Evolution of diverse symbiotic phenotypes among native soil bacteria following spread of a genomic island from a rhizobial inoculant. The quality of legume protein depends on symbiotic nitrogen fixation by root nodule bacteria (RNB). Sustainable legume production in Australian agriculture depends on legume inoculation with effective strains of these bacteria. Unfortunately inoculant strains transfer DNA to other soil bacteria resulting in soil populations of RNB that compete for nodulation but a ....Evolution of diverse symbiotic phenotypes among native soil bacteria following spread of a genomic island from a rhizobial inoculant. The quality of legume protein depends on symbiotic nitrogen fixation by root nodule bacteria (RNB). Sustainable legume production in Australian agriculture depends on legume inoculation with effective strains of these bacteria. Unfortunately inoculant strains transfer DNA to other soil bacteria resulting in soil populations of RNB that compete for nodulation but are less effective in nitrogen fixation. This transfer of DNA threatens a $2 billion asset in Australian agriculture. We will use molecular microbial ecology to investigate the mechanisms of genetic transfer of symbiotic DNA in RNB, and use this knowledge to prevent it.Read moreRead less
Harnessing horizontal gene transfer for sustainable nitrogen fixation. This project aims to investigate natural deoxyribonucleic acid (DNA) transfer from nitrogen-fixing bacteria to indigenous bacteria in Australian soils. This project expects to significantly expand our understanding of the molecular and genetic factors contributing to the evolution of ineffective symbiotic bacteria in these soils. An expected outcome of this project is support development of genetically stable bacterial inocul ....Harnessing horizontal gene transfer for sustainable nitrogen fixation. This project aims to investigate natural deoxyribonucleic acid (DNA) transfer from nitrogen-fixing bacteria to indigenous bacteria in Australian soils. This project expects to significantly expand our understanding of the molecular and genetic factors contributing to the evolution of ineffective symbiotic bacteria in these soils. An expected outcome of this project is support development of genetically stable bacterial inoculants for use in agriculture. Inoculation of legumes with nitrogen-fixing symbiotic bacteria is a cheap and environmentally-friendly alternative to chemical fertilisers and contributes $3-4 billion per annum to Australian economy.Read moreRead less
Interaction of Cryptosporidium lifecycle stages with aquatic biofilm communities. Cryptosporidium is the most common non-viral cause of diarrhoeal disease in humans worldwide, and of increasing significance as a cause of disease in livestock and wildlife. It is one of the most significant waterborne pathogens and a major challenge to the provision of safe drinking water by water utilities. Biofilms are a poorly studied component of Cryptosporidium's ecosystem, and can act as an environmental res ....Interaction of Cryptosporidium lifecycle stages with aquatic biofilm communities. Cryptosporidium is the most common non-viral cause of diarrhoeal disease in humans worldwide, and of increasing significance as a cause of disease in livestock and wildlife. It is one of the most significant waterborne pathogens and a major challenge to the provision of safe drinking water by water utilities. Biofilms are a poorly studied component of Cryptosporidium's ecosystem, and can act as an environmental reservoir of the parasite in water storages and pipes and an unpredictable source of water contamination. This project will investigate the nature of this reservoir and factors that support the parasite's survival with a view to providing information of value in limiting the public health significance of the biofilm reservoir.Read moreRead less
Transition from phosphate mining to an economically, environmentally and socially viable agricultural industry on Christmas Island. The main industry on Christmas Island is mining of rock phosphate, but supplies will run out between 2025 and 2030. Consequently, there is an urgent and compelling need to develop other economic industries to support the resident island population by the time mining ceases. This project aims to utilise the project team’s extensive knowledge on legumes, nitrogen fixi ....Transition from phosphate mining to an economically, environmentally and socially viable agricultural industry on Christmas Island. The main industry on Christmas Island is mining of rock phosphate, but supplies will run out between 2025 and 2030. Consequently, there is an urgent and compelling need to develop other economic industries to support the resident island population by the time mining ceases. This project aims to utilise the project team’s extensive knowledge on legumes, nitrogen fixing bacteria and plant growth promoting bacteria to establish the basis for a viable agricultural industry on the Island. The project aims to provide: reliable and sustainable food sources for the local population; potential food export opportunities to southeast Asia; environmental benefits from the improvement of soils; and economic development of allied agricultural industries.Read moreRead less
Australian Laureate Fellowships - Grant ID: FL200100220
Funder
Australian Research Council
Funding Amount
$3,364,492.00
Summary
Understanding host-microbiome signalling axes in ageing. Ageing is an inevitable biological phenomenon and is characterised by alterations in multiple biochemical, immunological and mechanical processes, which are influenced by the gut bacteria. Poor ageing exerts a heavy socioeconomic burden both nationally and globally. The aim of this proposal is to deepen understanding of host-microbiome signalling in ageing by bringing together next generation sequencing technologies to characterise age-ass ....Understanding host-microbiome signalling axes in ageing. Ageing is an inevitable biological phenomenon and is characterised by alterations in multiple biochemical, immunological and mechanical processes, which are influenced by the gut bacteria. Poor ageing exerts a heavy socioeconomic burden both nationally and globally. The aim of this proposal is to deepen understanding of host-microbiome signalling in ageing by bringing together next generation sequencing technologies to characterise age-associated change in gut bacterial composition, metabolic profiling to identify changes in functionality of the ageing microbiome and a combination of in vitro and in vivo screening approaches to establish molecular mechanisms. The new knowledge will facilitate development of improved models of health care.Read moreRead less
Maintenance of Australia's soil resource - water, microbial diversity and function. Water availability is the major limitation to biological activity in semi-arid regions of Australia. We aim to quantify the dynamic relationships between organic matter cycling, microbial diversity and function in relation to seasonality, drought and land management. This will lead to a comprehensive understanding of how water mediates the diversity of soil organisms and their associated functions. This is of sp ....Maintenance of Australia's soil resource - water, microbial diversity and function. Water availability is the major limitation to biological activity in semi-arid regions of Australia. We aim to quantify the dynamic relationships between organic matter cycling, microbial diversity and function in relation to seasonality, drought and land management. This will lead to a comprehensive understanding of how water mediates the diversity of soil organisms and their associated functions. This is of specific relevance to maintaining biodiversity within the unique soil ecosystems that have developed under Australian climatic conditions.Read moreRead less
Quantifying the re-establishment of soil processes and the impact of fire management on rehabilitated bauxite mines in Western Australia. A major objective in the rehabilitation of bauxite mines in the jarrah forest of Western Australia is to return a self-sustaining ecosystem. Nutrient cycling and microbial diversity are key components of the functioning of the rehabilitated system; but little is know about the resilience of these processes in jarrah forests. We aim to quantify the dynamic rela ....Quantifying the re-establishment of soil processes and the impact of fire management on rehabilitated bauxite mines in Western Australia. A major objective in the rehabilitation of bauxite mines in the jarrah forest of Western Australia is to return a self-sustaining ecosystem. Nutrient cycling and microbial diversity are key components of the functioning of the rehabilitated system; but little is know about the resilience of these processes in jarrah forests. We aim to quantify the dynamic relationships between soil organic matter cycling, microbial diversity and function in relation to seasonality, rehabilitation age and fire. This is of specific relevance to restoring biodiversity within rehabilitated Jarrah forests and establishing a time frame for their return to state government management.Read moreRead less
Integrating microbiology and climatic drivers to determine triggers for nitrous oxide emissions from arable soils in semi-arid Western Australia. Increasing nitrous oxide emissions from soil to the atmosphere are a concern as they contribute to global warming and the destruction of the ozone layer. While 70-81% of this increase has been attributed globally to agricultural soils, the factors controlling emissions from arable soils in southern Australia are not well understood. We aim to charact ....Integrating microbiology and climatic drivers to determine triggers for nitrous oxide emissions from arable soils in semi-arid Western Australia. Increasing nitrous oxide emissions from soil to the atmosphere are a concern as they contribute to global warming and the destruction of the ozone layer. While 70-81% of this increase has been attributed globally to agricultural soils, the factors controlling emissions from arable soils in southern Australia are not well understood. We aim to characterise and model the relationship between the soil microbial community responsible for nitrous oxide emissions and soil water availability. Understanding the processes responsible for nitrous oxide emissions will enable us to change the way we manage our semi-arid soils so as to minimise nitrous oxide emissions.Read moreRead less
Novel strategy for optimising fertilizer input coupled with organic residue management for sustainable reconstruction of jarrah forest ecosystem. This project is aimed at judicious management of the rehabilitation process following surface mining by reducing initial fertilizer input along with using organic residue accumulated following pre-mine clearing of vegetation. This approach has the potential for 'speeding-up' the ecosystem development process by initiating early microbial development in ....Novel strategy for optimising fertilizer input coupled with organic residue management for sustainable reconstruction of jarrah forest ecosystem. This project is aimed at judicious management of the rehabilitation process following surface mining by reducing initial fertilizer input along with using organic residue accumulated following pre-mine clearing of vegetation. This approach has the potential for 'speeding-up' the ecosystem development process by initiating early microbial development in rehabilitation practice and reducing the deleterious effect of heavy fertilization. Apart from these ecological advantages, reducing fertilizer application lowers minesite rehabilitation cost incurred by mining companies. This project will be the first attempt to use organic residue and streamlining the use of mineral fertilizers in mine rehabilitation practice.Read moreRead less
Linkage Infrastructure, Equipment And Facilities - Grant ID: LE150100066
Funder
Australian Research Council
Funding Amount
$440,000.00
Summary
Mass Cytometry: A breakthrough in multidimensional systems biology. Mass cytometry - a breakthrough in multidimensional systems biology: Mass Cytometry by Time of Flight marries the resolution, specificity and sensitivity of atomic stable isotope mass spectrometry to the high-throughput, single-cell analytical advantages of flow cytometry. Using molecular probes conjugated with stable isotope tags, a large increase is possible in the number of simultaneous quantitative measurements in complex sa ....Mass Cytometry: A breakthrough in multidimensional systems biology. Mass cytometry - a breakthrough in multidimensional systems biology: Mass Cytometry by Time of Flight marries the resolution, specificity and sensitivity of atomic stable isotope mass spectrometry to the high-throughput, single-cell analytical advantages of flow cytometry. Using molecular probes conjugated with stable isotope tags, a large increase is possible in the number of simultaneous quantitative measurements in complex samples. These parameters, denoting cell type, function and signalling status, will make possible future advances in the understanding of the diversity of cell phenotype and function with a systems biology approach. Read moreRead less