Genome evolution & adaptation of the multinuclear wheat stripe rust fungus. Animals and plants package their genomes into a single nucleus within each cell. In contrast, millions of fungal species accommodate multiple nuclei containing individual haploid genomes. It is currently unknown what the evolutionary implications are for this unusual genome division into multiple nuclei. Here we explore the evolutionary consequences of genome division into multiple nuclei for the first time by applying c ....Genome evolution & adaptation of the multinuclear wheat stripe rust fungus. Animals and plants package their genomes into a single nucleus within each cell. In contrast, millions of fungal species accommodate multiple nuclei containing individual haploid genomes. It is currently unknown what the evolutionary implications are for this unusual genome division into multiple nuclei. Here we explore the evolutionary consequences of genome division into multiple nuclei for the first time by applying cutting edge genome biology tools and algorithms. The economically significant study system is the devastating wheat stripe rust fungus. This pathogen costs Australian farmers over $100 million a year. New understanding is expected to lead to better disease management, reduced fungicide applications, and increased yields.Read moreRead less
Exploiting microbial metabolites to understand fungal biology. The project aims to investigate the principles of hyphal growth in fungi, by studying the mechanisms of action of a bacteria-derived compound that inhibits hyphae. Changing cell shape between yeast and hyphae is a prototype developmental switch enabling fungi to escape stressful environments, while hyphal invasion promotes fungal infections of animals and plants that endanger food security and biodiversity. By using interdisciplinary ....Exploiting microbial metabolites to understand fungal biology. The project aims to investigate the principles of hyphal growth in fungi, by studying the mechanisms of action of a bacteria-derived compound that inhibits hyphae. Changing cell shape between yeast and hyphae is a prototype developmental switch enabling fungi to escape stressful environments, while hyphal invasion promotes fungal infections of animals and plants that endanger food security and biodiversity. By using interdisciplinary approaches of microbiology and chemistry, the expected outcomes are to generate deep knowledge of an important microbial process and how it could be modulated, characterise a new bacterial compound and build research capacity at the nexus of biology and chemistry to benefit discoveries in academia and industry.Read moreRead less
Metabolic control of gene expression networks and microbiome interactions. The proposal aims to advance our understanding of how metabolism (and resulting metabolites) regulate the expression of genes, and investigate how these processes dictate the interaction of microbiota with the immune system. The project is expected to generate transformative knowledge of gene regulation, a fundamental process for cellular function, and decipher how the microbiome yeast Candida albicans interacts with immu ....Metabolic control of gene expression networks and microbiome interactions. The proposal aims to advance our understanding of how metabolism (and resulting metabolites) regulate the expression of genes, and investigate how these processes dictate the interaction of microbiota with the immune system. The project is expected to generate transformative knowledge of gene regulation, a fundamental process for cellular function, and decipher how the microbiome yeast Candida albicans interacts with immune cells and bacteria. By utilising a powerful combination of molecular and systems biology with molecular genetics and imaging, the project outcomes should foster interdisciplinary collaborations and build capacity for fundamental and applied research to benefit academia and industry, locally and globally.Read moreRead less
Unravelling cell wall polysaccharide biosynthesis in pathogenic zygomycetes. This project aims to define mechanisms that control cell wall composition and stability in Rhizopus oryzae, a zygomycete fungus responsible for life-threatening human infections. The biochemical properties and function of vital enzymes involved in a newly discovered cell wall polysaccharide biosynthetic pathway will be determined using innovative approaches at the interface of biochemistry, microbiology, cell biology an ....Unravelling cell wall polysaccharide biosynthesis in pathogenic zygomycetes. This project aims to define mechanisms that control cell wall composition and stability in Rhizopus oryzae, a zygomycete fungus responsible for life-threatening human infections. The biochemical properties and function of vital enzymes involved in a newly discovered cell wall polysaccharide biosynthetic pathway will be determined using innovative approaches at the interface of biochemistry, microbiology, cell biology and structural biology. Expected outcomes include new knowledge on the enzymes that synthesise major fucose-based carbohydrates, to guide the future development of novel strategies for antifungal therapies. The data will also be applicable to animal protection from related zygomycete pathogens.
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Are Secreted Proteins determinants of host range in ectomycorrhizal fungi? This project aims to understand the role of small secreted proteins in governing symbiotic fungal-host compatibility and determine the impact of environmental change on the role of these proteins. Using innovative approaches, this project expects to achieve these goals using comparative genomics, transcriptomic analyses and functional characterisation of these proteins within a keystone Australian ectomycorrhizal fungus. ....Are Secreted Proteins determinants of host range in ectomycorrhizal fungi? This project aims to understand the role of small secreted proteins in governing symbiotic fungal-host compatibility and determine the impact of environmental change on the role of these proteins. Using innovative approaches, this project expects to achieve these goals using comparative genomics, transcriptomic analyses and functional characterisation of these proteins within a keystone Australian ectomycorrhizal fungus. It is anticipated that outcomes of this project will add a critical component to the global effort in understanding the role of soil microbes in supporting the health of plants experiencing a variety of climactic conditions. This could provide significant benefits to informing management practices of forest ecosystems.Read moreRead less
Undermining fungal defences by targeting their functional amyloid armour. This project will determine how a protective protein coating forms on the surface of fungal spores and infectious structures. This coating is comprised of amyloid protein fibrils and is used by fungi to improve efficiency of infection and to avoid detection by the host plant or animal. We have discovered novel small molecules that prevent the fibrils from forming. This project will use these molecules to reveal the details ....Undermining fungal defences by targeting their functional amyloid armour. This project will determine how a protective protein coating forms on the surface of fungal spores and infectious structures. This coating is comprised of amyloid protein fibrils and is used by fungi to improve efficiency of infection and to avoid detection by the host plant or animal. We have discovered novel small molecules that prevent the fibrils from forming. This project will use these molecules to reveal the details of the fibril assembly mechanism and find the best way to undermine this fungal defence system. This knowledge will enable the development of potent small molecule inhibitors to treat fungal infections that blight crops and harm animals, and the production of new layered biomaterials for nanotechnology applications.Read moreRead less
Understanding mycorrhizal phenotypes using functional traits. This project aims to develop a new framework linked to tangible, measurable traits of beneficial plant-fungal partnerships that lead to empirical predictions. The project expects to deliver an understanding of how ecological strategies of plant-fungal partnerships control plant productivity and soil nutrient cycling. Expected outcomes include new methods for predicting whether beneficial partnerships can be realised and knowledge that ....Understanding mycorrhizal phenotypes using functional traits. This project aims to develop a new framework linked to tangible, measurable traits of beneficial plant-fungal partnerships that lead to empirical predictions. The project expects to deliver an understanding of how ecological strategies of plant-fungal partnerships control plant productivity and soil nutrient cycling. Expected outcomes include new methods for predicting whether beneficial partnerships can be realised and knowledge that can be transformed into recommendations for practitioners. This should lead to significant impact associated with trustworthy assessments of commercial products and of management recommendations, supporting economic and environmental benefits linked with more productive soils and improved ecosystem health.Read moreRead less
My enemy’s enemy is my friend: The genetics of major plant pathogen killers. Fungi are devastating agents of crop diseases. These plant pathogens, in turn, are often parasitized by other fungi in the field. The project will focus on such interactions between powdery mildews, important pathogens of many crops and wild plants, and their common fungal parasites (Ampelomyces spp.) that have already been utilised as
biocontrol agents in crop protection. Genetic and genomic tools will be used to deter ....My enemy’s enemy is my friend: The genetics of major plant pathogen killers. Fungi are devastating agents of crop diseases. These plant pathogens, in turn, are often parasitized by other fungi in the field. The project will focus on such interactions between powdery mildews, important pathogens of many crops and wild plants, and their common fungal parasites (Ampelomyces spp.) that have already been utilised as
biocontrol agents in crop protection. Genetic and genomic tools will be used to determine if these parasites evolved by switching host from plants to plant pathogens. The project has the potential to make a ground-breaking discovery in this field, and also establish the starting point for new innovative methods to protect a wide diversity
of crops using these fungi or specific compounds derived from them.Read moreRead less
Extracellular vesicles in the pathogenesis of fungal plant disease. Extracellular vesicles (EVs) are small membrane bound sacs that carry information between cells in essentially all organisms. EVs are also produced by bacterial and fungal pathogens and have a crucial role in infection in mammals . We propose that fungal EVs are key players in the establishment of fungal diseases in plants. We have isolated EVs from the cereal pathogen Fusarium graminearum which decreases yield and quality of gr ....Extracellular vesicles in the pathogenesis of fungal plant disease. Extracellular vesicles (EVs) are small membrane bound sacs that carry information between cells in essentially all organisms. EVs are also produced by bacterial and fungal pathogens and have a crucial role in infection in mammals . We propose that fungal EVs are key players in the establishment of fungal diseases in plants. We have isolated EVs from the cereal pathogen Fusarium graminearum which decreases yield and quality of grain in major food crops such as wheat, barley and corn. This project will focus on the cargo that EVs transport through the fungal cell wall and into the plant host and will establish the role of this cargo in disease progression. Ultimately, this knowledge will be used to design new strategies for disease control.Read moreRead less
Ion-atom collision data for fusion energy, hadron therapy and astrophysics. This project aims to combine experimental and theoretical efforts to generate accurate data required for the development and maintenance of fusion reactors, treatment planning in hadron therapy of cancerous tumours, and modelling astrophysical phenomena. Hadron therapy has been used successfully worldwide for over a decade with Australia’s first such facility, the Bragg Centre for Proton Therapy, currently under construc ....Ion-atom collision data for fusion energy, hadron therapy and astrophysics. This project aims to combine experimental and theoretical efforts to generate accurate data required for the development and maintenance of fusion reactors, treatment planning in hadron therapy of cancerous tumours, and modelling astrophysical phenomena. Hadron therapy has been used successfully worldwide for over a decade with Australia’s first such facility, the Bragg Centre for Proton Therapy, currently under construction. Fusion reactors are a source of abundant green energy. Immense progress is being made in their construction and underlying technology. Currently, there is an urgent demand for accurate data on ion-beam collisions with atoms and molecules for the aforementioned applications. This project intends to meet this demand.Read moreRead less