Creating new stochastic models to understand the evolution of gene families. This project aims to extend stochastic modelling techniques in order to develop mathematically rigorous and biologically relevant models for the evolution of gene families. The project expects to model evolutionary processes such as gene retention, duplication and loss, and the generation of new gene functions. The duplication and subsequent re-purposing of genes is thought to be a key mechanism for generating evolution ....Creating new stochastic models to understand the evolution of gene families. This project aims to extend stochastic modelling techniques in order to develop mathematically rigorous and biologically relevant models for the evolution of gene families. The project expects to model evolutionary processes such as gene retention, duplication and loss, and the generation of new gene functions. The duplication and subsequent re-purposing of genes is thought to be a key mechanism for generating evolutionary novelty. By applying these models to genome data, the project expects to be able to quantify the importance of these different evolutionary mechanisms. The project will strengthen collaborative links between researchers in stochastic modelling and molecular evolutionary biology.Read moreRead less
Mastering pyrimidine editing in RNA. Many plants and animals can alter their genetic information via RNA (ribonucleic acid) editing, a process that is often essential for the growth and development of the organism. This ability provides accurate control over gene expression and has great potential as a biotechnological tool in agriculture and medicine. RNA editing could be used to switch genes on or off in biotechnological production systems with an unprecedented degree of precision, or to corre ....Mastering pyrimidine editing in RNA. Many plants and animals can alter their genetic information via RNA (ribonucleic acid) editing, a process that is often essential for the growth and development of the organism. This ability provides accurate control over gene expression and has great potential as a biotechnological tool in agriculture and medicine. RNA editing could be used to switch genes on or off in biotechnological production systems with an unprecedented degree of precision, or to correct genetic diseases. This project aims to understand two RNA editing pathways in plants, one of which is found nowhere else and likely to involve a novel enzymatic mechanism. We will use the understanding gained to develop novel RNA processing tools usable in any living organism.Read moreRead less
Comparing properties of innate immune proteins of bats and humans. Supra-molecular protein complexes known as signalosomes drive our innate immune response by forming large signaling hubs capable of recruiting downstream effectors. This project aims to compare the properties and structure of human and bat signalosomes and discover the molecular origins of the “supra-immunity” of bats. In this context, the project expects to generate new knowledge concerning the fundamental molecular mechanisms t ....Comparing properties of innate immune proteins of bats and humans. Supra-molecular protein complexes known as signalosomes drive our innate immune response by forming large signaling hubs capable of recruiting downstream effectors. This project aims to compare the properties and structure of human and bat signalosomes and discover the molecular origins of the “supra-immunity” of bats. In this context, the project expects to generate new knowledge concerning the fundamental molecular mechanisms that regulate the signalosomes. The intended outcome is to answer the long-standing question of control of speed and amplitude of innate immune response at the molecular level. Both locally and internationally, this new approach should provide benefits across structural biology, molecular evolution and biotechnology.Read moreRead less
In depth characterisation of the gamma delta T cell immune synapse. This project aims to comprehensively characterise the activation principles of gamma delta T cells. These cells have an understudied but central role in vertebrate immunity and development. A missing piece of the puzzle is how gamma delta T cells sense stress and how this signal leads to activation. Expected outcomes include the generation of fundamental knowledge in immunology and structural biology. This proposal uses high-ski ....In depth characterisation of the gamma delta T cell immune synapse. This project aims to comprehensively characterise the activation principles of gamma delta T cells. These cells have an understudied but central role in vertebrate immunity and development. A missing piece of the puzzle is how gamma delta T cells sense stress and how this signal leads to activation. Expected outcomes include the generation of fundamental knowledge in immunology and structural biology. This proposal uses high-skilled techniques, including cryo-electron microscopy and single-molecule imaging and holds ancillary benefits to postgraduate students. Anticipated outcomes include influential publications, building a critical mass of expertise in Australia and fostering international collaborations with Australia at the epicentre.Read moreRead less
Molecular basis for susceptibility and immunity to Fusarium wilt disease. Fusarium wilt is a devastating disease of many important crop plants, including banana, cotton and tomato. There are significant gaps in our understanding of this disease that need to be addressed to enable better disease management. This project aims to identify and analyse tomato proteins targeted by Fusarium effector proteins (virulence factors), determine how corresponding tomato receptors (resistance proteins) recogni ....Molecular basis for susceptibility and immunity to Fusarium wilt disease. Fusarium wilt is a devastating disease of many important crop plants, including banana, cotton and tomato. There are significant gaps in our understanding of this disease that need to be addressed to enable better disease management. This project aims to identify and analyse tomato proteins targeted by Fusarium effector proteins (virulence factors), determine how corresponding tomato receptors (resistance proteins) recognise these effectors, and identify the signalling pathways and critical defence responses activated by these receptors. The intention is to close the gaps in our understanding and use the knowledge gained to develop new strategies for disease control by interfering with fungal pathogenicity and enhancing plant resistance.Read moreRead less
Elucidating the molecular basis of plant potyvirus resistance . Plant viruses are responsible for a large proportion of crop losses, and genetic resistance is currently the most effective means to control viral spread. This project investigates, on a molecular and structural level, host factors that plant viruses hijack during infection, and in particular, the mutations in these factors that confer resistance. We further aim to elucidate the mechanisms by which plant viruses overcome resistance ....Elucidating the molecular basis of plant potyvirus resistance . Plant viruses are responsible for a large proportion of crop losses, and genetic resistance is currently the most effective means to control viral spread. This project investigates, on a molecular and structural level, host factors that plant viruses hijack during infection, and in particular, the mutations in these factors that confer resistance. We further aim to elucidate the mechanisms by which plant viruses overcome resistance mediated by these host factors. A detailed understanding of the molecular interactions between plant viruses and their host will enable new, robust and more effective forms of resistance to be engineered. This work therefore has economic and environmental implications for agricultural productivity in Australia. Read moreRead less
Ion-atom collision data for fusion energy, hadron therapy and astrophysics. This project aims to combine experimental and theoretical efforts to generate accurate data required for the development and maintenance of fusion reactors, treatment planning in hadron therapy of cancerous tumours, and modelling astrophysical phenomena. Hadron therapy has been used successfully worldwide for over a decade with Australia’s first such facility, the Bragg Centre for Proton Therapy, currently under construc ....Ion-atom collision data for fusion energy, hadron therapy and astrophysics. This project aims to combine experimental and theoretical efforts to generate accurate data required for the development and maintenance of fusion reactors, treatment planning in hadron therapy of cancerous tumours, and modelling astrophysical phenomena. Hadron therapy has been used successfully worldwide for over a decade with Australia’s first such facility, the Bragg Centre for Proton Therapy, currently under construction. Fusion reactors are a source of abundant green energy. Immense progress is being made in their construction and underlying technology. Currently, there is an urgent demand for accurate data on ion-beam collisions with atoms and molecules for the aforementioned applications. This project intends to meet this demand.Read moreRead less
Electron-molecule collisions in fusion and astrophysical plasmas. This project will apply innovative methods developed in Australia to accurately model electron collisions with diatomic hydrides. It will generate new knowledge of the dynamics underlying fundamental chemical reactions, and bring international scientists together to study the influence of molecules in plasmas more accurately than ever before. Outcomes will include essential diagnostics for fusion reactors, methods for using the Ja ....Electron-molecule collisions in fusion and astrophysical plasmas. This project will apply innovative methods developed in Australia to accurately model electron collisions with diatomic hydrides. It will generate new knowledge of the dynamics underlying fundamental chemical reactions, and bring international scientists together to study the influence of molecules in plasmas more accurately than ever before. Outcomes will include essential diagnostics for fusion reactors, methods for using the James Webb Space Telescope to study astrophysical clouds, and strengthened ties between Australia and the global plasma physics community. The significant benefits will include accelerating the development of fusion technology as an alternative to fossil fuels, and furthering our understanding of stellar evolution.Read moreRead less
Antihydrogen formation. This project aims to advance fundamental understanding of collisions involving antimatter. The dominance of matter over antimatter in the Universe is one of the most intriguing questions of today’s science. Researchers at the European Organisation for Nuclear Research (CERN) are addressing this question by creating antihydrogen and studying its properties, including the gravitational behaviour. By trapping and cooling antihydrogen positive ions, ultra-cold antihydrogen at ....Antihydrogen formation. This project aims to advance fundamental understanding of collisions involving antimatter. The dominance of matter over antimatter in the Universe is one of the most intriguing questions of today’s science. Researchers at the European Organisation for Nuclear Research (CERN) are addressing this question by creating antihydrogen and studying its properties, including the gravitational behaviour. By trapping and cooling antihydrogen positive ions, ultra-cold antihydrogen atoms can be created and used in free fall experiments at CERN. The convergent close-coupling method and threshold theory will be used to provide the necessary theoretical guidance for the experimental antihydrogen positive ion formation via low-energy positronium-antiproton and positronium-antihydrogen collisions.Read moreRead less
Shedding Light on the Proton Radius Puzzle with Ultracold Helium. This project aims to shed light on an outstanding discrepancy in physics known as the proton radius puzzle, first seen in hydrogen but now being studied in helium. Capitalising on existing international collaboration between experiment and theory to exploit the advantages of ultracold helium, this project aims to determine the isotopic nuclear charge radius difference with unprecedented precision, using our state-of-the-art quantu ....Shedding Light on the Proton Radius Puzzle with Ultracold Helium. This project aims to shed light on an outstanding discrepancy in physics known as the proton radius puzzle, first seen in hydrogen but now being studied in helium. Capitalising on existing international collaboration between experiment and theory to exploit the advantages of ultracold helium, this project aims to determine the isotopic nuclear charge radius difference with unprecedented precision, using our state-of-the-art quantum electrodynamic theory. This will not only answer fundamental questions about helium atomic structure, but may also reveal new physics beyond the current Standard Model. The validation of atomic structure theory should provide benefits in applications including the realisation of more accurate atomic clocks.Read moreRead less