The evolution of bacterial pathogenesis: a genomic approach. The outcome of this research will be a better understanding of the genes involved with adaptation to particular pathogenic lifestyles. Specifically, genes that are rapidly evolving in selected bacterial pathogens of medical and veterinary importance will be identified using a bioinformatics approach that exploits the existence of multiple closely-related genome sequences. Such genes encode potential new targets for therapeutic interv ....The evolution of bacterial pathogenesis: a genomic approach. The outcome of this research will be a better understanding of the genes involved with adaptation to particular pathogenic lifestyles. Specifically, genes that are rapidly evolving in selected bacterial pathogens of medical and veterinary importance will be identified using a bioinformatics approach that exploits the existence of multiple closely-related genome sequences. Such genes encode potential new targets for therapeutic intervention that provide alternatives in the face of emerging antibiotic resistance. Importantly, the methodology developed in this project is broadly applicable to the study of evolution of bacterial pathogenesis in any background: medical, agricultural or horticultural.Read moreRead less
Genome-level insight into the dynamics of a model coral microbiome. The aim of the project is to examine structural and functional microbiome dynamics in an ecologically important coral on the Great Barrier Reef along a natural temperature gradient. Microorganisms form an intimate symbiotic relationship with corals and are critical to their health. However, the microbiome can be disrupted by environmental perturbations, including higher-than-normal ocean temperatures, leaving the coral susceptib ....Genome-level insight into the dynamics of a model coral microbiome. The aim of the project is to examine structural and functional microbiome dynamics in an ecologically important coral on the Great Barrier Reef along a natural temperature gradient. Microorganisms form an intimate symbiotic relationship with corals and are critical to their health. However, the microbiome can be disrupted by environmental perturbations, including higher-than-normal ocean temperatures, leaving the coral susceptible to disease and bleaching. Currently, our understanding of how the microbiome composition and metabolic function change in response to seasonal temperature variation and disease is limited. This project is designed to provide insight into the role the microbiome plays in maintaining coral health and may aid in the long-term preservation of the reefs.Read moreRead less
Safety in numbers: Bacterial aggregation and adaptation to oxidative stress. This project is a new collaboration which links two molecular microbiologists with the complementary skills required to make new insights into the molecular processes that underpin bacterial aggregation and biofilm formation. Biofilms are of immense significance in medical, industrial and environmental settings and so the fundamental information gained from this project will have wider relevance to the field of microbio ....Safety in numbers: Bacterial aggregation and adaptation to oxidative stress. This project is a new collaboration which links two molecular microbiologists with the complementary skills required to make new insights into the molecular processes that underpin bacterial aggregation and biofilm formation. Biofilms are of immense significance in medical, industrial and environmental settings and so the fundamental information gained from this project will have wider relevance to the field of microbiology. An outcome of this proposal will be fundamental knowledge about the production of surface adhesins that will form the basis for rational treatment of disease in the future. Prevention of aggregation and biofilm formation would make bacterial populations more susceptible to conventional antibiotic treatment.Read moreRead less
Microbial Ecology and Control of Foaming in Anaerobic Digesters. One of the world's most common treatments of biosolids (product of wastewater treatment), anaerobic digestion often suffers from accumulation of biological foam. This foam hinders treatment, personnel health and safety, legal requirements for environmental protection are jeopardised and attempts to control digester foaming are costly. There is a clear lack of knowledge about the organisms involved and causes, therefore no informe ....Microbial Ecology and Control of Foaming in Anaerobic Digesters. One of the world's most common treatments of biosolids (product of wastewater treatment), anaerobic digestion often suffers from accumulation of biological foam. This foam hinders treatment, personnel health and safety, legal requirements for environmental protection are jeopardised and attempts to control digester foaming are costly. There is a clear lack of knowledge about the organisms involved and causes, therefore no informed solutions exist. Molecular DNA techniques, 16SrDNA sequencing and DGGE, will assist in deciphering causes and organisms involved. Research outcomes will present environmental, legal and economical acceptable control strategies for digester foaming to the waste management and water industries.Read moreRead less
The mobilome of the anaerobic methanotrophic archaea Methanoperedenaceae. Microorganisms play a critical role in regulating Earth’s climate, but how they are affected by our rapidly changing environment is not well understood. This Discovery project will study a group of microorganisms found in freshwater sediment that can consume the potent greenhouse gas methane before it is released into the atmosphere. We have developed new methods to investigate how genetic material is exchanged between mic ....The mobilome of the anaerobic methanotrophic archaea Methanoperedenaceae. Microorganisms play a critical role in regulating Earth’s climate, but how they are affected by our rapidly changing environment is not well understood. This Discovery project will study a group of microorganisms found in freshwater sediment that can consume the potent greenhouse gas methane before it is released into the atmosphere. We have developed new methods to investigate how genetic material is exchanged between microorganisms, and how this helps them adapt to environmental changes. Together, this will ultimately help us develop better climate change prediction models and contribute to our understanding of microbial communities that are crucial for environmental health.Read moreRead less
A novel microbial process breaking through the nitrogen cycling. Nitrogen transformation is central to life on Earth. This project will challenge a century-old paradigm that microorganisms must cooperate in a team to convert nitrogen from organic- to inorganic forms. We will carry out the first-ever systematic investigation of a novel process, where a single organism mediates complete ammonification and ammonia oxidation, directly connecting organic- and inorganic nitrogen. By revealing metaboli ....A novel microbial process breaking through the nitrogen cycling. Nitrogen transformation is central to life on Earth. This project will challenge a century-old paradigm that microorganisms must cooperate in a team to convert nitrogen from organic- to inorganic forms. We will carry out the first-ever systematic investigation of a novel process, where a single organism mediates complete ammonification and ammonia oxidation, directly connecting organic- and inorganic nitrogen. By revealing metabolic pathways, characterising ecophysiological properties, isolating key microorganisms and exploring their application potential, this project will change our fundamental understanding of global nitrogen cycling, improve the sustainability of water management, and contribute to the circular economy transitionRead moreRead less
Australian Laureate Fellowships - Grant ID: FL230100159
Funder
Australian Research Council
Funding Amount
$3,330,000.00
Summary
From a descriptive to a predictive understanding of the human microbiome. Microorganisms inhabit every imaginable environment on Earth. Despite advances in characterising microbial communities, our understanding is largely descriptive and a detailed appreciation of their complexity eludes us. This Laureate project aims to transform microbial ecology into a predictive science, through intensive investigation of the human gut microbiome as a model ecosystem. Major challenges in microbiology are ex ....From a descriptive to a predictive understanding of the human microbiome. Microorganisms inhabit every imaginable environment on Earth. Despite advances in characterising microbial communities, our understanding is largely descriptive and a detailed appreciation of their complexity eludes us. This Laureate project aims to transform microbial ecology into a predictive science, through intensive investigation of the human gut microbiome as a model ecosystem. Major challenges in microbiology are expected to be overcome, with new knowledge for predicting how microorganisms influence, and are influenced by, their environment. Ultimately this knowledge can help us manipulate microbial communities in diverse ecosystems to our advantage – protecting the planet’s natural assets, and improving agriculture and human health.Read moreRead less
Molecular mechanisms of pilin glycosylation in Neisseria: a model system for protein glycosylation in bacteria. The disease causing bacteria Neisseria meningitidis and Neisseria gonorrhoeae are important human pathogens. Cell surface structures, called pili, are known to be important in allowing the bacteria to stick to host cells. Genetic and structural studies have identified that the protein subunits, which make up pili, are glycosylated - modified by the addition of sugars. Until recently ....Molecular mechanisms of pilin glycosylation in Neisseria: a model system for protein glycosylation in bacteria. The disease causing bacteria Neisseria meningitidis and Neisseria gonorrhoeae are important human pathogens. Cell surface structures, called pili, are known to be important in allowing the bacteria to stick to host cells. Genetic and structural studies have identified that the protein subunits, which make up pili, are glycosylated - modified by the addition of sugars. Until recently glycosylation of Gram-negative bacterial proteins was not thought to occur, however our recent work with these bacteria, and other groups studying Pseudomonas and Campylobacter, have shown that this process may be widespread. In our previous studies, we have identified and analysed a number of genes involved in pili glycosylation, in bacteria, which make known sugar structures. We have used this information to developed models for how the biochemistry and physiology of the glycosylation system may work. With a well-established structure and many genes already identified, glycosylation in Neisseria represents the best available model system to study this novel and important process. In the proposed study we describe experiments planned to test our models and reveal the molecular detail of this process. This study could lead to major advances in our understanding of this process and, when understood, may have future applications in biotechnology.Read moreRead less
Illuminating the microbial world using genome-based fluorescence microscopy. Our understanding of microbial diversity on Earth has been fundamentally changed by metagenomic characterisation of natural ecosystems. Traditional approaches for visualising microbial communities are time-consuming and provide limited information about the identity of specific microorganisms. The proposed research aims to combine single cell genomics and super resolution microscopy for novel, high-throughput, genome-b ....Illuminating the microbial world using genome-based fluorescence microscopy. Our understanding of microbial diversity on Earth has been fundamentally changed by metagenomic characterisation of natural ecosystems. Traditional approaches for visualising microbial communities are time-consuming and provide limited information about the identity of specific microorganisms. The proposed research aims to combine single cell genomics and super resolution microscopy for novel, high-throughput, genome-based techniques to visualise microorganisms, plasmids and viruses, with strain level specificity. The application of these highly scalable approaches will provide comprehensive and unprecedented insight into the fine-scale dynamics and evolution of environmentally and biotechnologically important microbial communities.Read moreRead less