Statistical and Mathematical Analyses of Sequence and Array Data. Development of mathematical and statistical methods and tools in bioinformation science will ensure that Australia is at the cutting-edge of modern biology. This will enhance Australia's reputation for dealing with the exponentially growing body of genomic data emerging from life sciences laboratories throughout the world. The proposed project has a broad range of potential applications in biotechnology, particularly in the medic ....Statistical and Mathematical Analyses of Sequence and Array Data. Development of mathematical and statistical methods and tools in bioinformation science will ensure that Australia is at the cutting-edge of modern biology. This will enhance Australia's reputation for dealing with the exponentially growing body of genomic data emerging from life sciences laboratories throughout the world. The proposed project has a broad range of potential applications in biotechnology, particularly in the medical and agricultural industries. Examples include improvements to livestock, in plant breeding such as drought resistance, and better genetic disease diagnosis, including earlier cancer diagnosis, and personalised treatment.Read moreRead less
Mathematical Methods for Next Generation Sequencing. The emergence of a new generation of high throughput genomic sequencing technologies is providing unprecedented opportunities for biological research. Hidden within the huge amounts of data generated by this technology is information about the expression and regulation of genes, and the complex functional purpose of non-coding, so called 'junk', DNA. Development of mathematical and statistical tools is essential to interpreting these data. The ....Mathematical Methods for Next Generation Sequencing. The emergence of a new generation of high throughput genomic sequencing technologies is providing unprecedented opportunities for biological research. Hidden within the huge amounts of data generated by this technology is information about the expression and regulation of genes, and the complex functional purpose of non-coding, so called 'junk', DNA. Development of mathematical and statistical tools is essential to interpreting these data. The proposed research will enhance Australia's reputation for developing novel quantitative techniques at the cutting edge of modern biology. The proposed project has a broad range of potential applications in biotechnology, particularly in the medical and agricultural industries.Read moreRead less
New computational methods study on protein function prediction. The proposed research aims to develop new computational methods to solve one of the most important bioinformatics problems in the post-genome era. This project will expand the knowledge on protein sequence-structure-function relationship, provide new analysis methods and predict the functions of novel proteins. This project will strengthen Australia's reputation for research excellence.
House hunting honey bees: speed-accuracy trade-offs in collective decision-making. This project will uncover the mechanisms that underlie the trade-off between speed and accuracy in collective decision-making. We will study two species of honey bee that differ in the relative importance of speed and accuracy when deciding on a new home. Natural selection has shaped the decision-making process differently in the two species, one favouring speed, the other accuracy. We will use the natural wisdom ....House hunting honey bees: speed-accuracy trade-offs in collective decision-making. This project will uncover the mechanisms that underlie the trade-off between speed and accuracy in collective decision-making. We will study two species of honey bee that differ in the relative importance of speed and accuracy when deciding on a new home. Natural selection has shaped the decision-making process differently in the two species, one favouring speed, the other accuracy. We will use the natural wisdom evolved by the bees to design new mathematical models of collective decision-making. These can be applied to create efficient decision-making tools that will be useful for any large organization.Read moreRead less
Functionally characterizing mammalian microRNAs and mRNA interactions controlling cell division. This project addresses some of the most burning issues in molecular biology and genetic research, and the results will be widely applicable to a broad range of fields, including biotechnology, animal breeding, agricultural production, genetic engineering, medical science, and computational biology. By understanding the regulatory potential of microRNA molecules, we will understand more about species ....Functionally characterizing mammalian microRNAs and mRNA interactions controlling cell division. This project addresses some of the most burning issues in molecular biology and genetic research, and the results will be widely applicable to a broad range of fields, including biotechnology, animal breeding, agricultural production, genetic engineering, medical science, and computational biology. By understanding the regulatory potential of microRNA molecules, we will understand more about species diversity, regulatory networks, and plant and animal development. The early adoption of multi-gigabase next-generation sequencing technology in Australia provides rare and exciting opportunity to lead the world in genome-scale research, and to ensure that Australia has the necessary skill base to remain internationally competitive in this field.Read moreRead less
Structure and informatics of the genetic code. Recent advances in biotechnology have seen its emergence as a highly
quantitative, numerically-based discipline. To exploit the available
data to the full will require, alongside computing power, new
analytical techniques. This project aims to develop such techniques,
by handling the systematics of the genetic code with methods derived
from theoretical physics and chemistry. Expected outcomes include a
dynamical (quantum field theory) model ....Structure and informatics of the genetic code. Recent advances in biotechnology have seen its emergence as a highly
quantitative, numerically-based discipline. To exploit the available
data to the full will require, alongside computing power, new
analytical techniques. This project aims to develop such techniques,
by handling the systematics of the genetic code with methods derived
from theoretical physics and chemistry. Expected outcomes include a
dynamical (quantum field theory) model of phylogenetic branching,
analyses of nucleic acid structure and content (spin chain models of
RNA binding and of DNA open reading frames), and insights into the
origin of the code itself (via numerical codon similarity measures).
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Linkage Infrastructure, Equipment And Facilities - Grant ID: LE0347727
Funder
Australian Research Council
Funding Amount
$400,000.00
Summary
Computational infrastructure for high-throughput genome bioinformatics. We propose a high-performance computing and web facility for genome bioinformatics. It will provide a common software development environment in support of molecular biosciences, systems biology and complex systems modelling at the Institute for Molecular Bioscience at University of Queensland, and at Queensland University of Technology. The platform will support Australia's first genome-scale bioinformatics research website ....Computational infrastructure for high-throughput genome bioinformatics. We propose a high-performance computing and web facility for genome bioinformatics. It will provide a common software development environment in support of molecular biosciences, systems biology and complex systems modelling at the Institute for Molecular Bioscience at University of Queensland, and at Queensland University of Technology. The platform will support Australia's first genome-scale bioinformatics research website, with unique software and mirrors of the IBM Biological Pattern Discovery, UC San Diego MEME/MetaMEME/MAST, and NGI comparative genomics websites. Australian/NZ researchers will access the facility at no cost for high-throughput use of unique software, website mirrors and other important tools for genome bioinformatics.Read moreRead less
Manipulation of transcription factors that control plant architecture. This project will provide fundamental knowledge about how plant body plans are constructed and elaborated. In particular this proposal could influence agriculture in two manners. First, we will examine the ability to control infestations of parasitic plants in the field using the expression of small RNA molecules and second, we will determine whether manipulation of expression of specific transcription factors can alter the ....Manipulation of transcription factors that control plant architecture. This project will provide fundamental knowledge about how plant body plans are constructed and elaborated. In particular this proposal could influence agriculture in two manners. First, we will examine the ability to control infestations of parasitic plants in the field using the expression of small RNA molecules and second, we will determine whether manipulation of expression of specific transcription factors can alter the characteristics of secondary growth plants.Read moreRead less
Optimising vascularisation of tissue engineering chambers for construction of robust tissues. We have produced a device that has commercial application in several fields of basic science, biotechnology and bioengineering. When its full potential is achieved, our innovative organ chamber will strengthen Australia's standing in the biotechnology field and enrich specific applications. The knowledge gained from understanding the growth of blood vessels will benefit several fields including chemical ....Optimising vascularisation of tissue engineering chambers for construction of robust tissues. We have produced a device that has commercial application in several fields of basic science, biotechnology and bioengineering. When its full potential is achieved, our innovative organ chamber will strengthen Australia's standing in the biotechnology field and enrich specific applications. The knowledge gained from understanding the growth of blood vessels will benefit several fields including chemical bioengineering, tissue engineering and repair, polymer chemistry, therapeutics in many areas (like cancer, heart disease, diabetes), hormone manufacture for agricultural, veterinary and medical purposes and cosmetics manufacture. The project will train several post-doctoral fellows and PhD students in this cutting edge field of researchRead moreRead less
Linkage Infrastructure, Equipment And Facilities - Grant ID: LE0453608
Funder
Australian Research Council
Funding Amount
$579,230.00
Summary
Multifunctional confocal laser scanning microscope with time resolved and two photon imaging and fluorescence correlation capabilities. We seek to establish an Australian first confocal laser scanning microscope with time resolved imaging and fluorescence correlation spectroscopy capabilities. Its advantages include ultrasensitive detection of weak fluorescent emissions against high autofluorescent background by using fluorescence lifetime signatures, with over three orders of magnitude discrimi ....Multifunctional confocal laser scanning microscope with time resolved and two photon imaging and fluorescence correlation capabilities. We seek to establish an Australian first confocal laser scanning microscope with time resolved imaging and fluorescence correlation spectroscopy capabilities. Its advantages include ultrasensitive detection of weak fluorescent emissions against high autofluorescent background by using fluorescence lifetime signatures, with over three orders of magnitude discrimination improvement. The system will also be able to monitor binding of single molecules. These techniques will open new and exciting avenues for interdisciplinary research at the frontier between biological and physical sciences. The microscope will operate within an existing multi-user Optical Characterisation Facility supporting research of an established network of scientists in the Sydney area.Read moreRead less