New Molecular Approaches to Comparative Phylogeography. Funds are requested to gather data to test new molecular and analytical approaches in the field of molecular phylogeography. We will generate phylogeographic hypotheses from mitochondrial and microsatellite DNA for six species and evaluate the utility of microsatellite data for the reconstruction of phylogeographic history. We will borrow powerful analytical techniques from the field of evolutionary ecology and use them in a completely nove ....New Molecular Approaches to Comparative Phylogeography. Funds are requested to gather data to test new molecular and analytical approaches in the field of molecular phylogeography. We will generate phylogeographic hypotheses from mitochondrial and microsatellite DNA for six species and evaluate the utility of microsatellite data for the reconstruction of phylogeographic history. We will borrow powerful analytical techniques from the field of evolutionary ecology and use them in a completely novel way to test hypotheses of microsatellite diversity. Our research is inter-disciplinary in that we will bridge the gap between molecular phylogenetics and molecular evolution and in so doing make a major advancement in this emerging field.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE190100544
Funder
Australian Research Council
Funding Amount
$344,682.00
Summary
The drivers of genome evolution and diversification in marsupials. This project aims to investigate the impact of the four basic forces of evolution, mutation, selection, neutral drift, and gene flow, on the genome. Genome-scale data have a signature of these forces and extracting it would greatly improve the quality of evolutionary models fit to the data, but the framework to identify the evolutionary forces has not been developed. This project will develop tests for assessing the impact of the ....The drivers of genome evolution and diversification in marsupials. This project aims to investigate the impact of the four basic forces of evolution, mutation, selection, neutral drift, and gene flow, on the genome. Genome-scale data have a signature of these forces and extracting it would greatly improve the quality of evolutionary models fit to the data, but the framework to identify the evolutionary forces has not been developed. This project will develop tests for assessing the impact of the primary evolutionary forces on the genome, and test these methods using simulations. The new framework of genomic analysis will be disseminated through an intuitive software package, and will be used to estimate with unprecedented confidence the history of diversification and genome evolution of marsupials.Read moreRead less
How are visual gene pathways lost and restored during reptile evolution? This project aims to investigate how complex traits are lost during evolution, and once lost if they can be regained. The project will use the diverse visual systems of snakes and lizards to shed light on the process of gene loss in degenerative lineages, and discover the mechanisms that compensate for gene losses in taxa with secondarily evolved visual capabilities- providing a case of evolutionary re-innovation in complex ....How are visual gene pathways lost and restored during reptile evolution? This project aims to investigate how complex traits are lost during evolution, and once lost if they can be regained. The project will use the diverse visual systems of snakes and lizards to shed light on the process of gene loss in degenerative lineages, and discover the mechanisms that compensate for gene losses in taxa with secondarily evolved visual capabilities- providing a case of evolutionary re-innovation in complex traits.Read moreRead less
Evolving rates: foundations for the next generation of molecular clocks. This project aims to investigate the causes and consequences of variation in rate of DNA sequence evolution across three kingdoms of life. Dates estimated from DNA sequences have a wide range of applications, including evolutionary biology, conservation prioritisation and epidemiology. These methods rely on accurate rate estimates, but current models lack information about the biological drivers of rates of genomic change. ....Evolving rates: foundations for the next generation of molecular clocks. This project aims to investigate the causes and consequences of variation in rate of DNA sequence evolution across three kingdoms of life. Dates estimated from DNA sequences have a wide range of applications, including evolutionary biology, conservation prioritisation and epidemiology. These methods rely on accurate rate estimates, but current models lack information about the biological drivers of rates of genomic change. This project will test reliability of current methods, identify potentially misleading estimates of disease origin or conservation priorities, and develop new approaches with empirically-informed models of rate change.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE190100491
Funder
Australian Research Council
Funding Amount
$418,386.00
Summary
Linking genomic changes to the generation of biodiversity. This project aims to provide a suite of theories, methods and software to enhance our understanding on how the generation of variation at molecular level is linked to the generation of species richness at lineage level. This new approach tests various ways that molecular changes are manifested as patterns of diversification, as revealed by genomic data analysed at the lineage level in phylogenetic studies. Expected outcomes of this proje ....Linking genomic changes to the generation of biodiversity. This project aims to provide a suite of theories, methods and software to enhance our understanding on how the generation of variation at molecular level is linked to the generation of species richness at lineage level. This new approach tests various ways that molecular changes are manifested as patterns of diversification, as revealed by genomic data analysed at the lineage level in phylogenetic studies. Expected outcomes of this project add to a growing body of evolutionary theory and provide practical phylogenetic tools for future analyses. These should benefit Australia by improving our understanding on the formation of Australia’s biodiversity hotspots.Read moreRead less
The influence of breeding synchrony on avian reproductive strategies. Australia has a strong international reputation for research on avian evolutionary biology, in part, because of our diverse and unique avifauna. This research will resolve one of the more contentious issues in this field concerning the influence of breeding synchrony on a range of reproductive behaviours. Our experimental approach incorporates a series of new and innovative techniques and will help maintain Australia's leading ....The influence of breeding synchrony on avian reproductive strategies. Australia has a strong international reputation for research on avian evolutionary biology, in part, because of our diverse and unique avifauna. This research will resolve one of the more contentious issues in this field concerning the influence of breeding synchrony on a range of reproductive behaviours. Our experimental approach incorporates a series of new and innovative techniques and will help maintain Australia's leading role in this area. The project will provide intensive training for students and also promote awareness about Australia's bird life to a wide audience, including rural communities who have a critical role in the long-term preservation of many species.Read moreRead less
The evolution of sequential polyandry: An experimental approach. The notion that polyandry has evolved as an adaptive female strategy remains highly controversial because empirical work lags far behind theoretical advances. This study will empirically test current hypotheses for the evolution of polyandry using the Australian frog Pseudophryne bibroni as a model species. Aspects of the reproductive biology of this species make it ideal for critically testing diverse hypotheses that can not be ea ....The evolution of sequential polyandry: An experimental approach. The notion that polyandry has evolved as an adaptive female strategy remains highly controversial because empirical work lags far behind theoretical advances. This study will empirically test current hypotheses for the evolution of polyandry using the Australian frog Pseudophryne bibroni as a model species. Aspects of the reproductive biology of this species make it ideal for critically testing diverse hypotheses that can not be easily tested in groups with internal fertilisation or with simultaneous polyandry. Understanding why females mate with multiple males will have extreme implications for sexual selection and mating system theory.Read moreRead less
Origins of a biodiversity hotspot flora: diversification of the Australian Proteaceae. Why does Australia's only biodiversity hotspot, with nearly 3000 endemic plant species, occur in an area with poor soils and low rainfall? This project will analyse DNA sequences from over 1000 plant species of the Australian Proteaceae, many found only in this hotspot, to help us understand the evolutionary and ecological origins of this iconic flora.
Were the Tertiary radiations of the Australian flora synchronous? A molecular phylogenetic approach. The fossil record shows that in a short period from about 20 Mya, the ancestral Gondwanan rainforest gave way to the unique Australian ?sclerophyll? flora dominated by eucalypts, acacias and casuarinas. This coincided with a drying climate and the advent of fire. It is hypothesized that ?explosive? evolutionary radiations rapidly increased the number of sclerophyll species, rather than a mere r ....Were the Tertiary radiations of the Australian flora synchronous? A molecular phylogenetic approach. The fossil record shows that in a short period from about 20 Mya, the ancestral Gondwanan rainforest gave way to the unique Australian ?sclerophyll? flora dominated by eucalypts, acacias and casuarinas. This coincided with a drying climate and the advent of fire. It is hypothesized that ?explosive? evolutionary radiations rapidly increased the number of sclerophyll species, rather than a mere range expansion of pre-existing species. In a novel approach, molecular phylogenies of several distantly related plant groups will be used to test whether explosive evolutionary radiations took place simultaneously and to identify the environmental triggers.Read moreRead less
Escalation of a coevolutionary arms race between cuckoos and their hosts: cognitive causes and evolutionary consequences. Cuckoos lay their eggs in the nests of other species, provoking an evolutionary arms race in which hosts evolve defences against parasitism and cuckoos evolve ever more cunning tricks to gain reproductive success. In principle, the degree of specialization required to defeat host defences could cause cuckoo speciation. Our previous research has revealed that the arms race bet ....Escalation of a coevolutionary arms race between cuckoos and their hosts: cognitive causes and evolutionary consequences. Cuckoos lay their eggs in the nests of other species, provoking an evolutionary arms race in which hosts evolve defences against parasitism and cuckoos evolve ever more cunning tricks to gain reproductive success. In principle, the degree of specialization required to defeat host defences could cause cuckoo speciation. Our previous research has revealed that the arms race between the Horsfield's bronze-cuckoo and its superb fairy-wren host has reached a uniquely advanced stage, hitherto undescribed, and previously thought imposssible to attain. We aim to investigate the mechanisms underlying this specialization and investigate whether it is driving speciation of the Chrysococcyx cuckoos.Read moreRead less