Methods to infer dense genomic information from sparsely genotyped populations. Prediction of phenotype based on DNA polymorphisms or sequence has important applications such as prediction of disease risk in human medicine and prediction of genetic value in plant or animal breeding. This project will enhance precision and lower the cost of association studies leading to substantial increase in accuracy of such predictions. This will allow more effective genetic improvement, particularly of diff ....Methods to infer dense genomic information from sparsely genotyped populations. Prediction of phenotype based on DNA polymorphisms or sequence has important applications such as prediction of disease risk in human medicine and prediction of genetic value in plant or animal breeding. This project will enhance precision and lower the cost of association studies leading to substantial increase in accuracy of such predictions. This will allow more effective genetic improvement, particularly of difficult but important traits such as disease resistance, reduced green-house gas emissions and product quality. The same methods can be extended to improve genetic improvement in plants and better prediction of human disease risk. Read moreRead less
Resolving the Genetics of Grain Pigmentation Traits in Rice . New critical knowledge will enable future breeding of quality black rice cultivars that can exploit the high UV Australian growing environment to enable domestic production of high-value, healthy black rice. The demand for functional foods with health benefits, including black rice, is increasing both domestically and internationally. The concentration of key functional compounds in black rice may be increased by growing optimised cul ....Resolving the Genetics of Grain Pigmentation Traits in Rice . New critical knowledge will enable future breeding of quality black rice cultivars that can exploit the high UV Australian growing environment to enable domestic production of high-value, healthy black rice. The demand for functional foods with health benefits, including black rice, is increasing both domestically and internationally. The concentration of key functional compounds in black rice may be increased by growing optimised cultivars under high-UV radiation, making Australia well placed to produce the highest quality black rice. Utilising a unique genetic resource this project will resolve how the interaction between crop genetics and the growing environment drives the concentration of functional compounds in black rice. Read moreRead less
Genomic selection: a new frontier for higher rates of genetic gain in wheat. The historical rates of genetic gain in wheat production are insufficient to meet the world's future needs for wheat-based food. Genomic selection (GS) is the most likely candidate tool that is capable of delivering the required level of genetic gain. This project will develop data-sets and statistical methods to implement GS in wheat.
Developing Zn-dense, high-yielding wheat by molecular marker technology. The objective of this project is to identify pathways leading to the accumulation of zinc — an important element for human nutrition — in wheat. The project aims to provide biochemical and molecular markers for breeding programs that will facilitate the selection of superior breeding lines for improved human nutrition and seed health. This project builds on studies using a wheat diversity panel with 90 000 gene-based single ....Developing Zn-dense, high-yielding wheat by molecular marker technology. The objective of this project is to identify pathways leading to the accumulation of zinc — an important element for human nutrition — in wheat. The project aims to provide biochemical and molecular markers for breeding programs that will facilitate the selection of superior breeding lines for improved human nutrition and seed health. This project builds on studies using a wheat diversity panel with 90 000 gene-based single nucleotide polymorphism (SNP) markers, where zinc–SNP associations were identified. The project also builds on recent studies that show particular metabolites and macronutrients around anthesis are linked to improved grain zinc concentration at maturity.Read moreRead less
Pulsed oscillating mass analyser. Mass spectrometers are ubiquitous components in chemical analysis, but are often large and expensive. We have developed a new method for mass analysis, which is smaller and cheaper than existing technology. However, the analyser needs further research to determine whether it has the performance specifications to match the other technologies. The objective of this research is to characterise, explore and extend the prototype and to develop the appropriate math ....Pulsed oscillating mass analyser. Mass spectrometers are ubiquitous components in chemical analysis, but are often large and expensive. We have developed a new method for mass analysis, which is smaller and cheaper than existing technology. However, the analyser needs further research to determine whether it has the performance specifications to match the other technologies. The objective of this research is to characterise, explore and extend the prototype and to develop the appropriate mathematical algorithm for mass analysis. Success in this project may lead to a new mass analyser that can be incorporated into analytical instruments, many of which are manufactured in Australia.Read moreRead less
Nanostructured films for optical document security. This project aims to develop a new class of synthetic thin films, with unique optical signatures as strong anti-counterfeiting features for future generations of Australian banknotes. The project expects to produce novel, ultra-thin films patterned on the nanoscale that produce vivid, easily recognisable optical effects building on recent advances in nanophotonic optical design and scalable nanofabrication strategies. The development of a range ....Nanostructured films for optical document security. This project aims to develop a new class of synthetic thin films, with unique optical signatures as strong anti-counterfeiting features for future generations of Australian banknotes. The project expects to produce novel, ultra-thin films patterned on the nanoscale that produce vivid, easily recognisable optical effects building on recent advances in nanophotonic optical design and scalable nanofabrication strategies. The development of a range of optical security features in Australia will ensure long-term confidence in our currency. An outcome of the project could be the commercialisation of new types of anti-counterfeiting features for use in Australia and overseas.Read moreRead less
Nanostructured Carbon Electrodes. The development of higher capacity energy storage devices is critical to the efficient use of energy. The fundamental knowledge gained in this project will enable the production of the next generation advanced electrode materials for this purpose and hence provide many new commercial opportunities for Australian industry. The project brings together world leaders in their own fields to address a highly multidisciplinary area of research and will provide an excel ....Nanostructured Carbon Electrodes. The development of higher capacity energy storage devices is critical to the efficient use of energy. The fundamental knowledge gained in this project will enable the production of the next generation advanced electrode materials for this purpose and hence provide many new commercial opportunities for Australian industry. The project brings together world leaders in their own fields to address a highly multidisciplinary area of research and will provide an excellent training for PhD students and post doctoral Research Fellows, enabling them to work in and contribute to the development of new nanotechnology industries in Australia.Read moreRead less
Parametric Brain Imaging via Modeling and Analysis of Electroencephalographic Signals. Parameters of brain function and physiology will be spatially imaged with high time resolution via their effects on electroencephalographic (EEG) signals, a form of imaging that is impossible with existing methods. This will be achieved by improving existing physiologically-based models of the generation of EEGs and developing analysis tools based on fitting of model predictions to multielectrode EEG data. T ....Parametric Brain Imaging via Modeling and Analysis of Electroencephalographic Signals. Parameters of brain function and physiology will be spatially imaged with high time resolution via their effects on electroencephalographic (EEG) signals, a form of imaging that is impossible with existing methods. This will be achieved by improving existing physiologically-based models of the generation of EEGs and developing analysis tools based on fitting of model predictions to multielectrode EEG data. The results will be used to probe spatiotemporal features of EEGs in normal subjects to explore the underlying fundamental mechanisms and to infer novel parameter variations of practical relevance.Read moreRead less
Advanced animal breeding in aquaculture: using genome-wide molecular breeding values for rapid animal improvement in the silver-lipped pearl oyster. The primary impediment to achieving rapid genetic progress in aquaculture is an inability to accurately and rapidly identify high-performance animals for selection as parents in animal breeding programs. This project aims to develop an innovative genomic selection breeding system for the silver-lipped pearl oyster to overcome current limitations ass ....Advanced animal breeding in aquaculture: using genome-wide molecular breeding values for rapid animal improvement in the silver-lipped pearl oyster. The primary impediment to achieving rapid genetic progress in aquaculture is an inability to accurately and rapidly identify high-performance animals for selection as parents in animal breeding programs. This project aims to develop an innovative genomic selection breeding system for the silver-lipped pearl oyster to overcome current limitations associated with traditional animal improvement methods. The use of genomic selection will not only transform the Australian pearl oyster industry, but it will also showcase the potential of genomic selection in aquaculture globally. Furthermore, knowledge gained from this project can also be applied to a variety of other Australian aquaculture species to accelerate the uptake of this technology.Read moreRead less
An Australian storm wave damage and beach erosion early warning system. This project aims to develop a new coastal hazard early-warning system capability for Australia, to alert coastal communities, emergency managers and coastal engineers to impending storm wave damage and coastal erosion. Emergency preparedness informed by early warning is expected to significantly benefit vulnerable communities and infrastructure along Australia’s coasts.