Understanding disease resistance gene evolution across the Brassicaceae. Pan genomes represent the diversity of a species, including structural and sequence variation, which cannot be provided by a reference genome alone. In this project we will characterise resistance gene diversity across the Brassicaceae pan genomes. Through comparison with resistance gene diversity in cultivated Brassica species we will understand selection underlying resistance gene evolution in wild species and subsequent ....Understanding disease resistance gene evolution across the Brassicaceae. Pan genomes represent the diversity of a species, including structural and sequence variation, which cannot be provided by a reference genome alone. In this project we will characterise resistance gene diversity across the Brassicaceae pan genomes. Through comparison with resistance gene diversity in cultivated Brassica species we will understand selection underlying resistance gene evolution in wild species and subsequent domestication and breeding. Knowledge on how variation affects disease susceptibility, especially to the devastating fungal pathogen blackleg, and contributes to phenotypic variation, will lead to improved plant protection strategies and increased crop resilience.Read moreRead less
The More the Merrier? Investigating copy number variation in Brassicas. This project intends to develop an understanding of how gene copy number variation affects disease susceptibility to help in the design of novel plant protection strategies. Gene copy number variants (CNVs) are segments of DNA that have been duplicated or lost in the genome of one individual or line with respect to another. CNVs have been shown to contribute significantly to phenotypic differences in humans, including diseas ....The More the Merrier? Investigating copy number variation in Brassicas. This project intends to develop an understanding of how gene copy number variation affects disease susceptibility to help in the design of novel plant protection strategies. Gene copy number variants (CNVs) are segments of DNA that have been duplicated or lost in the genome of one individual or line with respect to another. CNVs have been shown to contribute significantly to phenotypic differences in humans, including disease susceptibility, and the same seems to apply in plants. This project aims to apply the genome sequences for Brassica species to detect CNVs from re-sequencing data. Knowing how this variation affects an individual or line’s disease susceptibility, especially to the devastating fungal pathogen blackleg, could improve plant protection strategies and crop production.Read moreRead less
Mid-Career Industry Fellowships - Grant ID: IM230100025
Funder
Australian Research Council
Funding Amount
$747,126.00
Summary
Using the blackleg fungus as a model for maximising fungicide efficacy. Resistance to chemicals impacts the ability to control many diseases across many crops. This project aims to identify key epidemiological factors contributing to fungicide resistance in an emerging model system, blackleg disease of canola, using innovative approaches. The outcomes of this research will be management strategies for minimising the risk of evolution of fungicide resistance, a key industry need. This will also e ....Using the blackleg fungus as a model for maximising fungicide efficacy. Resistance to chemicals impacts the ability to control many diseases across many crops. This project aims to identify key epidemiological factors contributing to fungicide resistance in an emerging model system, blackleg disease of canola, using innovative approaches. The outcomes of this research will be management strategies for minimising the risk of evolution of fungicide resistance, a key industry need. This will also enhance interdisciplinary collaborations through combining field and molecular research. These management strategies will provide significant economic benefits by ensuring increased canola yields, whilst providing health and environmental benefits through minimisation of unnecessary use of fungicides.Read moreRead less
Building better Brassicas: Understanding disease resistance mechanisms across the Brassicaceae. Brassica species are important crops producing cooking oil, vegetables and biofuel, grown in diverse environments with a high economic and export value. Blackleg disease, caused by the fungus Leptospheria maculans, is the most important disease of brassica crops world-wide. The newly available brassica genome sequence provides the resources to study the co-evolution of this plant and pathogen. This pr ....Building better Brassicas: Understanding disease resistance mechanisms across the Brassicaceae. Brassica species are important crops producing cooking oil, vegetables and biofuel, grown in diverse environments with a high economic and export value. Blackleg disease, caused by the fungus Leptospheria maculans, is the most important disease of brassica crops world-wide. The newly available brassica genome sequence provides the resources to study the co-evolution of this plant and pathogen. This project will characterise the evolution and conservation of resistance genes in wild and cultivated brassicas, using next-generation sequencing technology, to assess their potential for crop improvement. An understanding of the evolution of genes responsible for resistance will lead to improved plant protection strategies for brassica crops.Read moreRead less
Mechanisms of antifungal resistance in blackleg disease of canola. This project aims to determine how fungicide resistance evolves in the fungus Leptosphaeria maculans, the major pathogen of the oilseed crop canola. Global food production has become more reliant on the use of antifungal agents to protect crops, however these advances are now threatened by the emergence of drug-resistant microbes. The knowledge generated by this project will be used to reduce the risk of resistance evolving in po ....Mechanisms of antifungal resistance in blackleg disease of canola. This project aims to determine how fungicide resistance evolves in the fungus Leptosphaeria maculans, the major pathogen of the oilseed crop canola. Global food production has become more reliant on the use of antifungal agents to protect crops, however these advances are now threatened by the emergence of drug-resistant microbes. The knowledge generated by this project will be used to reduce the risk of resistance evolving in populations of the blackleg fungus. This will have economic benefits through ensuring increased canola yields, while providing health and environmental benefits through minimisation of use of fungicides.Read moreRead less