The costs and consequences of resistance to stress in microbial systems. The coexistence of antibiotic resistant and sensitive bacteria in microbial communities represents a paradox. Combining novel ecological models and competition experiments, this project aims to investigate how the pulsing of antibiotics and resources affects the coexistence of resistant and sensitive bacteria. This project expects to generate new knowledge into how the complex non-equilibrium dynamics of natural systems fee ....The costs and consequences of resistance to stress in microbial systems. The coexistence of antibiotic resistant and sensitive bacteria in microbial communities represents a paradox. Combining novel ecological models and competition experiments, this project aims to investigate how the pulsing of antibiotics and resources affects the coexistence of resistant and sensitive bacteria. This project expects to generate new knowledge into how the complex non-equilibrium dynamics of natural systems feeds back to regulate the spread of antibiotic resistance in microbial communities. This should advance our fundamental understanding of microbial competition, and provide a foundation for the development of new ecologically-aware strategies for managing resistance.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE230100373
Funder
Australian Research Council
Funding Amount
$447,320.00
Summary
The role of resource fluctuations in structuring microbial communities. The flow of nutrients through ecological systems fluctuates through time and yet the impact this variability has on the maintenance of biodiversity is poorly understood. Drawing on emerging theory and a tight integration of modelling and experiments in a model microbial system, this project aims to investigate the impact of modified nutrient regimes on the structure and stability of ecological communities. This project expec ....The role of resource fluctuations in structuring microbial communities. The flow of nutrients through ecological systems fluctuates through time and yet the impact this variability has on the maintenance of biodiversity is poorly understood. Drawing on emerging theory and a tight integration of modelling and experiments in a model microbial system, this project aims to investigate the impact of modified nutrient regimes on the structure and stability of ecological communities. This project expects to generate new knowledge at the forefront of research into diversity maintenance, ecosystem functioning and higher-order interactions. The outcomes should provide a deep mechanistic understanding of microbial community dynamics, with applications from animal health to environmental flows and insect pest management.Read moreRead less
The mobilome of the anaerobic methanotrophic archaea Methanoperedenaceae. Microorganisms play a critical role in regulating Earth’s climate, but how they are affected by our rapidly changing environment is not well understood. This Discovery project will study a group of microorganisms found in freshwater sediment that can consume the potent greenhouse gas methane before it is released into the atmosphere. We have developed new methods to investigate how genetic material is exchanged between mic ....The mobilome of the anaerobic methanotrophic archaea Methanoperedenaceae. Microorganisms play a critical role in regulating Earth’s climate, but how they are affected by our rapidly changing environment is not well understood. This Discovery project will study a group of microorganisms found in freshwater sediment that can consume the potent greenhouse gas methane before it is released into the atmosphere. We have developed new methods to investigate how genetic material is exchanged between microorganisms, and how this helps them adapt to environmental changes. Together, this will ultimately help us develop better climate change prediction models and contribute to our understanding of microbial communities that are crucial for environmental health.Read moreRead less
A novel microbial process breaking through the nitrogen cycling. Nitrogen transformation is central to life on Earth. This project will challenge a century-old paradigm that microorganisms must cooperate in a team to convert nitrogen from organic- to inorganic forms. We will carry out the first-ever systematic investigation of a novel process, where a single organism mediates complete ammonification and ammonia oxidation, directly connecting organic- and inorganic nitrogen. By revealing metaboli ....A novel microbial process breaking through the nitrogen cycling. Nitrogen transformation is central to life on Earth. This project will challenge a century-old paradigm that microorganisms must cooperate in a team to convert nitrogen from organic- to inorganic forms. We will carry out the first-ever systematic investigation of a novel process, where a single organism mediates complete ammonification and ammonia oxidation, directly connecting organic- and inorganic nitrogen. By revealing metabolic pathways, characterising ecophysiological properties, isolating key microorganisms and exploring their application potential, this project will change our fundamental understanding of global nitrogen cycling, improve the sustainability of water management, and contribute to the circular economy transitionRead moreRead less
Discovery Early Career Researcher Award - Grant ID: DE190100008
Funder
Australian Research Council
Funding Amount
$387,103.00
Summary
Exploring the evolution and ecology of non-photosynthetic Cyanobacteria. This project aims to contribute and expand our rudimentary understanding of non-photosynthetic Cyanobacteria by obtaining representative genome sequences using metagenomics. The dogma that all Cyanobacteria are photosynthetic has recently been challenged by the discovery of non-photosynthetic lineages. This project expects to obtain representative genome sequences using metagenomics to predict surface structures. The expect ....Exploring the evolution and ecology of non-photosynthetic Cyanobacteria. This project aims to contribute and expand our rudimentary understanding of non-photosynthetic Cyanobacteria by obtaining representative genome sequences using metagenomics. The dogma that all Cyanobacteria are photosynthetic has recently been challenged by the discovery of non-photosynthetic lineages. This project expects to obtain representative genome sequences using metagenomics to predict surface structures. The expected outcomes from this project includes providing insights into the function and evolution of non-photosynthetic Cyanobacteria and their viruses, and pure or enriched cultures to enable future studies.Read moreRead less
Australian Laureate Fellowships - Grant ID: FL230100159
Funder
Australian Research Council
Funding Amount
$3,330,000.00
Summary
From a descriptive to a predictive understanding of the human microbiome. Microorganisms inhabit every imaginable environment on Earth. Despite advances in characterising microbial communities, our understanding is largely descriptive and a detailed appreciation of their complexity eludes us. This Laureate project aims to transform microbial ecology into a predictive science, through intensive investigation of the human gut microbiome as a model ecosystem. Major challenges in microbiology are ex ....From a descriptive to a predictive understanding of the human microbiome. Microorganisms inhabit every imaginable environment on Earth. Despite advances in characterising microbial communities, our understanding is largely descriptive and a detailed appreciation of their complexity eludes us. This Laureate project aims to transform microbial ecology into a predictive science, through intensive investigation of the human gut microbiome as a model ecosystem. Major challenges in microbiology are expected to be overcome, with new knowledge for predicting how microorganisms influence, and are influenced by, their environment. Ultimately this knowledge can help us manipulate microbial communities in diverse ecosystems to our advantage – protecting the planet’s natural assets, and improving agriculture and human health.Read moreRead less
Illuminating the microbial world using genome-based fluorescence microscopy. Our understanding of microbial diversity on Earth has been fundamentally changed by metagenomic characterisation of natural ecosystems. Traditional approaches for visualising microbial communities are time-consuming and provide limited information about the identity of specific microorganisms. The proposed research aims to combine single cell genomics and super resolution microscopy for novel, high-throughput, genome-b ....Illuminating the microbial world using genome-based fluorescence microscopy. Our understanding of microbial diversity on Earth has been fundamentally changed by metagenomic characterisation of natural ecosystems. Traditional approaches for visualising microbial communities are time-consuming and provide limited information about the identity of specific microorganisms. The proposed research aims to combine single cell genomics and super resolution microscopy for novel, high-throughput, genome-based techniques to visualise microorganisms, plasmids and viruses, with strain level specificity. The application of these highly scalable approaches will provide comprehensive and unprecedented insight into the fine-scale dynamics and evolution of environmentally and biotechnologically important microbial communities.Read moreRead less
Understanding evolution of dominant bacteria inhabiting the rodent gut . The gut microbiome is central to animal health and immune function, however we have an incomplete understanding of how this important symbiotic ecosystem evolved. By approaching this knowledge gap from a historical perspective and using real-time observation, this project will address how the gut community evolved with the rodent host and how members of that community respond to new selective pressures. The significance of ....Understanding evolution of dominant bacteria inhabiting the rodent gut . The gut microbiome is central to animal health and immune function, however we have an incomplete understanding of how this important symbiotic ecosystem evolved. By approaching this knowledge gap from a historical perspective and using real-time observation, this project will address how the gut community evolved with the rodent host and how members of that community respond to new selective pressures. The significance of these findings is in their capacity to inform our understanding of the relationship between host and microbe, not only within a key model system, but by extrapolation to other host-microbe systems. Read moreRead less
Linking individual traits, the gut microbiome and parasite load in wildlife. This project aims to apply principles of community ecology to the gut microbiome of an urban exploiter – the common brushtail possum - to reveal how animal traits influence individual variation in the load of gut parasites that cause disease in both humans and wildlife. By combining assays defining the behavioural and physiological states of individuals with sophisticated analyses of their gut microbiome, our project wi ....Linking individual traits, the gut microbiome and parasite load in wildlife. This project aims to apply principles of community ecology to the gut microbiome of an urban exploiter – the common brushtail possum - to reveal how animal traits influence individual variation in the load of gut parasites that cause disease in both humans and wildlife. By combining assays defining the behavioural and physiological states of individuals with sophisticated analyses of their gut microbiome, our project will provide a new, yet crucial, perspective on how and why diseases spread. Our discoveries will help understand and manage the burden of infectious diseases from parasites in and beyond our cities and across the human-wildlife interface; essential for improving human and wildlife health in an increasingly urbanised Australia.Read moreRead less
Biogeochemical remediation approaches for PFAS contaminated environments. This project aims to identify and harvest microorganisms capable of directly or indirectly affecting PFOS or PFOA degradation in the environment. Fluorinated compounds such as PFOS and PFOA in firefighting foams are contaminants of concern now routinely detected in contaminated groundwater and soil globally. Understanding the role of microorganisms, and the biogeochemical processes they perform in relation to fluorinated c ....Biogeochemical remediation approaches for PFAS contaminated environments. This project aims to identify and harvest microorganisms capable of directly or indirectly affecting PFOS or PFOA degradation in the environment. Fluorinated compounds such as PFOS and PFOA in firefighting foams are contaminants of concern now routinely detected in contaminated groundwater and soil globally. Understanding the role of microorganisms, and the biogeochemical processes they perform in relation to fluorinated compounds, will inform handling of contaminated sites and lead to development of cost effective and sustainable remediation technologies. Read moreRead less