Understanding evolution of dominant bacteria inhabiting the rodent gut . The gut microbiome is central to animal health and immune function, however we have an incomplete understanding of how this important symbiotic ecosystem evolved. By approaching this knowledge gap from a historical perspective and using real-time observation, this project will address how the gut community evolved with the rodent host and how members of that community respond to new selective pressures. The significance of ....Understanding evolution of dominant bacteria inhabiting the rodent gut . The gut microbiome is central to animal health and immune function, however we have an incomplete understanding of how this important symbiotic ecosystem evolved. By approaching this knowledge gap from a historical perspective and using real-time observation, this project will address how the gut community evolved with the rodent host and how members of that community respond to new selective pressures. The significance of these findings is in their capacity to inform our understanding of the relationship between host and microbe, not only within a key model system, but by extrapolation to other host-microbe systems. Read moreRead less
Integrating nutritional immunology. What an organism eats affects both its susceptibility to disease and the community of beneficial microorganisms living within its gut. This project will study how nutrition, immunity and the flora of the gut interact, and whether hosts are able to select a diet that optimises their immune response and gut flora in the face of disease challenges.
Tracking the molecular dynamics of adaptation with horizontal gene transfer. This project aims to track the dynamics of adaptation with gene exchange by building the first experimental evolution model that can directly observe this process. The acquisition of genes from other strains and species (horizontal gene transfer) frequently underlies bacterial adaptation, but it is unknown how this occurs. This project aims to shift understanding of how microbial populations respond to environmental cha ....Tracking the molecular dynamics of adaptation with horizontal gene transfer. This project aims to track the dynamics of adaptation with gene exchange by building the first experimental evolution model that can directly observe this process. The acquisition of genes from other strains and species (horizontal gene transfer) frequently underlies bacterial adaptation, but it is unknown how this occurs. This project aims to shift understanding of how microbial populations respond to environmental challenges. There are significant benefits to be gained from understanding how microbes adapt in response to climate change and the widespread application of antibiotics, given that microbial populations form intimate associations with humans and sustain all of the world’s ecosystems.Read moreRead less
Community-level selection: Empirical tests in a microbial system. Given the profile of the question of community-level selection as a long-running controversy, the main benefit of the proposed work, which will critically test the idea in an empirical system, will be to increase recognition of Australia's position as a research nation in evolutionary biology. In exploring mechanisms of floc formation, a key component of wastewater treatment, the work will establish important foundations for impro ....Community-level selection: Empirical tests in a microbial system. Given the profile of the question of community-level selection as a long-running controversy, the main benefit of the proposed work, which will critically test the idea in an empirical system, will be to increase recognition of Australia's position as a research nation in evolutionary biology. In exploring mechanisms of floc formation, a key component of wastewater treatment, the work will establish important foundations for improving the efficiency of wastewater treatment. Improvement in performance of only a few percent will bring important economic savings. This is evidenced by recent commitment of >$US 230 billion to improving the efficiency of wastewater treatment in Germany, Italy and Spain over 5 years.Read moreRead less
Experimental co-evolution of Yeast and E. coli. This project aims to measure the rates and genetic mechanisms of adaptation for individual species within a microbial community. Expected outcomes of this interdisciplinary project include the first genomic and phenotypic dataset of a model microbial community, and novel tools for the analysis of meta-genomic datasets. This project has the potential to transform understanding of microbial adaptation.
Altering host-parasite interactions through wildlife conservation strategies. Disease outbreaks are heightened in endangered animals but strategies used to conserve these species often increase risk of disease; nowhere is this more critical than in species recovery programs. The project will study disease in a recovery program to improve conservation practice and protect Australia's wildlife, ensuring our ecosystems are sustained.
Skin Microbes and Animal Health: Understanding the Ecological Context. This project aims to understand the fundamental ecological relationships between animal hosts (frogs, geckos) and bacteria on their skin by separating host effects from environmental factors that determine skin microbiome composition. The research is significant because it will generate new knowledge needed to understand how skin microbes function in providing protection against disease. Expected outcomes include the provisio ....Skin Microbes and Animal Health: Understanding the Ecological Context. This project aims to understand the fundamental ecological relationships between animal hosts (frogs, geckos) and bacteria on their skin by separating host effects from environmental factors that determine skin microbiome composition. The research is significant because it will generate new knowledge needed to understand how skin microbes function in providing protection against disease. Expected outcomes include the provision of essential information that will guide future research efforts on the factors that determine a healthy skin microbial community (which is needed before skin diseases can be combated). The research will provide significant benefits, including more targeted conservation efforts to combat wildlife skin diseases.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE150101574
Funder
Australian Research Council
Funding Amount
$368,583.00
Summary
Evolution and Adaptation of the Human Microbiome. The bacteria within the human body (microbiome) are vital to human health, and alterations to these intricate microbial communities are now associated with disease. Using ancient DNA, this project aims to examine the evolutionary history of the human microbiome by exploring ancient bacterial communities preserved in calcified dental plaque (calculus) over the past 10 000 years. This will provide valuable information that reveals how these bacteri ....Evolution and Adaptation of the Human Microbiome. The bacteria within the human body (microbiome) are vital to human health, and alterations to these intricate microbial communities are now associated with disease. Using ancient DNA, this project aims to examine the evolutionary history of the human microbiome by exploring ancient bacterial communities preserved in calcified dental plaque (calculus) over the past 10 000 years. This will provide valuable information that reveals how these bacterial communities respond to alterations in human diet, environment, culture, and location. By monitoring changes in a natural modern system, this project aims to determine how these microbial communities established themselves within the human body, elucidating how the microbiome may respond in the future.Read moreRead less
Stories from the past: the impact of industrialisation on the human microbiome. This project aims to explore the history and origin of ‘Industrial’ diseases such as obesity, diabetes, heart disease and autism. Non-communicable, ‘Industrial’ diseases are rising at an alarming rate in Australia, and changes to the beneficial microorganisms within the human body (microbiota) may be to blame. This project will explore how human microbiota have changed over the past 100 years in response to cultural, ....Stories from the past: the impact of industrialisation on the human microbiome. This project aims to explore the history and origin of ‘Industrial’ diseases such as obesity, diabetes, heart disease and autism. Non-communicable, ‘Industrial’ diseases are rising at an alarming rate in Australia, and changes to the beneficial microorganisms within the human body (microbiota) may be to blame. This project will explore how human microbiota have changed over the past 100 years in response to cultural, environmental, and lifestyle factors linked with Industrialisation. This approach will allow stories from the past to inform modern medical treatment strategies and public health decisions in the future. The project will identify changes in environment, diet, hygiene, and medicine that have altered human microbiota in the past and sparked the Industrial disease epidemic in Australia today.Read moreRead less
The evolution of diverse interactions between Wolbachia bacteria and their invertebrate hosts: insights from a novel lineage infecting termite societies. Wolbachia intracellular bacteria are widespread in invertebrates, having evolved a remarkable range of host-interactions, from parasitic to mutualistic. I have discovered phylogenetically novel Wolbachia that infect the structural pests termites, and will investigate their host-effects and transmission dynamics. This will determine the generali ....The evolution of diverse interactions between Wolbachia bacteria and their invertebrate hosts: insights from a novel lineage infecting termite societies. Wolbachia intracellular bacteria are widespread in invertebrates, having evolved a remarkable range of host-interactions, from parasitic to mutualistic. I have discovered phylogenetically novel Wolbachia that infect the structural pests termites, and will investigate their host-effects and transmission dynamics. This will determine the generality of phenomena known from other Wolbachia, such as cytoplasmic incompatibility and horizontal transfer. The complexity of termite societies make them interesting candidates for studying how Wolbachia spread, and the results will be potentially valuable for future termite control strategies. The first comparative phylogenetic examination of diverse Wolbachia will be performed, providing new perspectives on their evolutionary history.Read moreRead less