Analysing and modelling molecular rate variation among nuclear and mitochondrial genomes. My research will have important practical benefits for bioinformaticians and evolutionary biologists, because existing analytical methods will be rigorously tested and new tools will be developed. Australia has a comparatively high concentration of researchers in this field, so my research will foster domestic collaboration and import international expertise. The research will provide important insights int ....Analysing and modelling molecular rate variation among nuclear and mitochondrial genomes. My research will have important practical benefits for bioinformaticians and evolutionary biologists, because existing analytical methods will be rigorously tested and new tools will be developed. Australia has a comparatively high concentration of researchers in this field, so my research will foster domestic collaboration and import international expertise. The research will provide important insights into the rates and patterns of genetic changes associated with domestication, and into variation in evolutionary rates among the primate ancestors of humans. In addition to developing new software, which will be made publicly available, I will develop new evolutionary models to supplement existing software packages. Read moreRead less
Assessing absolute sustainability of global cities. The project aims to create a quantitative modelling framework for assessing the absolute sustainability of cities by combining global multi-region input-output analysis with the 'safe and just space' concept for human development. The model will allow assessment of the full supply chain environmental and social impacts of urban economic activities against biophysical planetary limits as well as social foundation thresholds defined in the litera ....Assessing absolute sustainability of global cities. The project aims to create a quantitative modelling framework for assessing the absolute sustainability of cities by combining global multi-region input-output analysis with the 'safe and just space' concept for human development. The model will allow assessment of the full supply chain environmental and social impacts of urban economic activities against biophysical planetary limits as well as social foundation thresholds defined in the literature. The project will advance sustainability science methodology and will greatly benefit worldwide initiatives for urban sustainability. Case studies on Australian cities will assess where interventions can be most practically, realistically and effectively implemented.Read moreRead less
Prediction, inference and their application to modelling correlated data. This project aims to create new, improved methods for prediction and making inference about predictions for a variety of correlated data types through inventing sophisticated and novel resampling schemes such as the generalised fast bootstrap and repeated partial permutation. The research will impact on both the theory and practice of statistics and on substantive fields which use mixed or compositional models to analyse d ....Prediction, inference and their application to modelling correlated data. This project aims to create new, improved methods for prediction and making inference about predictions for a variety of correlated data types through inventing sophisticated and novel resampling schemes such as the generalised fast bootstrap and repeated partial permutation. The research will impact on both the theory and practice of statistics and on substantive fields which use mixed or compositional models to analyse dependent data. This will be a significant improvement in the assessment and stability of statistical models in areas such as social, ecological and geological sciences.Read moreRead less
Planet Chicken: Chemical Entanglements in Asia's Poultry Boom . This project aims to study the effects of Asia’s rapidly expanding chicken meat industry on environmental degradation, social inequality, public health and animal welfare. Agricultural chemicals and veterinary drugs saturate this industry, with little regulation or data on types, quantities and applications. Deploying interdisciplinary methods at key nodes of the chicken value chain in India, Thailand and Vietnam, this study will 1) ....Planet Chicken: Chemical Entanglements in Asia's Poultry Boom . This project aims to study the effects of Asia’s rapidly expanding chicken meat industry on environmental degradation, social inequality, public health and animal welfare. Agricultural chemicals and veterinary drugs saturate this industry, with little regulation or data on types, quantities and applications. Deploying interdisciplinary methods at key nodes of the chicken value chain in India, Thailand and Vietnam, this study will 1) examine practices and market structures that shape chemical use and 2) uncover chemical presence and socio-ecological impacts. The project intends to expose how toxicity, biodiversity, and health interact with global food systems and to propose interventions for effective governance of factory farming in Asia.Read moreRead less
Dimension reduction and model selection for statistically challenging data. This project aims to develop a deep theoretical understanding of the relationship between various dimension reduction and model selection methods used in statistical model building, and then use this understanding to develop new, improved methods of model building for statistically challenging data. The research will impact on both the theory and practice of statistics, and on substantive fields which collect and analyse ....Dimension reduction and model selection for statistically challenging data. This project aims to develop a deep theoretical understanding of the relationship between various dimension reduction and model selection methods used in statistical model building, and then use this understanding to develop new, improved methods of model building for statistically challenging data. The research will impact on both the theory and practice of statistics, and on substantive fields which collect and analyse these kinds of data. This will provide a significant improvement in the statistical model building in areas such as epidemiology, chemical and ecological sciences. The project is timely because of the increasing collection of large-dimensional, complex, correlated data sets in these and many other fields.Read moreRead less
Genomic signatures of adaptive diversification in woodland Eucalyptus. This project aims to map the sources of adaptive alleles underlying diversification is to reveal insights into the mechanisms of speciation. The source of the raw material for evolution can have significant impacts on the speed with which populations can adapt. An emerging pattern in speciation research is the importance of ancient alleles and introgressed genes, which differ in the genomic signatures left by selection. Eucal ....Genomic signatures of adaptive diversification in woodland Eucalyptus. This project aims to map the sources of adaptive alleles underlying diversification is to reveal insights into the mechanisms of speciation. The source of the raw material for evolution can have significant impacts on the speed with which populations can adapt. An emerging pattern in speciation research is the importance of ancient alleles and introgressed genes, which differ in the genomic signatures left by selection. Eucalyptus offers a unique opportunity to explore these modes of evolution using the latest genomic tools. Improving our understanding of adaptation and genetic variation in woodland eucalypts is expected to make a significant contribution to their conservation, management and restoration.Read moreRead less
Governing harmful commodities: the case of ultra-processed foods. This project aims to generate new knowledge on how to influence public policy in order to reduce the supply and consumption of a health-harming commodity, ultra-processed foods. Using governance theory and qualitative techniques the project intends to identify the actors who are influential in the three key policy areas of trade, taxation and marketing and who affect the consumption of these foods in Australia, Thailand and Fiji. ....Governing harmful commodities: the case of ultra-processed foods. This project aims to generate new knowledge on how to influence public policy in order to reduce the supply and consumption of a health-harming commodity, ultra-processed foods. Using governance theory and qualitative techniques the project intends to identify the actors who are influential in the three key policy areas of trade, taxation and marketing and who affect the consumption of these foods in Australia, Thailand and Fiji. Expected outcomes include strategies for pursuing these different actors’ interests and evidence that can help institutions to promote better policies. Intended benefits include better nutrition outcomes in Australia, Thailand and Fiji.Read moreRead less
Do chromosomal rearrangements drive genomic evolution and speciation? This project aims to gain an understanding of the processes driving speciation using the internationally recognised and uniquely Australian rock-wallaby model system, where speciation appears to be caught in the act. Speciation is a fundamental evolutionary process, yet one that is not well understood. The project plans to use recent advances in marsupial genomics, bioinformatics, cytogenetics and epigenetics to determine the ....Do chromosomal rearrangements drive genomic evolution and speciation? This project aims to gain an understanding of the processes driving speciation using the internationally recognised and uniquely Australian rock-wallaby model system, where speciation appears to be caught in the act. Speciation is a fundamental evolutionary process, yet one that is not well understood. The project plans to use recent advances in marsupial genomics, bioinformatics, cytogenetics and epigenetics to determine the role that chromosome rearrangements play in the speciation process. This may provide critical knowledge for understanding the process of speciation and for future decisions regarding the effective management of biodiversity.Read moreRead less
Does dynamic ecological change cause rapid evolution? This project aims to increase understanding of how Australia’s native biota responds to rapid environmental changes. Abrupt environmental change has the potential to drive rapid evolution, which may facilitate species persistence in the face of novel challenges. This project will use long-term genomic data to quantify rates of evolutionary change in species living in arid environments, whose populations fluctuate markedly in response to rainf ....Does dynamic ecological change cause rapid evolution? This project aims to increase understanding of how Australia’s native biota responds to rapid environmental changes. Abrupt environmental change has the potential to drive rapid evolution, which may facilitate species persistence in the face of novel challenges. This project will use long-term genomic data to quantify rates of evolutionary change in species living in arid environments, whose populations fluctuate markedly in response to rainfall variation. By measuring the pace of genomic change in these species, and the evolutionary processes driving that change, this project will reveal species’ evolutionary responses to major environmental fluctuations.Read moreRead less
Veteran suicide: investigating the historical and social dimensions . This project aims to address veteran suicide by conducting an historical and cultural analysis of the ways government, the military and the community have understood, governed, and serviced veterans from 1914-present. This project will generate new knowledge, moving beyond orthodox medical and cultural assessments to explore wider historical, cultural and sociological relations of veteran suicide, including civil military rela ....Veteran suicide: investigating the historical and social dimensions . This project aims to address veteran suicide by conducting an historical and cultural analysis of the ways government, the military and the community have understood, governed, and serviced veterans from 1914-present. This project will generate new knowledge, moving beyond orthodox medical and cultural assessments to explore wider historical, cultural and sociological relations of veteran suicide, including civil military relations, and the influence of the veteran sector and families and community. The project will develop an innovative survey that will form the foundation of a longitudinal social health and wellbeing dataset on veterans, and contribute to policy and service provision to reduce veteran suicide and improve their wellbeing.Read moreRead less