Design and Synthesis of Photoactive Peptides Based on Photosynthetic Reaction Centres. The aim of this proposal is to generate new and useful electron transfer components for biotechnological applications. We plan to design and synthesize artificial photoactive peptides inspired from natural photosynthetic reaction centres which capture the energy of light and convert it into usable forms of chemical energy. Our research will provide the ground work for the development of light-driven oxidation- ....Design and Synthesis of Photoactive Peptides Based on Photosynthetic Reaction Centres. The aim of this proposal is to generate new and useful electron transfer components for biotechnological applications. We plan to design and synthesize artificial photoactive peptides inspired from natural photosynthetic reaction centres which capture the energy of light and convert it into usable forms of chemical energy. Our research will provide the ground work for the development of light-driven oxidation-reduction catalysts that can be used in the production of clean fuels and chemical products.Read moreRead less
Manipulating the self-assembly properties of fungal hydrophobin proteins for the design of novel biological polymers. Hydrophobin-based products will be novel biocompatible and biodegradable products with applications in the fields of medical implants, biosensors, detergents, coatings and pharmaceutical and industrial emulsions. They have the potential to directly improve the lives of all Australians and to be of benefit to the Australian economy and environment. This collaborative research pro ....Manipulating the self-assembly properties of fungal hydrophobin proteins for the design of novel biological polymers. Hydrophobin-based products will be novel biocompatible and biodegradable products with applications in the fields of medical implants, biosensors, detergents, coatings and pharmaceutical and industrial emulsions. They have the potential to directly improve the lives of all Australians and to be of benefit to the Australian economy and environment. This collaborative research project will enable Australian scientists to gain from working with a multinational company and to acquire skills in the rapidly expanding fields of structural and molecular biology. The University of Sydney will own any intellectual property arising from this work and will benefit from the commercialisation of hydrophobin-based products.Read moreRead less
Molecular Interactions of Chemical Agents with Ion-Channel Proteins. With a minimal number of functional units (proteins) viruses are able to replicate. All of these proteins are possible antiviral targets. In this project we wil1 focus on a short protein called Vpu found in membranes of the HIV-1 virus and aim to analyse the interaction of potential pore blocking compounds. It is essential to know exactly where they sit and how the overall structure of Vpu is affected. For this enterprise we wi ....Molecular Interactions of Chemical Agents with Ion-Channel Proteins. With a minimal number of functional units (proteins) viruses are able to replicate. All of these proteins are possible antiviral targets. In this project we wil1 focus on a short protein called Vpu found in membranes of the HIV-1 virus and aim to analyse the interaction of potential pore blocking compounds. It is essential to know exactly where they sit and how the overall structure of Vpu is affected. For this enterprise we will use nuclear magnetic resonance (NMR) spectroscopy. This information will serve as a springboard for future investigations of virus membrane proteins.
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Biomolecular optoelectronic materials and devices. The melanins are the molecules in our skin, eyes and hair that provide colour and protection from the sun. In addition to being important bio-molecules, they have properties which make them useful for high tech applications especially in electronics and optoelectronics. Unfortunately, our current understanding of these fascinating materials is poor. In our project we aim to solve this limiting problem. We will develop new science to explain thei ....Biomolecular optoelectronic materials and devices. The melanins are the molecules in our skin, eyes and hair that provide colour and protection from the sun. In addition to being important bio-molecules, they have properties which make them useful for high tech applications especially in electronics and optoelectronics. Unfortunately, our current understanding of these fascinating materials is poor. In our project we aim to solve this limiting problem. We will develop new science to explain their behaviour, and use this knowledge to create bio-compatible hi-tech materials and devices. We anticipate significant benefits from the perspectives of basic science and utilisation of biomaterials for new green technologies.Read moreRead less
Molecular Mechanisms of Biochemical Regulation: Neutron and X-ray Scattering Studies. This project will develop and use novel neutron and x-ray scattering methods to study the molecular mechanisms by which nature regulates biochemical processes. Healthy function requires cells to tightly control and coordinate a myriad of molecular activities. My research focuses on a set of interdependent molecular networks inside cells whose behavior is controlled by the so-called 'second messengers' that tr ....Molecular Mechanisms of Biochemical Regulation: Neutron and X-ray Scattering Studies. This project will develop and use novel neutron and x-ray scattering methods to study the molecular mechanisms by which nature regulates biochemical processes. Healthy function requires cells to tightly control and coordinate a myriad of molecular activities. My research focuses on a set of interdependent molecular networks inside cells whose behavior is controlled by the so-called 'second messengers' that translate external signals into the right cellular responses. The proposed experiments will provide a unique structural framework by which we can understand how these signals are transmitted. Such knowledge is an important foundation for advances in biomedical research and biotechnology applications.Read moreRead less
Linkage Infrastructure, Equipment And Facilities - Grant ID: LE0560818
Funder
Australian Research Council
Funding Amount
$154,000.00
Summary
A Pico-Newton Scale Force Measurement Apparatus for Polymer Physics and Non-equilibrium Statistical Mechanics. We propose to build a state-of-the-art Optical Tweezers apparatus that measures small forces and torques on micron-sized objects located in 'optical traps'. Using a single laser beam and computer-generated holograms, we will create arrays of optical traps that move or 'dance', and alter the force/torque-imposing properties of each trap. This proposed research equipment will be used (1 ....A Pico-Newton Scale Force Measurement Apparatus for Polymer Physics and Non-equilibrium Statistical Mechanics. We propose to build a state-of-the-art Optical Tweezers apparatus that measures small forces and torques on micron-sized objects located in 'optical traps'. Using a single laser beam and computer-generated holograms, we will create arrays of optical traps that move or 'dance', and alter the force/torque-imposing properties of each trap. This proposed research equipment will be used (1) to study the physics of single synthetic polymer and naturally occuring biopolymer chains, (2) to quantify experimentally, and for the first time, newly predicted molecular-scale forces, and (3) to demonstrate new theories in non-equilibrium statistical mechanics that quantitatively describe the operation of nanomachines. Read moreRead less
Molecular mechanisms of two-component signal transduction in bacteria. The focus of this research is on the protein complexes that transmit signals in bacteria to elicit the desired responses to environmental stimuli. Like many dynamic processes in cells, signaling requires proteins that are flexible and hence resistant to high-resolution structural analysis using crystallography. We will make use of new research infrastructure at the Australian synchrotron and OPAL research reactor to overcom ....Molecular mechanisms of two-component signal transduction in bacteria. The focus of this research is on the protein complexes that transmit signals in bacteria to elicit the desired responses to environmental stimuli. Like many dynamic processes in cells, signaling requires proteins that are flexible and hence resistant to high-resolution structural analysis using crystallography. We will make use of new research infrastructure at the Australian synchrotron and OPAL research reactor to overcome the challenges of flexibility in these systems. The proteins we will study are not found in humans, and hence our research will provide important structural data on potential targets for the design of novel antibiotics to fight bacterial infection.Read moreRead less
Macromolecular Condensates: From Globules to Toroids and Beyond. Polymers are long-chain molecules which are vital for all living things. Examples include proteins and DNA which carries all of the information needed for life. In the cell and in the laboratory these polymers are often found in a compact folded state. Current polymer science is good at describing very flexible polymers, but fails to describe most biological polymers which have backbones that are difficult to bend. Our aim is to ....Macromolecular Condensates: From Globules to Toroids and Beyond. Polymers are long-chain molecules which are vital for all living things. Examples include proteins and DNA which carries all of the information needed for life. In the cell and in the laboratory these polymers are often found in a compact folded state. Current polymer science is good at describing very flexible polymers, but fails to describe most biological polymers which have backbones that are difficult to bend. Our aim is to describe the folded or globular state for many kinds of biological polymers and thus improve our understanding of the role of polymers in living things.Read moreRead less
Studies of the Dynamic Language of Bio-Molecular Communication and Signalling. For normal biological function, a multitude of external signals must be interpreted and responded to by cells. The responses must be carefully regulated and coordinated, or else pathological conditions will develop and, if not corrected, lead to uncontrolled proliferation or cell death. This project studies the mechanisms by which cells transmit signals. Proteins accomplish this communication by modifying the inter ....Studies of the Dynamic Language of Bio-Molecular Communication and Signalling. For normal biological function, a multitude of external signals must be interpreted and responded to by cells. The responses must be carefully regulated and coordinated, or else pathological conditions will develop and, if not corrected, lead to uncontrolled proliferation or cell death. This project studies the mechanisms by which cells transmit signals. Proteins accomplish this communication by modifying the interactions among their functional domains, effectively creating a conformational language. Knowledge of this language will impact biomedicine through its contributions to understanding the molecular pathology of diseased states, and biotechnology by enhancing our ability to use biological processes for applications.Read moreRead less
Self organization in (bio)molecular systems: Simulating the folding and aggregation of peptides, proteins and lipids. Molecular self-assembly is a basic property of living systems. Most proteins fold spontaneously and then further self-organize into functional complexes, effectively biological machines. Understanding how this occurs is a fundamental theoretical challenge with widespread application. Work will focus on developing methodology to simulate, computationally, the folding and aggrega ....Self organization in (bio)molecular systems: Simulating the folding and aggregation of peptides, proteins and lipids. Molecular self-assembly is a basic property of living systems. Most proteins fold spontaneously and then further self-organize into functional complexes, effectively biological machines. Understanding how this occurs is a fundamental theoretical challenge with widespread application. Work will focus on developing methodology to simulate, computationally, the folding and aggregation of peptides, proteins, and lipids. The aim is to accurately predict the structures of small peptides in solution and to refine crude models of larger molecules (complexes). This will facilitate the development of peptide based therapeutics and is essential in exploiting the growing volume of genetic information in biology and medicine.Read moreRead less