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Australian coastal health watch: Improved marine primary productivity estimates using advanced Fast Repetition Rate fluorometry. Primary productivity by marine phytoplankton directly controls global climate, supports fisheries and is an indicator of marine ecosystem health. Successful management of the world’s marine ecosystems rests on improving the accuracy with which primary productivity is measured and monitored. This internationally collaborative research program will develop a new sensor-b ....Australian coastal health watch: Improved marine primary productivity estimates using advanced Fast Repetition Rate fluorometry. Primary productivity by marine phytoplankton directly controls global climate, supports fisheries and is an indicator of marine ecosystem health. Successful management of the world’s marine ecosystems rests on improving the accuracy with which primary productivity is measured and monitored. This internationally collaborative research program will develop a new sensor-based approach – fast repetition rate fluorometry – to measure different phytoplankton groups that regulate primary productivity in Australia’s complex marine environments. Application of these measurements will enable more accurate monitoring of the status of Australia’s marine systems to inform ocean resource management decisions in order to safeguard marine ecosystem heath.Read moreRead less
Understanding algal bloom microbiome function to improve seafood safety. Current phytoplankton ecological theory is derived primarily from lab cultures, but in nature phytoplankton have unique microbiomes that support their growth and ongoing ocean primary production. This project aims to establish the structure and function of these natural microbiomes, and how they contribute to seafood poisoning caused by bacteria and algal biotoxins. Using advanced flow cytometry with single-cell microbial ....Understanding algal bloom microbiome function to improve seafood safety. Current phytoplankton ecological theory is derived primarily from lab cultures, but in nature phytoplankton have unique microbiomes that support their growth and ongoing ocean primary production. This project aims to establish the structure and function of these natural microbiomes, and how they contribute to seafood poisoning caused by bacteria and algal biotoxins. Using advanced flow cytometry with single-cell microbial profiling, we will sample nano-scale plankton microbiomes and synthetic microbiome phylogenomics to the link between microbiomes and seafood poisoning outbreaks. The outcomes will underpin enhanced predictive modelling of seafood risk to ensure the safety and export security of Australia's $2 billion seafood industry.Read moreRead less
Genome dynamics following plastid endosymbiosis. Plastid endosymbiosis events (enslavement of an algal cell inside of a host cell to form a plastid) are difficult to pinpoint because the genomic data required for a broad array of species are rarely available. Furthermore, the classical method used to infer endosymbiotic gene transfers is being criticised. This project will elucidate the origin of chlorarachniophyte and dinoflagellate plastids and characterise the genome dynamics following endosy ....Genome dynamics following plastid endosymbiosis. Plastid endosymbiosis events (enslavement of an algal cell inside of a host cell to form a plastid) are difficult to pinpoint because the genomic data required for a broad array of species are rarely available. Furthermore, the classical method used to infer endosymbiotic gene transfers is being criticised. This project will elucidate the origin of chlorarachniophyte and dinoflagellate plastids and characterise the genome dynamics following endosymbiosis. It uses densely sampled genome data obtained with high-throughput sequencing technologies. Simulation studies will be used to evaluate methods for inferring endosymbiotic gene transfer and alignment-free methods will be used to improve phylogenomic pipelines.Read moreRead less
Photosynthetic traits as “key performance indicators” of coral health. The objective of this project is to advance knowledge on the healthy functioning of the coral–algal symbiosis, which defines the response of coral reef ecosystems to worldwide environmental change. Current approaches to address this problem have linked coral health to algal symbiont diversity but have been unable to resolve the fundamental symbiont functional traits that govern this link – the “key performance indicators (KPI ....Photosynthetic traits as “key performance indicators” of coral health. The objective of this project is to advance knowledge on the healthy functioning of the coral–algal symbiosis, which defines the response of coral reef ecosystems to worldwide environmental change. Current approaches to address this problem have linked coral health to algal symbiont diversity but have been unable to resolve the fundamental symbiont functional traits that govern this link – the “key performance indicators (KPIs)”. This project plans to couple advanced physiological and functional genomics techniques to transform our understanding of how algal symbiont metabolic KPIs regulate coral growth and stress susceptibility. This may provide new diagnostic capability for the assessment of coral health and may enable us to improve coral reef ecosystem management.Read moreRead less
Freshwater biofouling of hydraulic conduits: impact, mitigation, and control, and the consequences of Climate Change. National economic and environmental benefits will flow from increased outputs of renewable energy from hydroelectric power systems. Improved performance of canals and pipelines will enable energy and water losses to be reduced and will provide the National Electricity Market with additional renewable energy, lowering the requirement for fossil fuels. Knowledge of the impacts of ....Freshwater biofouling of hydraulic conduits: impact, mitigation, and control, and the consequences of Climate Change. National economic and environmental benefits will flow from increased outputs of renewable energy from hydroelectric power systems. Improved performance of canals and pipelines will enable energy and water losses to be reduced and will provide the National Electricity Market with additional renewable energy, lowering the requirement for fossil fuels. Knowledge of the impacts of Climate Change will enable industry to manage changes in rainfall pattern and conduit biofouling. An improved understanding of biofilms can be applied to achieve wider national benefit in water reticulation, irrigation systems and maritime applications. The team will develop research skills and technical expertise and train PhD students and industry counterparts.Read moreRead less
Blue carbon potential of the Great Southern Reef. As one of Australia’s largest vegetated coastal ecosystems, kelp forests provide substantial climate mitigation opportunities. Although kelp carbon is ubiquitous in the deep ocean, the mechanism of transport and amount of kelp carbon reaching deep sinks remains largely unknown, significantly hampering their inclusion in ocean carbon budgets and mitigation action. We will use Australia-wide field data on kelp export, cross-shelf measurements of tr ....Blue carbon potential of the Great Southern Reef. As one of Australia’s largest vegetated coastal ecosystems, kelp forests provide substantial climate mitigation opportunities. Although kelp carbon is ubiquitous in the deep ocean, the mechanism of transport and amount of kelp carbon reaching deep sinks remains largely unknown, significantly hampering their inclusion in ocean carbon budgets and mitigation action. We will use Australia-wide field data on kelp export, cross-shelf measurements of transport and decay, coastal ocean circulation and future distribution models to vastly improve estimates of kelp carbon transfer to deep ocean sinks. Our comprehensive data-driven assessment of kelp carbon sequestration aims to uncover the carbon sink capacity of seaweed forests now and in the futureRead moreRead less
Discovery Early Career Researcher Award - Grant ID: DE160100615
Funder
Australian Research Council
Funding Amount
$348,200.00
Summary
Harnessing chain-forming diatoms for improved lipid biofuel production. The aim of this project is to unlock the molecular secrets of highly productive chain-forming diatom microalgae that allow them to produce high levels of biofuel lipids. The formation of multicellular chains appears key to the success of some of the most widespread and productive diatom species. Through a combination of systems biology, bioinformatics, and genetics experiments, this project aims to investigate the relationsh ....Harnessing chain-forming diatoms for improved lipid biofuel production. The aim of this project is to unlock the molecular secrets of highly productive chain-forming diatom microalgae that allow them to produce high levels of biofuel lipids. The formation of multicellular chains appears key to the success of some of the most widespread and productive diatom species. Through a combination of systems biology, bioinformatics, and genetics experiments, this project aims to investigate the relationship between chain formation and biofuel lipid productivity in Chaetoceros diatoms, and to discover genes and molecules that encode and influence these traits. The knowledge and technology generated as a result may improve biofuel yields, increase the robustness of species growing in open pond systems, and reduce processing costs such as de-watering.Read moreRead less
Evolutionary dynamics of the algae: understanding adaptive potential under environmental change. Ecological niches and trace metal availability have large influences on the role of marine algae as a sink for anthropogenic carbon dioxide. This interdisciplinary project will characterise the evolution of ecological niches and trace metal utilisation in marine algae to better predict the fate of anthropogenic carbon dioxide and coastal ecosystems.
Identifying potential trade-offs of adapting to climate change. Climate change and marine heatwaves introduce strong, directional selection for heat tolerance which, in turn, alters the genetic composition and diversity of marine species. While this may facilitate adaptation to warmer conditions, reduced genetic diversity may limit resilience or cause maladaptation to additional stressors. This project will focus on habitat-forming kelps and will aim to both assess the negative consequences of r ....Identifying potential trade-offs of adapting to climate change. Climate change and marine heatwaves introduce strong, directional selection for heat tolerance which, in turn, alters the genetic composition and diversity of marine species. While this may facilitate adaptation to warmer conditions, reduced genetic diversity may limit resilience or cause maladaptation to additional stressors. This project will focus on habitat-forming kelps and will aim to both assess the negative consequences of rapid selection and to disentangle the mechanisms of climate adaptation. Through a powerful combination of controlled experiments on known genotypes and cutting-edge transcriptomic approaches, this project will transform our understanding of the adaptability of foundation species in a rapidly changing ocean.
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Early Career Industry Fellowships - Grant ID: IE230100464
Funder
Australian Research Council
Funding Amount
$467,577.00
Summary
A genomic toolkit to future-proof the seaweed industry. This project will combine genomics, artificial intelligence and experimental ecology to develop guidelines and technologies that maximise the growth and resilience of key seaweed species for aquaculture. Industrial seaweed production is growing rapidly and is expected to supply 1000s of jobs to regional Australia and 10% to the nation’s emissions reduction target by 2040. Expected outcomes of this project include a genomics-based regulatory ....A genomic toolkit to future-proof the seaweed industry. This project will combine genomics, artificial intelligence and experimental ecology to develop guidelines and technologies that maximise the growth and resilience of key seaweed species for aquaculture. Industrial seaweed production is growing rapidly and is expected to supply 1000s of jobs to regional Australia and 10% to the nation’s emissions reduction target by 2040. Expected outcomes of this project include a genomics-based regulatory framework and hatchery tools that support rapid industry growth and minimise biosecurity and climate change risks. This will benefit government, aquaculture, and ecosystem management by improving design, assessment and implementation options for sustainable and productive use of Australian seaweeds.Read moreRead less