Cellular determinants of retrotransposition. This project aims to understand the processes that control retrotransposition in a genome. Transposable elements make up more than 50% of human genomes. The accumulation of retrotransposons through millions of years of evolution has shaped the genomes of all eukaryotic organisms, including humans. Researchers have elucidated mechanisms the host uses to defend the genome against insertional mutagenesis by retrotransposons, but the cellular machinery an ....Cellular determinants of retrotransposition. This project aims to understand the processes that control retrotransposition in a genome. Transposable elements make up more than 50% of human genomes. The accumulation of retrotransposons through millions of years of evolution has shaped the genomes of all eukaryotic organisms, including humans. Researchers have elucidated mechanisms the host uses to defend the genome against insertional mutagenesis by retrotransposons, but the cellular machinery and genomic environments needed for retrotransposition are undefined. This project aims to use models to uncover the mechanisms that control retrotransposition. This is expected to reveal more about human origins.Read moreRead less
Deciphering the regulatory principles of metazoan development. This proposal aims to elucidate how regulatory elements in the genome, known as enhancers, determine the identity and function of animal tissues. Currently, it is believed that enhancers cannot be traced across evolutionarily distant animals. The project uses novel concepts, computational and molecular approaches to identify deeply conserved enhancers. It further dissects the mechanism of function by proteomics and high-throughput ge ....Deciphering the regulatory principles of metazoan development. This proposal aims to elucidate how regulatory elements in the genome, known as enhancers, determine the identity and function of animal tissues. Currently, it is believed that enhancers cannot be traced across evolutionarily distant animals. The project uses novel concepts, computational and molecular approaches to identify deeply conserved enhancers. It further dissects the mechanism of function by proteomics and high-throughput genomics. The expected outcomes will overturn our current view on enhancer evolution and reposition our understanding of how enhancers are functionally encoded in the genome. The work is an important contribution to understanding cellular complexity and species evolution with wide-ranging impact in genetics.Read moreRead less
Evolution and function of fragmented animal mitochondrial genomes. This project will reveal why animal mitochondrial genomes are in pieces, and how fragmented mitochondrial genomes evolve and function. This project will discover whether or not fragmented mitochondrial genomes have functional advantages. Knowledge generated from this project will lead to new approaches to mitochondrial genetic diseases in humans.
Engineering the defence-vigour balance for increased crop yield. This project aims to investigate a novel hypothesis to increase seed yield and vigour. Translating from a model system it will test whether the deliberate inactivation of a gene in tomato and banana, by RNA interference or genome editing, enhances performance. A dysfunctional gene in the viral defence pathway of the model plant species N. benthamiana boosted its seed yield and vigour. This project will investigate the enhancement, ....Engineering the defence-vigour balance for increased crop yield. This project aims to investigate a novel hypothesis to increase seed yield and vigour. Translating from a model system it will test whether the deliberate inactivation of a gene in tomato and banana, by RNA interference or genome editing, enhances performance. A dysfunctional gene in the viral defence pathway of the model plant species N. benthamiana boosted its seed yield and vigour. This project will investigate the enhancement, determine the consequences to the plant's defences, measure the balance between defence and vigour, and examine the risk of disease to such yield-enhanced crops. This is a radical departure from conventional approaches to crop improvement but if successful would provide an additional solution to the problem of future food security.Read moreRead less
Evolution of defensive and predatory venom in cone snails. This project aims to determine the molecular and cellular origins and mechanisms regulating venom production and release to establish how defensive venoms evolved in cone snails. Cone snails possess a remarkable ability to rapidly and reversibly switch between separate venoms in response to predatory or defensive stimuli, implying that these are separately evolved and regulated mechanisms. The investigators hypothesise that defensive ven ....Evolution of defensive and predatory venom in cone snails. This project aims to determine the molecular and cellular origins and mechanisms regulating venom production and release to establish how defensive venoms evolved in cone snails. Cone snails possess a remarkable ability to rapidly and reversibly switch between separate venoms in response to predatory or defensive stimuli, implying that these are separately evolved and regulated mechanisms. The investigators hypothesise that defensive venoms, originally evolved in the proximal venom duct to protect against threats such as cephalopod and fish predation, have been repurposed in the proximal duct to allow predators to become prey, facilitating the switch from worm to mollusc and fish hunting. The project aims to show the broad implications for the evolution of venoms in animals and discover the regulatory mechanisms driving venom peptide expression.Read moreRead less
CCC method: new applications to electron scattering from atoms and molecules. Achievement of the stated aims will be of enormous benefit to industry
and laboratory research because at the present time no reliably accurate
models exist for the range of the required scattering parameters. The
modelling work will result in development of new software packages for
supercomputers and will provide training for research associates, PhD
and Honours students in an area where Australian theorists are ....CCC method: new applications to electron scattering from atoms and molecules. Achievement of the stated aims will be of enormous benefit to industry
and laboratory research because at the present time no reliably accurate
models exist for the range of the required scattering parameters. The
modelling work will result in development of new software packages for
supercomputers and will provide training for research associates, PhD
and Honours students in an area where Australian theorists are
preeminent.Read moreRead less
A complete computational approach to electron-atom collisions. Our research contributes to multidisciplinary efforts to improve the efficiency and reduce the toxicity of lighting systems, which has far-reaching implications for environmental sustainability. It will also facilitate significant improvements in the accuracy of astrophysical and artificial plasma modelling, as well as providing insight into many processes fundamental to nanotechnology research. The research project will further enha ....A complete computational approach to electron-atom collisions. Our research contributes to multidisciplinary efforts to improve the efficiency and reduce the toxicity of lighting systems, which has far-reaching implications for environmental sustainability. It will also facilitate significant improvements in the accuracy of astrophysical and artificial plasma modelling, as well as providing insight into many processes fundamental to nanotechnology research. The research project will further enhance our reputation in an area where Australian theorists are preeminent, and the research training will produce PhD graduates with a high-level ability in numerical modelling using supercomputers. Such skills are essential in many defense, mining and technological applications of national priority.Read moreRead less
Novel collision experiments with metastable neon atoms in an atom trap. The aim of this project is to investigate collisions involving atoms in long lived excited states (metastable states). The project will utilise a magneto-optical trap to investigate electron-atom collisions as well as interatomic collisions for ultra-cold atoms. The outcomes of such investigations extend scientific knowledge of these important processes as a well as provide data for testing fundamental scattering theories. T ....Novel collision experiments with metastable neon atoms in an atom trap. The aim of this project is to investigate collisions involving atoms in long lived excited states (metastable states). The project will utilise a magneto-optical trap to investigate electron-atom collisions as well as interatomic collisions for ultra-cold atoms. The outcomes of such investigations extend scientific knowledge of these important processes as a well as provide data for testing fundamental scattering theories. This scientific knowledge may lead to further technological advances such as more efficient light sources or a metastable-atom laser that could be used for the production of nano-scale electric circuits.Read moreRead less
Positronic Atoms - A Search for Positron Bound States. An experimental verification of positron bound states will solve a long standing problem in positron physics. A clear understanding of positron binding and the underlying mechanisms will open a new era in low-energy positron-atom/molecular physics, leading the way for breakthrough sciences. For instance, a positron bound state should enhance the annihilation rate between the positron and target valence electron. Positron annihilation, to pro ....Positronic Atoms - A Search for Positron Bound States. An experimental verification of positron bound states will solve a long standing problem in positron physics. A clear understanding of positron binding and the underlying mechanisms will open a new era in low-energy positron-atom/molecular physics, leading the way for breakthrough sciences. For instance, a positron bound state should enhance the annihilation rate between the positron and target valence electron. Positron annihilation, to produce two gamma rays, is a key process in both materials research (e.g. as already heavily employed in defect detection) and bio-medical treatments (e.g. the Positron Emission Tomography, or PET).Read moreRead less
A Microscope for Molecular Reactions. We are proposing to combine new, state-of-the-art detector technology and innovative experimental techniques in the development of A Microscope for Molecular Reactions. This device will enable precise and highly efficient studies on the structure of molecules and their interactions with the physical world. It will be applied to a broad range of problems in contemporary atomic and molecular physics, and will lead to new insights into the dynamics of such re ....A Microscope for Molecular Reactions. We are proposing to combine new, state-of-the-art detector technology and innovative experimental techniques in the development of A Microscope for Molecular Reactions. This device will enable precise and highly efficient studies on the structure of molecules and their interactions with the physical world. It will be applied to a broad range of problems in contemporary atomic and molecular physics, and will lead to new insights into the dynamics of such reactions and their role in our everyday lives.Read moreRead less