Simulating viral evolution and genetic complexity. This project has direct relevance to understanding the growth of viral infections, and therefore has possible practical applications in disease research and control. Examples of these are emerging diseases in humans such as those caused by HIV-1, SARS coronavirus and Dengue virus, which cause considerable human suffering throughout the world. A major part of current research into these diseases involves attempts to model the evolutionary geneti ....Simulating viral evolution and genetic complexity. This project has direct relevance to understanding the growth of viral infections, and therefore has possible practical applications in disease research and control. Examples of these are emerging diseases in humans such as those caused by HIV-1, SARS coronavirus and Dengue virus, which cause considerable human suffering throughout the world. A major part of current research into these diseases involves attempts to model the evolutionary genetics and dynamics of virus populations in order to understand how to control epidemics, develop vaccines and design drugs. The research program is designed to provide new computational modelling tools for this purpose, which may have wider applications as well.
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Stochastic Modelling of Genetic Regulatory Networks: Subtitle - Genetic Regulation is a Noisy Business. The completion of the human genome marked the culmination of one hundred years of reductionist science in cell biology. Although further bioinformatics analysis will continue, the focus is shifting towards synthesis and understanding how the regulatory genetic components dynamically interact to form functional phenotypes. The key to this is the understanding of the roles of stochasticity in ....Stochastic Modelling of Genetic Regulatory Networks: Subtitle - Genetic Regulation is a Noisy Business. The completion of the human genome marked the culmination of one hundred years of reductionist science in cell biology. Although further bioinformatics analysis will continue, the focus is shifting towards synthesis and understanding how the regulatory genetic components dynamically interact to form functional phenotypes. The key to this is the understanding of the roles of stochasticity in cellular processes. This project will explore these roles and will develop an integrated complex systems modelling, simulation and visualisation framework. This will be used on an exemplar application for lineage commitment in haematopoiesis and for exploring and validating genetic regulatory models in general.Read moreRead less
Algorithms and computation in four-dimensional topology. This project will establish Australia as a world leader in computational topology, particularly in the all-important areas of topology in three and four dimensions. In four dimensions this work will be truly groundbreaking; until now the field has seen little development due to the complexity of the algorithms and computations required, and the applicant is in the unique position of having the necessary tools to make significant progress ....Algorithms and computation in four-dimensional topology. This project will establish Australia as a world leader in computational topology, particularly in the all-important areas of topology in three and four dimensions. In four dimensions this work will be truly groundbreaking; until now the field has seen little development due to the complexity of the algorithms and computations required, and the applicant is in the unique position of having the necessary tools to make significant progress in a feasible time frame. In three dimensions this project will strengthen the distinguished computational topology community in Melbourne, led by pioneers such as Rubinstein, Goodman, Hodgson as well as the applicant himself.Read moreRead less
Design of a Reference Methodology for Extended Enterprise Architecture. Enterprises have nowadays a very critical perception of the actual benefits of Information Technology (IT). Significant investments in IT infrastructures have been made. However, in many cases no monetary benefits could be demonstrated. Enterprises Architectures provide a way to link the business and the IT perspective. This project aims to develop an operational methodology with a solid theoretical foundation for the design ....Design of a Reference Methodology for Extended Enterprise Architecture. Enterprises have nowadays a very critical perception of the actual benefits of Information Technology (IT). Significant investments in IT infrastructures have been made. However, in many cases no monetary benefits could be demonstrated. Enterprises Architectures provide a way to link the business and the IT perspective. This project aims to develop an operational methodology with a solid theoretical foundation for the design of such Enterprise Architectures. The outcomes and the innovation of this project are an extension of the popular Zachman Framework. Integrated modelling techniques proposed within the Architecture of Integrated Information Systems will be used to populate this framework.Read moreRead less
Quantum correlations in ultra-cold Fermi gases. The field of ultra-cold Fermi gases provides a unique opportunity to develop and test theoretical methods for novel experimental environments of exceptional purity and simplicity. This improved understanding will have potential applications in many fields, ranging from the astrophysics of neutron stars to condensed matter systems such as superconductors or nanostructures. Just as importantly, the project will develop linkages with world leading the ....Quantum correlations in ultra-cold Fermi gases. The field of ultra-cold Fermi gases provides a unique opportunity to develop and test theoretical methods for novel experimental environments of exceptional purity and simplicity. This improved understanding will have potential applications in many fields, ranging from the astrophysics of neutron stars to condensed matter systems such as superconductors or nanostructures. Just as importantly, the project will develop linkages with world leading theoretical groups, which will greatly aid research student education. There are direct applications to experiments on molecule formation with ultra-cold fermions in the ARC Centre of Excellence for Quantum-Atom Optics.Read moreRead less
ARC Centre for Complex Dynamic Systems & Control. Complex dynamic systems are an inescapable feature of the world we live in. Modelling, analysing and optimizing complex behaviour is crucial for environment, process industry, biomedical, energy distribution, transportation and other applications. The Centre for Complex Dynamic Systems and Control will become an international authority in the analysis, design and optimization of complex dynamic systems, pursuing both outstanding fundamental and c ....ARC Centre for Complex Dynamic Systems & Control. Complex dynamic systems are an inescapable feature of the world we live in. Modelling, analysing and optimizing complex behaviour is crucial for environment, process industry, biomedical, energy distribution, transportation and other applications. The Centre for Complex Dynamic Systems and Control will become an international authority in the analysis, design and optimization of complex dynamic systems, pursuing both outstanding fundamental and cutting edge applied research outcomes. These outcomes will be of specific benefit to partner organizations including minerals, process, metal forming, and automotive industries.Read moreRead less
High Resolution EPR Spectroscopy - A Tool for Determining Electronic and Geometric Structure of Metalloenzymes. High resolution orientation selective pulsed EPR and END(T)OR in conjunction with computer simulation (XSophe) and computational chemistry will allow the determination of the electronic and geometric structure (distance and orientation of nuclei surrounding the metal ion(s)) of multiple redox centres in DMSOR, DorC and DMSDH to be determined. In addition pulsed ELDOR in conjunction wi ....High Resolution EPR Spectroscopy - A Tool for Determining Electronic and Geometric Structure of Metalloenzymes. High resolution orientation selective pulsed EPR and END(T)OR in conjunction with computer simulation (XSophe) and computational chemistry will allow the determination of the electronic and geometric structure (distance and orientation of nuclei surrounding the metal ion(s)) of multiple redox centres in DMSOR, DorC and DMSDH to be determined. In addition pulsed ELDOR in conjunction with molecular modelling will enable the mapping (distance and orientation) of redox centres in complex multicentered metalloproteins (DMSDH and DorC) and in protein-protein complexes (DMSOR-DorC) providing information on the pathway of electron transfer and hence the role of the pyranopterins.Read moreRead less
The Development of High Strength Aluminium and Magnesium Alloys Using "Edge-to-edge" Matching Model. The theoretical, crystallographic "edge-to-edge" matching model for diffusion-controlled phase transformations will be applied to the practical development of improved industrial aluminium and magnesium alloys with assistance of computer simulations. The model will be used to enhance the precipitation hardening response and to identify more effective grain refiners in these light alloys. The aim ....The Development of High Strength Aluminium and Magnesium Alloys Using "Edge-to-edge" Matching Model. The theoretical, crystallographic "edge-to-edge" matching model for diffusion-controlled phase transformations will be applied to the practical development of improved industrial aluminium and magnesium alloys with assistance of computer simulations. The model will be used to enhance the precipitation hardening response and to identify more effective grain refiners in these light alloys. The aims will be the development of one high strength aluminium alloy with good ductility and one high strength magnesium alloy with good creep resistance at elevated temperatures. A computer program that will help to identify the most effective grain refiners for specific light alloys will also be produced.Read moreRead less
Design and Development of a Web-based Intelligent Multimedia Mining System. Increasing amounts of digital multimedia data in the form of video is being captured and stored. However, even the most advanced storage and retrieval techniques lack the features required to be used singly, or in combination, to fulfil a wide range of user needs and rapid access to multimedia resources, even in a very large video database. The core challenges are indeed to develop efficient, smart and intelligent web-ba ....Design and Development of a Web-based Intelligent Multimedia Mining System. Increasing amounts of digital multimedia data in the form of video is being captured and stored. However, even the most advanced storage and retrieval techniques lack the features required to be used singly, or in combination, to fulfil a wide range of user needs and rapid access to multimedia resources, even in a very large video database. The core challenges are indeed to develop efficient, smart and intelligent web-based multimedia mining in Australia and elsewhere. In this project, we will explore techniques and develop algorithms for content-based multimedia retrieval and mining in multimedia databases.Read moreRead less
Computer Modelling of the Morphology and Crystallography of Diffusion-controlled Phase Transformations. An analytical, phenomenological version of the successful "edge-to edge" matching approach to the morphology and crystallography of diffusion-controlled phase transformations will be developed. This will be incorporated in a Windows based computer program that can predict the essential features of precipitation (orientation relationships, habit planes, morphology and interface structure), fro ....Computer Modelling of the Morphology and Crystallography of Diffusion-controlled Phase Transformations. An analytical, phenomenological version of the successful "edge-to edge" matching approach to the morphology and crystallography of diffusion-controlled phase transformations will be developed. This will be incorporated in a Windows based computer program that can predict the essential features of precipitation (orientation relationships, habit planes, morphology and interface structure), from readily available input data for the two phases involved. It will provide a fuller understanding of diffusion-controlled phase transformations and the computer simulation will assist in the development of improved precipitation hardening alloys. In addition, a database of crystallographic data for typical metallic materials will be established in the project.Read moreRead less