered in smoke and while they are centrally important in fire ecology they have far wider significance since species from non-fire-prone regions also respond to karrikins. Our research will discover how karrikins work at the molecular level in plant cells. Our discoveries will be applied to improve growth of crop plants, to stimulate germination of weeds so that they can be eradicated, and in restoration ecology to revegetate degraded land such as minesites. Australia's world-leading position in this new important research area will be enhanced.Read moreRead less
Plant Mitochondrial Signalling and Regulation. Plant energy production is essential for successful growth and development and is essential for processes such as seedling establishment and germination. This research project intends to expand our understanding of energy regulation within the plant using advanced technologies. Such studies can provide direct benefits to the Australian agriculture community through novel targets for genetic improvements. The capacity to create such advantages is eco ....Plant Mitochondrial Signalling and Regulation. Plant energy production is essential for successful growth and development and is essential for processes such as seedling establishment and germination. This research project intends to expand our understanding of energy regulation within the plant using advanced technologies. Such studies can provide direct benefits to the Australian agriculture community through novel targets for genetic improvements. The capacity to create such advantages is economically vital for the industry and the development of such expertise within Australia will ensure we are well placed to exploit future advances in agricultural improvements and provide the capacity to further generate novel biotechnological applications.Read moreRead less
Probing JNK MAPK function with peptide inhibitors. It has generally been accepted that the JNK MAPK family of protein kinases is rapidly and potently activated following the exposure of mammalian cells to stresses and cytokines. However, their biological role has remained controversial. We believe that this problem reflects the lack of a generally applicable and specific JNK MAPK inhibitor. In this project we continue our characterisation of a small peptide inhibitor developed in our laboratori ....Probing JNK MAPK function with peptide inhibitors. It has generally been accepted that the JNK MAPK family of protein kinases is rapidly and potently activated following the exposure of mammalian cells to stresses and cytokines. However, their biological role has remained controversial. We believe that this problem reflects the lack of a generally applicable and specific JNK MAPK inhibitor. In this project we continue our characterisation of a small peptide inhibitor developed in our laboratories. We aim to determine its mechanism of inhibition, the specificity of interaction, and to evolve more effective inhibitors. With these new inhibitors, we can effectively address the biological roles of these kinases.Read moreRead less