Deciphering the regulatory principles of metazoan development. This proposal aims to elucidate how regulatory elements in the genome, known as enhancers, determine the identity and function of animal tissues. Currently, it is believed that enhancers cannot be traced across evolutionarily distant animals. The project uses novel concepts, computational and molecular approaches to identify deeply conserved enhancers. It further dissects the mechanism of function by proteomics and high-throughput ge ....Deciphering the regulatory principles of metazoan development. This proposal aims to elucidate how regulatory elements in the genome, known as enhancers, determine the identity and function of animal tissues. Currently, it is believed that enhancers cannot be traced across evolutionarily distant animals. The project uses novel concepts, computational and molecular approaches to identify deeply conserved enhancers. It further dissects the mechanism of function by proteomics and high-throughput genomics. The expected outcomes will overturn our current view on enhancer evolution and reposition our understanding of how enhancers are functionally encoded in the genome. The work is an important contribution to understanding cellular complexity and species evolution with wide-ranging impact in genetics.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE200100620
Funder
Australian Research Council
Funding Amount
$424,856.00
Summary
Phenotypic plasticity of reef fish vision in a changing world. This project aims to investigate why fishes have more colour vision channels than any other vertebrate on the planet by studying representatives from the most vibrant ecosystem on earth, the Great Barrier Reef. It is currently not clear how vision is controlled on the molecular level and how this translates to the performance and survival of an animal. Through an innovative approach to understanding colour vision and animal behaviour ....Phenotypic plasticity of reef fish vision in a changing world. This project aims to investigate why fishes have more colour vision channels than any other vertebrate on the planet by studying representatives from the most vibrant ecosystem on earth, the Great Barrier Reef. It is currently not clear how vision is controlled on the molecular level and how this translates to the performance and survival of an animal. Through an innovative approach to understanding colour vision and animal behaviour, this project expects to advance Australia’s leadership in neuroscience and ecology, while also increasing the capacity for international collaborations. Beyond the scientific benefit, it will create public awareness about an endangered ecosystem, inform reef guardianship and may inspire new sensory technology.Read moreRead less
Evolution of environmental regulation of cell states in animal life cycles. This project seeks to understand how the environment influences the fate of cells over an animal's life, and how this influence originated in animal evolution. Using a homegrown Australian model, a sea sponge from the Great Barrier Reef, and advanced multi-omic approaches (genomics plus cell biology), this project aims to uncover the mechanisms underlying global cell state changes that are induced through the interplay o ....Evolution of environmental regulation of cell states in animal life cycles. This project seeks to understand how the environment influences the fate of cells over an animal's life, and how this influence originated in animal evolution. Using a homegrown Australian model, a sea sponge from the Great Barrier Reef, and advanced multi-omic approaches (genomics plus cell biology), this project aims to uncover the mechanisms underlying global cell state changes that are induced through the interplay of environmental and endogenous signals at metamorphosis. Because of the evolutionary position of sponges, outcomes of this project expect to reveal the cardinal rules governing environmentally-induced cell state changes that are obligatory for most animals to complete their complex life cycles.Read moreRead less
Mitochondria as sensors of environmental threats. This project aims to understand how energy-generating mitochondria control immune responses, both in immune cells called macrophages and in the nematode Caenorhabditis elegans (a free-living roundworm used as a model organism to study gene function and evolutionary biology). The project expects to advance knowledge of how a process called mitochondrial fission enables cells to respond to environmental threats. Expected outcomes include important ....Mitochondria as sensors of environmental threats. This project aims to understand how energy-generating mitochondria control immune responses, both in immune cells called macrophages and in the nematode Caenorhabditis elegans (a free-living roundworm used as a model organism to study gene function and evolutionary biology). The project expects to advance knowledge of how a process called mitochondrial fission enables cells to respond to environmental threats. Expected outcomes include important conceptual advances in cell biology and genetics, new international and national collaborations, and improved methods for cell biology research. Anticipated benefits include a knowledge base that can be indirectly applied in the long term in the development of new strategies to combat infections.Read moreRead less
Origin and evolution of animal-bacterial symbiosis. This project seeks to understand how interactions between animals and their microbial symbionts – the holobiont – evolved, and how they are influenced by the environment over an animal's life. Using a homegrown Australian model, a sea sponge from the Great Barrier Reef, and advanced multi-omic approaches (genomics plus cell biology), this project aims to uncover the mechanisms underlying the establishment and maintenance of the holobiont throug ....Origin and evolution of animal-bacterial symbiosis. This project seeks to understand how interactions between animals and their microbial symbionts – the holobiont – evolved, and how they are influenced by the environment over an animal's life. Using a homegrown Australian model, a sea sponge from the Great Barrier Reef, and advanced multi-omic approaches (genomics plus cell biology), this project aims to uncover the mechanisms underlying the establishment and maintenance of the holobiont through development, and under changing ecological and environmental conditions. Because of the evolutionary position of sponges, outcomes of this project expect to reveal cardinal rules governing animal-microbe interactions that are fundamental to the health and conservation of most animals and ecosystems.Read moreRead less
Marine sponge–microbe interactions and the origin of animal innate immunity. This project aims to address how the animal innate immune system evolved to discriminate between potential pathogens versus beneficial symbionts by studying a marine sponge holobiont. Using advanced genomic and cellular approaches, the project will uncover deeply conserved regulatory pathways used by the cells of sponges, humans and other animals, and thereby identify cardinal rules governing animal innate immunity and ....Marine sponge–microbe interactions and the origin of animal innate immunity. This project aims to address how the animal innate immune system evolved to discriminate between potential pathogens versus beneficial symbionts by studying a marine sponge holobiont. Using advanced genomic and cellular approaches, the project will uncover deeply conserved regulatory pathways used by the cells of sponges, humans and other animals, and thereby identify cardinal rules governing animal innate immunity and its evolutionary origin. The project will provide an understanding of how beneficial microbial symbionts are recruited and maintained by animals, and are instrumental to the health of our environment and all its inhabitants.Read moreRead less
Recombination and the genomic landscape of speciation. This project aims to evaluate how genomes become different during the origin of species by utilising an innovative system where multiple replicates of the speciation process exist. This project expects to generate knowledge in the area of speciation genetics by exploring the effects of sex, migration and selection on the diversity of hundreds of genomes from an Australian wildflower. Expected outcomes of this project include a deeper underst ....Recombination and the genomic landscape of speciation. This project aims to evaluate how genomes become different during the origin of species by utilising an innovative system where multiple replicates of the speciation process exist. This project expects to generate knowledge in the area of speciation genetics by exploring the effects of sex, migration and selection on the diversity of hundreds of genomes from an Australian wildflower. Expected outcomes of this project include a deeper understanding of the maintenance of genetic diversity in natural populations, and development of a model organism for studying the genetics and ecology of speciation. This project should provide significant benefits including enhanced capacity in evolutionary genetics in Australia.Read moreRead less
How does timing affect mammalian brain development and evolution? This project aims to generate fundamental knowledge on the origin of diversity in mammalian brain circuits by studying development of marsupials and rodents. The expected outcome is to elucidate how differences in the timing, rate and sequence of development of gene expression, cell differentiation and circuit formation can relate to the origin of key evolutionary innovations in the mammalian brain. The significance of understandi ....How does timing affect mammalian brain development and evolution? This project aims to generate fundamental knowledge on the origin of diversity in mammalian brain circuits by studying development of marsupials and rodents. The expected outcome is to elucidate how differences in the timing, rate and sequence of development of gene expression, cell differentiation and circuit formation can relate to the origin of key evolutionary innovations in the mammalian brain. The significance of understanding the dynamics of developmental systems that shape complex brain traits includes establishing new developmental paradigms in evolutionary theory, generating new tools to investigate and manipulate brain gene expression in vivo, and the potential discovery of the causes of neurodevelopmental dysfunction.Read moreRead less
Conotoxin diversification and evolution of venom peptides in cone snails. The marine snails of the genus Conus have evolved one of the most complex venoms that has emerged as a rich source of novel bioactive peptides. However, < 0.1% of their true potential has been characterised to-date. Using advanced genomic, proteomic, structural and pharmacological approaches pioneered in our laboratory, this study will decipher how conotoxin diversification from ancestral worm hunters facilitated the shift ....Conotoxin diversification and evolution of venom peptides in cone snails. The marine snails of the genus Conus have evolved one of the most complex venoms that has emerged as a rich source of novel bioactive peptides. However, < 0.1% of their true potential has been characterised to-date. Using advanced genomic, proteomic, structural and pharmacological approaches pioneered in our laboratory, this study will decipher how conotoxin diversification from ancestral worm hunters facilitated the shift in diet to modern fish and mollusc hunting species by determining the evolutionary trajectories of positively selected conotoxins. Investigation of the structure and function of these highly optimised venom peptides will provide new research tools and potential leads to new pharmaceuticals and agrochemicals.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE230100284
Funder
Australian Research Council
Funding Amount
$438,547.00
Summary
Adaptation potential of Australia’s coral reefs to a changing climate. Oceans are changing. Coral reefs are wonders of high socio-economic value threatened by climate extremes. This project aims to identify reefs that support the most fundamental biological processes for ecosystem-scale resilience: dispersal, symbioses, and adaptation. To urgently prepare against extinction, this project expects to deliver ground-breaking estimates of coral evolution by integrating genomics and innovative diseas ....Adaptation potential of Australia’s coral reefs to a changing climate. Oceans are changing. Coral reefs are wonders of high socio-economic value threatened by climate extremes. This project aims to identify reefs that support the most fundamental biological processes for ecosystem-scale resilience: dispersal, symbioses, and adaptation. To urgently prepare against extinction, this project expects to deliver ground-breaking estimates of coral evolution by integrating genomics and innovative disease models. Expected outcomes include the discovery of reefs that can survive extremes and repopulate other reefs, providing benefits in optimized capabilities to protect resilient and vulnerable reefs to sustain future ecosystem services and boosting Australia as a global leader in the conservation genomics revolution.Read moreRead less