Dynamic evolution of mutation rates: causes and impacts on genomic analysis. This project aims to illuminate the role of variation in mutation rate in driving evolutionary change. Mutation rate is a core parameter in evolutionary analyses in essential applications including epidemiology, conservation and medicine, yet remains a “black box” given arbitrary universal values. This project will take a whole-of-biodiversity approach to understanding the forces shaping mutation rate, impact on evoluti ....Dynamic evolution of mutation rates: causes and impacts on genomic analysis. This project aims to illuminate the role of variation in mutation rate in driving evolutionary change. Mutation rate is a core parameter in evolutionary analyses in essential applications including epidemiology, conservation and medicine, yet remains a “black box” given arbitrary universal values. This project will take a whole-of-biodiversity approach to understanding the forces shaping mutation rate, impact on evolution of biodiversity and effect on accuracy and precision of phylogenetic analyses. Using Australian case studies, the expected outcome of this project will be a greater understanding variation in mutation rate between species, providing significant benefits in developing more sophisticated and reliable phylogenetic analyses.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE230100003
Funder
Australian Research Council
Funding Amount
$387,373.00
Summary
The evolution of venom and its role in shaping biodiversity. This project aims to study how venom, nature's most powerful weapon, evolves and shapes biodiversity. Using the iconic Australian and New Guinean venomous snakes as a model, this project expects to develop a novel approach to profile venom composition from museum specimens, test competing hypotheses on the evolution of venoms, and test for the association between the evolution of venoms and the evolution of diversity in species richnes ....The evolution of venom and its role in shaping biodiversity. This project aims to study how venom, nature's most powerful weapon, evolves and shapes biodiversity. Using the iconic Australian and New Guinean venomous snakes as a model, this project expects to develop a novel approach to profile venom composition from museum specimens, test competing hypotheses on the evolution of venoms, and test for the association between the evolution of venoms and the evolution of diversity in species richness and morphology. Expected outcomes include the largest venom database for any animal group and a better understanding of how venoms evolve and what role they play in earth’s biodiversity. The generated venom data has potential to be used in future studies to aid in the development of anti-venoms and drugs.Read moreRead less
Explaining virus diversity. To prevent virus pandemics, it is necessary to understand how viruses evolve. This project aims to reveal the long-term trends, processes and drivers of RNA virus diversity and evolution. Through the metagenomic sequencing of the viromes of Australian animals that mark evolutionary innovations and transitions this project will reshape our knowledge of virus evolution and disease emergence. Expected outcomes will be a new understanding of how virus diversity is created ....Explaining virus diversity. To prevent virus pandemics, it is necessary to understand how viruses evolve. This project aims to reveal the long-term trends, processes and drivers of RNA virus diversity and evolution. Through the metagenomic sequencing of the viromes of Australian animals that mark evolutionary innovations and transitions this project will reshape our knowledge of virus evolution and disease emergence. Expected outcomes will be a new understanding of how virus diversity is created, how virus phenotypes have changed through time, how often viruses jump to new host species, and how major events in animal evolution have shaped virus diversity. Key benefits include new measures of the viral burden faced by Australia’s native animals and of ecosystem health.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE230100014
Funder
Australian Research Council
Funding Amount
$432,469.00
Summary
Comparative genomics to improve conservation planning in Australian deserts. This project aims to locate hotspots of diversity in Australia’s vast, flat deserts and to quantify how well these areas are captured under the National Reserve System. I will establish a network of international and national collaborators and improve knowledge on how animals responded to past environmental change. The anticipated outcome of this project is to improve our ability to understand, measure and preserve our ....Comparative genomics to improve conservation planning in Australian deserts. This project aims to locate hotspots of diversity in Australia’s vast, flat deserts and to quantify how well these areas are captured under the National Reserve System. I will establish a network of international and national collaborators and improve knowledge on how animals responded to past environmental change. The anticipated outcome of this project is to improve our ability to understand, measure and preserve our unique desert biodiversity and the evolutionary processes that sustain it, using our remarkably diverse reptile fauna as a model system. In the face of current, rapid environmental change, this has never been more important, and will provide a tool for biodiversity survival.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE240100501
Funder
Australian Research Council
Funding Amount
$423,232.00
Summary
Serpent sensory innovation in the evolutionary transition from land to sea. This project aims to investigate the mechanisms underlying sensory adaptation, which underpins the behavioural capacity of animals to adapt to environmental change. This research will harness innovative phenotypic imaging and genomic sequencing, to study the coordinated changes among sensory systems in a range of ecologically diverse snakes. Expected outcomes include a large database of 3D digital anatomical models from ....Serpent sensory innovation in the evolutionary transition from land to sea. This project aims to investigate the mechanisms underlying sensory adaptation, which underpins the behavioural capacity of animals to adapt to environmental change. This research will harness innovative phenotypic imaging and genomic sequencing, to study the coordinated changes among sensory systems in a range of ecologically diverse snakes. Expected outcomes include a large database of 3D digital anatomical models from Australian and international museum collections, and new knowledge on the genetic processes influencing sensory receptor evolution in vertebrates. The should provide significant benefits for conservation by using sensory adaptability as a framework for estimating potential extinction risk for vulnerable species.Read moreRead less
Is New Guinea the missing link for understanding Australia’s rainforests? This project aims to understand the extent to which the animals in Australia have shared histories with animals from the islands of Melanesia, and especially New Guinea. Key outcomes will be identification of hotspots of unique and high evolutionary diversity across both regions, and understanding of whether New Guinea has been an overall refuge or source for rainforest animals as Australia became more arid over the last 2 ....Is New Guinea the missing link for understanding Australia’s rainforests? This project aims to understand the extent to which the animals in Australia have shared histories with animals from the islands of Melanesia, and especially New Guinea. Key outcomes will be identification of hotspots of unique and high evolutionary diversity across both regions, and understanding of whether New Guinea has been an overall refuge or source for rainforest animals as Australia became more arid over the last 20 million years. Expected benefits include addressing fundamental gaps in our knowledge of the history of both the Australian continent and its resident biota such as when landbridges first formed with New Guinea, and the identification of priority areas for conservation investment in both Australian and Melanesia.Read moreRead less
Integrating theory and data to model evolution under a changing climate. This project aims to develop an innovative approach that integrates diverse data sources, from genetic sequences to geographic distributions, to improve inference of evolutionary dynamics. This will provide a powerful and efficient new method for understanding species’ responses to climate change, demonstrated by inferring past, current and future climate adaptability in a diverse and ecologically important Australian plant ....Integrating theory and data to model evolution under a changing climate. This project aims to develop an innovative approach that integrates diverse data sources, from genetic sequences to geographic distributions, to improve inference of evolutionary dynamics. This will provide a powerful and efficient new method for understanding species’ responses to climate change, demonstrated by inferring past, current and future climate adaptability in a diverse and ecologically important Australian plant family. Expected outcomes include enrichment of evolutionary theory and software tools to assess species' vulnerability to climate change. These outcomes will bring significant benefits to improve knowledge and protection of Australian biota and maximise returns on Australia's investment in biodiversity databases.Read moreRead less
Plastic brains: Neural adaptations to changing environments in reptiles. The project aims to quantify brain anatomy on an unprecedented scale in comparative neurobiology. Focusing on Australia’s diverse and extensive collection of reptiles, including goannas, dragons and venomous snakes, the project expects to generate new knowledge on the evolution of brains as these animals adapted to new habitats and climates. Data will be collected by cutting-edge micro-CT technology and advanced phylogeneti ....Plastic brains: Neural adaptations to changing environments in reptiles. The project aims to quantify brain anatomy on an unprecedented scale in comparative neurobiology. Focusing on Australia’s diverse and extensive collection of reptiles, including goannas, dragons and venomous snakes, the project expects to generate new knowledge on the evolution of brains as these animals adapted to new habitats and climates. Data will be collected by cutting-edge micro-CT technology and advanced phylogenetic techniques, which will be complemented by detailed neuroanatomy. Expected outcomes include enhanced understanding of the effects of temperature on brains, and a large database of 3D digital anatomical models. A major benefit includes a greater ability to mitigate the effects of environmental change.Read moreRead less
Asgard archaea: the first eukaryotic cells? . This project aims to uncover the role of unique microorganisms (Asgard archaea) in the origin of eukaryotes. These archaea may represent a ‘missing-link’ in eukaryotic evolution and are in abundance in the stromatolites in Shark Bay, Western Australia. Employing an innovative and interdisciplinary approach of cutting-edge molecular biology and high-resolution microscopy, this project expects to generate insights into fundamental aspects of evolution ....Asgard archaea: the first eukaryotic cells? . This project aims to uncover the role of unique microorganisms (Asgard archaea) in the origin of eukaryotes. These archaea may represent a ‘missing-link’ in eukaryotic evolution and are in abundance in the stromatolites in Shark Bay, Western Australia. Employing an innovative and interdisciplinary approach of cutting-edge molecular biology and high-resolution microscopy, this project expects to generate insights into fundamental aspects of evolution and cell biology. Expected outcomes include the discovery of unique branches of life and the proposal of new models for the emergence of eukaryotes. This research should allow for benefits across a spectrum of environmental and social gains, including improved ties with Indigenous communities.Read moreRead less
Data-driven phylodynamics: molecular evolution to epidemiology. This project aims to uncover how different environmental and ecological variables drive the emergence of pathogens with increased transmissibility or virulence, known as variants. This will be achieved through extensive analyses of virus genome data.
This project expects to generate new knowledge in the field of pathogen evolution using novel data-driven statistical techniques for genomic analyses.
Expected outcomes of this proje ....Data-driven phylodynamics: molecular evolution to epidemiology. This project aims to uncover how different environmental and ecological variables drive the emergence of pathogens with increased transmissibility or virulence, known as variants. This will be achieved through extensive analyses of virus genome data.
This project expects to generate new knowledge in the field of pathogen evolution using novel data-driven statistical techniques for genomic analyses.
Expected outcomes of this project are a new understanding of the circumstances under which pathogen variants emerge and a suite of statistical tools to exploit the vast genome data available.
This should provide significant benefits by generating new knowledge with the potential to improve biosecurity, agriculture, and heath.
Read moreRead less