Linkage Infrastructure, Equipment And Facilities - Grant ID: LE0344009
Funder
Australian Research Council
Funding Amount
$300,000.00
Summary
South Australian Regional Facility for Molecular Evolution and Ecology. Adelaide and Flinders Universities and their partners, the South Australian Museum and the South Australian Research and Development Institute, seek to enhance the throughput and efficiency of molecular genotyping for the large amount of research undertaken in Adelaide in the general areas of molecular evolution and ecology, and to enhance long-term storage and accessibility of the valuable biological materials used for geno ....South Australian Regional Facility for Molecular Evolution and Ecology. Adelaide and Flinders Universities and their partners, the South Australian Museum and the South Australian Research and Development Institute, seek to enhance the throughput and efficiency of molecular genotyping for the large amount of research undertaken in Adelaide in the general areas of molecular evolution and ecology, and to enhance long-term storage and accessibility of the valuable biological materials used for genotyping. This will be achieved by developing a new fully integrated, jointly managed regional facility, that serves all relevant research groups in South Australia.Read moreRead less
Structural reorganization of the hymenopteran mitochondrial genome. This study will be the first detailed investigation of the evolution of mt genome reorganization, and as such it will identify the processes that shape the evolution of a molecule widely used to interpret phylogeny. A description of the processes that lead to mt genome reorganization will have a substantial impact on our understanding in two areas of mt biology; (1) the discovery of new molecular phenomena that impact on the or ....Structural reorganization of the hymenopteran mitochondrial genome. This study will be the first detailed investigation of the evolution of mt genome reorganization, and as such it will identify the processes that shape the evolution of a molecule widely used to interpret phylogeny. A description of the processes that lead to mt genome reorganization will have a substantial impact on our understanding in two areas of mt biology; (1) the discovery of new molecular phenomena that impact on the organization and evolution of this genome, and (2) the interpretation of its phylogenetic content. It will establish our research group as a leader in the field of evolutionary genetics. Training of high quality students, with exposure to international researchers, will be a significant component of this program.Read moreRead less
Efficient phylogenetic methods that manage the curse of genomic complexity. This project aims to develop new methods and software to infer the evolutionary history of organisms using genomic data. These new phylogenomic methods need to take account of the complexity of evolutionary processes and/or patterns in time (along the evolutionary tree) and space (along the genome). This project is significant because these methods must merge mathematics and statistics with High-Performance Computing to ....Efficient phylogenetic methods that manage the curse of genomic complexity. This project aims to develop new methods and software to infer the evolutionary history of organisms using genomic data. These new phylogenomic methods need to take account of the complexity of evolutionary processes and/or patterns in time (along the evolutionary tree) and space (along the genome). This project is significant because these methods must merge mathematics and statistics with High-Performance Computing to handle the huge quantities of genetic data and the complexity of evolution itself. An important expected outcome of this project will be the development and release of freely-available software that incorporates these new methods. This project expects to benefit scientists who need to infer phylogenies from genomic data. Read moreRead less
New Molecular Approaches to Comparative Phylogeography. Funds are requested to gather data to test new molecular and analytical approaches in the field of molecular phylogeography. We will generate phylogeographic hypotheses from mitochondrial and microsatellite DNA for six species and evaluate the utility of microsatellite data for the reconstruction of phylogeographic history. We will borrow powerful analytical techniques from the field of evolutionary ecology and use them in a completely nove ....New Molecular Approaches to Comparative Phylogeography. Funds are requested to gather data to test new molecular and analytical approaches in the field of molecular phylogeography. We will generate phylogeographic hypotheses from mitochondrial and microsatellite DNA for six species and evaluate the utility of microsatellite data for the reconstruction of phylogeographic history. We will borrow powerful analytical techniques from the field of evolutionary ecology and use them in a completely novel way to test hypotheses of microsatellite diversity. Our research is inter-disciplinary in that we will bridge the gap between molecular phylogenetics and molecular evolution and in so doing make a major advancement in this emerging field.Read moreRead less
Evolutionary, macroecological and phylogenetic patterns in Australasian freshwater crayfish. This project connects Australian systematists to a worldwide project that involves all of the world's living experts on freshwater crayfish evolution in a coordinated effort to answer some very important evolutionary questions. It involves a group of invertebrate animals that are not only readily recognisable, but which in Australia includes the world's largest and the world's most terrestrial crayfish s ....Evolutionary, macroecological and phylogenetic patterns in Australasian freshwater crayfish. This project connects Australian systematists to a worldwide project that involves all of the world's living experts on freshwater crayfish evolution in a coordinated effort to answer some very important evolutionary questions. It involves a group of invertebrate animals that are not only readily recognisable, but which in Australia includes the world's largest and the world's most terrestrial crayfish species. Information gained from the project will contribute to the management of crayfish biodiversity, identification of threatened species and tools to identify these prominent and important members of Australian freshwater ecosystems.Read moreRead less
Molecular phylogeny and biodiversity of the plant family Rutaceae: evidence for Australian-New Caledonian biogeography. The results will contribute biological evidence for geological models of the evolution of New Caledonia and the Southwest Pacific region. Analyses will also contribute to improvement of methods and data interpretation in the field of historical biogeography. The molecular phylogeny will be the foundation for a new predictive classification of Australian Rutaceae at the level ....Molecular phylogeny and biodiversity of the plant family Rutaceae: evidence for Australian-New Caledonian biogeography. The results will contribute biological evidence for geological models of the evolution of New Caledonia and the Southwest Pacific region. Analyses will also contribute to improvement of methods and data interpretation in the field of historical biogeography. The molecular phylogeny will be the foundation for a new predictive classification of Australian Rutaceae at the level of tribes and genera. Improved phylogenetic classification underpins the delivery of biodiversity research, goods and services in Australia. Outcomes of improved taxonomy include species identification for ecological studies, identification of rare species, geographic areas of high conservation value and plants for horticulture.Read moreRead less
Developing biogeographic know-how: Improving species divergence and dispersal estimations to examine geological and climatic evolutionary drivers. Anthropogenic activity over the last 150 years is now dramatically changing our global climate and ecosystems. The impact on biodiversity is already evident, and large-scale floral and faunal extinctions are predicted. This study unites a cohort of international experts in an interdisciplinary team to develop new molecular and mathematical methods to ....Developing biogeographic know-how: Improving species divergence and dispersal estimations to examine geological and climatic evolutionary drivers. Anthropogenic activity over the last 150 years is now dramatically changing our global climate and ecosystems. The impact on biodiversity is already evident, and large-scale floral and faunal extinctions are predicted. This study unites a cohort of international experts in an interdisciplinary team to develop new molecular and mathematical methods to expand our fundamental knowledge on how geological and global climate change have affected our world's species components and ecosystems in the past. This research is of environmental significance and global importance as it will improve our ability to predict how species behave under future predicted climate scenarios.Read moreRead less
A predictive phylogenetic classification for Australian acacias and their tropical legume relatives worldwide. The results of this project will provide the foundation for a new predictive classification of Australian acacias and their relatives, among tropical legumes. Improved phylogenetic classification will underpin the delivery of biodiversity research, goods and services in Australia and neighbouring tropical countries. Outcomes of improved taxonomy include species identification and spec ....A predictive phylogenetic classification for Australian acacias and their tropical legume relatives worldwide. The results of this project will provide the foundation for a new predictive classification of Australian acacias and their relatives, among tropical legumes. Improved phylogenetic classification will underpin the delivery of biodiversity research, goods and services in Australia and neighbouring tropical countries. Outcomes of improved taxonomy include species identification and species selection in various industries and environmental programs. Acacias and legumes are used in agro-forestry, as shade trees for crops, fuel wood, stock feed, nitrogen fixation, planting for land reclamation in arid and salinity-affected areas, and as new plantation timber products. Read moreRead less
Resolving the classification and evolutionary history of the eucalypts. This collaborative project addresses the need to achieve a stable classification of the eucalypts, Australia's most ecologically and commercially important trees. The industry partners are lead agencies with responsibility for classification and identification of biodiversity, delivering taxonomic knowledge for end-users. Despite molecular studies in the last decade, the phylogenetic relationships of a number of the major ....Resolving the classification and evolutionary history of the eucalypts. This collaborative project addresses the need to achieve a stable classification of the eucalypts, Australia's most ecologically and commercially important trees. The industry partners are lead agencies with responsibility for classification and identification of biodiversity, delivering taxonomic knowledge for end-users. Despite molecular studies in the last decade, the phylogenetic relationships of a number of the major subgroups of the eucalypts are unknown. We will sequence new regions of DNA and combine this with morphological data to resolve the relationships of the eucalypt lineages, and hence their classification. Phylogenetic analysis also aids identification of high-value areas for conservation of relictual species.Read moreRead less
Resolving the molecular phylogeny and classification of Australian acacias, a major biodiversity resource. This collaboration with the Royal Botanic Gardens Melbourne will resolve the phylogeny of Australia's largest group of flowering plants, the acacias, to form the basis of a new classification. With more than 960 species, Australian acacias are a major biodiversity resource yet their genetic diversity and evolutionary relationships are poorly known. We will determine the main taxonomic gro ....Resolving the molecular phylogeny and classification of Australian acacias, a major biodiversity resource. This collaboration with the Royal Botanic Gardens Melbourne will resolve the phylogeny of Australia's largest group of flowering plants, the acacias, to form the basis of a new classification. With more than 960 species, Australian acacias are a major biodiversity resource yet their genetic diversity and evolutionary relationships are poorly known. We will determine the main taxonomic groups and their relationships by sequencing the DNA of more than 300 species. Acacias are of ecological importance and of use in land reclamation, horticulture, and rural craftwood industries.
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