Stochastic Modelling of Genetic Regulatory Networks: Subtitle - Genetic Regulation is a Noisy Business. The completion of the human genome marked the culmination of one hundred years of reductionist science in cell biology. Although further bioinformatics analysis will continue, the focus is shifting towards synthesis and understanding how the regulatory genetic components dynamically interact to form functional phenotypes. The key to this is the understanding of the roles of stochasticity in ....Stochastic Modelling of Genetic Regulatory Networks: Subtitle - Genetic Regulation is a Noisy Business. The completion of the human genome marked the culmination of one hundred years of reductionist science in cell biology. Although further bioinformatics analysis will continue, the focus is shifting towards synthesis and understanding how the regulatory genetic components dynamically interact to form functional phenotypes. The key to this is the understanding of the roles of stochasticity in cellular processes. This project will explore these roles and will develop an integrated complex systems modelling, simulation and visualisation framework. This will be used on an exemplar application for lineage commitment in haematopoiesis and for exploring and validating genetic regulatory models in general.Read moreRead less
Multiscale stochastic modelling of genetic regulatory mechanisms. The completion of the human genome marked the culmination of one hundred years of reductionist science in cell biology. Although further bioinformatics analysis will continue, the focus is shifting towards synthesis and understanding how the regulatory genetic components dynamically interact to form functional phenotypes. The key to this is the understanding of the roles of stochasticity in cellular processes. This project will ex ....Multiscale stochastic modelling of genetic regulatory mechanisms. The completion of the human genome marked the culmination of one hundred years of reductionist science in cell biology. Although further bioinformatics analysis will continue, the focus is shifting towards synthesis and understanding how the regulatory genetic components dynamically interact to form functional phenotypes. The key to this is the understanding of the roles of stochasticity in cellular processes. This project will explore these roles and will develop an integrated complex systems modelling, simulation and visualisation framework for exploring and validating genetic regulatory models in general. This will be used on an exemplar application for understanding the induction process in lambda phage.Read moreRead less
Use of Interval Arithmetic and GRID Computing in Computational Molecular Science: Bounding Errors and Locating Global Minima. Catastrophic failure of the Ariane 5 rocket in 1996 and the inability of Patriot missile systems to reach their targets during the 1991 Gulf war were both attributed to numerical computing errors. Less dramatic, but in a similar vein, this project aims to study the numerical stability of contemporary computational molecular science applications. The focus will be on linea ....Use of Interval Arithmetic and GRID Computing in Computational Molecular Science: Bounding Errors and Locating Global Minima. Catastrophic failure of the Ariane 5 rocket in 1996 and the inability of Patriot missile systems to reach their targets during the 1991 Gulf war were both attributed to numerical computing errors. Less dramatic, but in a similar vein, this project aims to study the numerical stability of contemporary computational molecular science applications. The focus will be on linear scaling electronic structure codes, methods that are critical to the study of nano- and bio-materials, and are therefore of great importance to our economic future and medical well being. The project will build expertise within Australia in the area of interval arithmetic, an area that is currently poorly represented.Read moreRead less
Multivariate Algorithmics: Meeting the Challenge of Real World computational complexity. This Project will result in better methods for designing the algorithms that all computer applications depend on. Algorithms are the instruction sets that tell computers how to process information. Some information processing tasks are intrinsically difficult, even for computers working at enormous speeds. This Project will deliver new mathematical approaches to overcome these difficulties. More efficient al ....Multivariate Algorithmics: Meeting the Challenge of Real World computational complexity. This Project will result in better methods for designing the algorithms that all computer applications depend on. Algorithms are the instruction sets that tell computers how to process information. Some information processing tasks are intrinsically difficult, even for computers working at enormous speeds. This Project will deliver new mathematical approaches to overcome these difficulties. More efficient algorithmic approaches for difficult problems enable advances in all areas of computer applications such as medical diagnosis and health prediction, national security, communications efficiency, industrial productivity and all fields of science and engineering.Read moreRead less
Algorithms and computation in four-dimensional topology. This project will establish Australia as a world leader in computational topology, particularly in the all-important areas of topology in three and four dimensions. In four dimensions this work will be truly groundbreaking; until now the field has seen little development due to the complexity of the algorithms and computations required, and the applicant is in the unique position of having the necessary tools to make significant progress ....Algorithms and computation in four-dimensional topology. This project will establish Australia as a world leader in computational topology, particularly in the all-important areas of topology in three and four dimensions. In four dimensions this work will be truly groundbreaking; until now the field has seen little development due to the complexity of the algorithms and computations required, and the applicant is in the unique position of having the necessary tools to make significant progress in a feasible time frame. In three dimensions this project will strengthen the distinguished computational topology community in Melbourne, led by pioneers such as Rubinstein, Goodman, Hodgson as well as the applicant himself.Read moreRead less
Algebraic Methods in Design and Analysis of Stream Ciphers. The project investigates the problem of communication security in the mobile environment where both confidentiality and authenticity are of prime concern. Stream ciphers are a very natural choice in mobile environment as they provide an efficient cryptographic protection using a limited computing resources. We model stream cipher as a system of multivariate equations. In this approach, security of stream ciphers can be measured as the c ....Algebraic Methods in Design and Analysis of Stream Ciphers. The project investigates the problem of communication security in the mobile environment where both confidentiality and authenticity are of prime concern. Stream ciphers are a very natural choice in mobile environment as they provide an efficient cryptographic protection using a limited computing resources. We model stream cipher as a system of multivariate equations. In this approach, security of stream ciphers can be measured as the complexity of an algorithm that solves the appropriate system of equations. This project leads to new techniques for the design and analysis of stream ciphers.Read moreRead less
Algebraic Models of Stream Ciphers. The project investigates communication security in the mobile environment where both confidentiality and authenticity are of a prime concern. Stream ciphers are a natural choice in mobile environments as they provide an efficient cryptographic protection using a limited computing resources. We treat stream ciphers as algebraic objects whose properties fully determine their cryptographic strength. We first analyse existing stream ciphers showing their algebraic ....Algebraic Models of Stream Ciphers. The project investigates communication security in the mobile environment where both confidentiality and authenticity are of a prime concern. Stream ciphers are a natural choice in mobile environments as they provide an efficient cryptographic protection using a limited computing resources. We treat stream ciphers as algebraic objects whose properties fully determine their cryptographic strength. We first analyse existing stream ciphers showing their algebraic properties and later we derive a design methodology for provably secure stream ciphers. The project leads to new secure and efficient designs for stream ciphers that are the preferred cryptographic tools used in Australian industry.Read moreRead less
Algebraic Analysis of Cryptosystems. This project studies an (new) algebraic approach to cryptanalysis of modern block ciphers. The approach works for all cryptosystems that use either small S-boxes, or their algebraic structure can be described by a system of overdefined quadratic equations. The cryptosystems that are potentially breakable using this approach are Rijndael and Serpent - the two top finalists of the Advanced Encryption Standard contest. The project also explores how this approach ....Algebraic Analysis of Cryptosystems. This project studies an (new) algebraic approach to cryptanalysis of modern block ciphers. The approach works for all cryptosystems that use either small S-boxes, or their algebraic structure can be described by a system of overdefined quadratic equations. The cryptosystems that are potentially breakable using this approach are Rijndael and Serpent - the two top finalists of the Advanced Encryption Standard contest. The project also explores how this approach can be applied to design new and more powerful factoring algorithms. The project has an explosive potential to redefine the theory and practice of modern cryptography.Read moreRead less
Advanced computational techniques for micro/nano multiscale systems of NEMS/BioMEMS. The outcome of this project will have the following benefits to Australia.
1) It will improve the research level in the area of multiscale simulation of NEMS/BioMEMS;
2) The project will be beneficial to possibly establish new industries in the areas of nanotechnology as well as to make good use of today's microelectronics, mircofabrication and computer technology that have already established in Australia;
....Advanced computational techniques for micro/nano multiscale systems of NEMS/BioMEMS. The outcome of this project will have the following benefits to Australia.
1) It will improve the research level in the area of multiscale simulation of NEMS/BioMEMS;
2) The project will be beneficial to possibly establish new industries in the areas of nanotechnology as well as to make good use of today's microelectronics, mircofabrication and computer technology that have already established in Australia;
3) The manpower trained by this project in the areas of multi-scale simulation of MEMS/NEMS/BioMEMS will provide a crucial support for the future industry of Australia.
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Predicting Roll Angular Motion. The roll angular motion, or RAM, of a ship denotes its oscillation about its longitudinal axis, primarily caused by wave motion. The ability to predict RAM is of significant practical utility. For example, in defence-related work it plays a role in determining accuracy of weapons systems. We suggest a technique for predicting RAM. Our method borrows from both parametric and nonparametric statistics, in that a sinusoidal model is fitted to data but only over a ....Predicting Roll Angular Motion. The roll angular motion, or RAM, of a ship denotes its oscillation about its longitudinal axis, primarily caused by wave motion. The ability to predict RAM is of significant practical utility. For example, in defence-related work it plays a role in determining accuracy of weapons systems. We suggest a technique for predicting RAM. Our method borrows from both parametric and nonparametric statistics, in that a sinusoidal model is fitted to data but only over a short time interval. We show how to both assess and correct error. In particular, we propose methods for attaching probabilities to the accuracy of predictions.Read moreRead less