New Molecular Approaches to Comparative Phylogeography. Funds are requested to gather data to test new molecular and analytical approaches in the field of molecular phylogeography. We will generate phylogeographic hypotheses from mitochondrial and microsatellite DNA for six species and evaluate the utility of microsatellite data for the reconstruction of phylogeographic history. We will borrow powerful analytical techniques from the field of evolutionary ecology and use them in a completely nove ....New Molecular Approaches to Comparative Phylogeography. Funds are requested to gather data to test new molecular and analytical approaches in the field of molecular phylogeography. We will generate phylogeographic hypotheses from mitochondrial and microsatellite DNA for six species and evaluate the utility of microsatellite data for the reconstruction of phylogeographic history. We will borrow powerful analytical techniques from the field of evolutionary ecology and use them in a completely novel way to test hypotheses of microsatellite diversity. Our research is inter-disciplinary in that we will bridge the gap between molecular phylogenetics and molecular evolution and in so doing make a major advancement in this emerging field.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE190100544
Funder
Australian Research Council
Funding Amount
$344,682.00
Summary
The drivers of genome evolution and diversification in marsupials. This project aims to investigate the impact of the four basic forces of evolution, mutation, selection, neutral drift, and gene flow, on the genome. Genome-scale data have a signature of these forces and extracting it would greatly improve the quality of evolutionary models fit to the data, but the framework to identify the evolutionary forces has not been developed. This project will develop tests for assessing the impact of the ....The drivers of genome evolution and diversification in marsupials. This project aims to investigate the impact of the four basic forces of evolution, mutation, selection, neutral drift, and gene flow, on the genome. Genome-scale data have a signature of these forces and extracting it would greatly improve the quality of evolutionary models fit to the data, but the framework to identify the evolutionary forces has not been developed. This project will develop tests for assessing the impact of the primary evolutionary forces on the genome, and test these methods using simulations. The new framework of genomic analysis will be disseminated through an intuitive software package, and will be used to estimate with unprecedented confidence the history of diversification and genome evolution of marsupials.Read moreRead less
Conservation genomics of a critically endangered insect. This project aims to develop tools genotyping large animal genomes, focusing on the case of the Lord Howe Island stick insect, once thought to be extinct and now critically endangered. This project expects to generate molecular tools to monitor the genetic health the insect which has a large, complex and poorly understood genome. Expected outcomes include the development of a preservation and reintroduction strategy for the insect. This pr ....Conservation genomics of a critically endangered insect. This project aims to develop tools genotyping large animal genomes, focusing on the case of the Lord Howe Island stick insect, once thought to be extinct and now critically endangered. This project expects to generate molecular tools to monitor the genetic health the insect which has a large, complex and poorly understood genome. Expected outcomes include the development of a preservation and reintroduction strategy for the insect. This project will benefit ongoing conservation efforts, and is timely given the ongoing eradication of rats from Lord Howe Island where this species once lived. Read moreRead less
How are visual gene pathways lost and restored during reptile evolution? This project aims to investigate how complex traits are lost during evolution, and once lost if they can be regained. The project will use the diverse visual systems of snakes and lizards to shed light on the process of gene loss in degenerative lineages, and discover the mechanisms that compensate for gene losses in taxa with secondarily evolved visual capabilities- providing a case of evolutionary re-innovation in complex ....How are visual gene pathways lost and restored during reptile evolution? This project aims to investigate how complex traits are lost during evolution, and once lost if they can be regained. The project will use the diverse visual systems of snakes and lizards to shed light on the process of gene loss in degenerative lineages, and discover the mechanisms that compensate for gene losses in taxa with secondarily evolved visual capabilities- providing a case of evolutionary re-innovation in complex traits.Read moreRead less
Testing Theories of Historical Divergence using South Eastern Australian Reptiles. The processes that serve to create species diversity must also be preserved in order to allow evolution to continue. My study will clarify the number and distribution of water skink species in south eastern Australia, a biologically diverse, yet under studied area of Australia. I will also be looking at processes, such as dispersal, that determine patterns of species distribution over time. These lizards are also ....Testing Theories of Historical Divergence using South Eastern Australian Reptiles. The processes that serve to create species diversity must also be preserved in order to allow evolution to continue. My study will clarify the number and distribution of water skink species in south eastern Australia, a biologically diverse, yet under studied area of Australia. I will also be looking at processes, such as dispersal, that determine patterns of species distribution over time. These lizards are also found on mountain tops and may be affected by global warming. Understanding how climate change has affected these lizards in the past may help us to predict how climate changes will affect them in the future and better enable us to conserve these and other species in the future.Read moreRead less
Escalation of a coevolutionary arms race between cuckoos and their hosts: cognitive causes and evolutionary consequences. Cuckoos lay their eggs in the nests of other species, provoking an evolutionary arms race in which hosts evolve defences against parasitism and cuckoos evolve ever more cunning tricks to gain reproductive success. In principle, the degree of specialization required to defeat host defences could cause cuckoo speciation. Our previous research has revealed that the arms race bet ....Escalation of a coevolutionary arms race between cuckoos and their hosts: cognitive causes and evolutionary consequences. Cuckoos lay their eggs in the nests of other species, provoking an evolutionary arms race in which hosts evolve defences against parasitism and cuckoos evolve ever more cunning tricks to gain reproductive success. In principle, the degree of specialization required to defeat host defences could cause cuckoo speciation. Our previous research has revealed that the arms race between the Horsfield's bronze-cuckoo and its superb fairy-wren host has reached a uniquely advanced stage, hitherto undescribed, and previously thought imposssible to attain. We aim to investigate the mechanisms underlying this specialization and investigate whether it is driving speciation of the Chrysococcyx cuckoos.Read moreRead less
Evolving rates: foundations for the next generation of molecular clocks. This project aims to investigate the causes and consequences of variation in rate of DNA sequence evolution across three kingdoms of life. Dates estimated from DNA sequences have a wide range of applications, including evolutionary biology, conservation prioritisation and epidemiology. These methods rely on accurate rate estimates, but current models lack information about the biological drivers of rates of genomic change. ....Evolving rates: foundations for the next generation of molecular clocks. This project aims to investigate the causes and consequences of variation in rate of DNA sequence evolution across three kingdoms of life. Dates estimated from DNA sequences have a wide range of applications, including evolutionary biology, conservation prioritisation and epidemiology. These methods rely on accurate rate estimates, but current models lack information about the biological drivers of rates of genomic change. This project will test reliability of current methods, identify potentially misleading estimates of disease origin or conservation priorities, and develop new approaches with empirically-informed models of rate change.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE190100491
Funder
Australian Research Council
Funding Amount
$418,386.00
Summary
Linking genomic changes to the generation of biodiversity. This project aims to provide a suite of theories, methods and software to enhance our understanding on how the generation of variation at molecular level is linked to the generation of species richness at lineage level. This new approach tests various ways that molecular changes are manifested as patterns of diversification, as revealed by genomic data analysed at the lineage level in phylogenetic studies. Expected outcomes of this proje ....Linking genomic changes to the generation of biodiversity. This project aims to provide a suite of theories, methods and software to enhance our understanding on how the generation of variation at molecular level is linked to the generation of species richness at lineage level. This new approach tests various ways that molecular changes are manifested as patterns of diversification, as revealed by genomic data analysed at the lineage level in phylogenetic studies. Expected outcomes of this project add to a growing body of evolutionary theory and provide practical phylogenetic tools for future analyses. These should benefit Australia by improving our understanding on the formation of Australia’s biodiversity hotspots.Read moreRead less
Does dynamic ecological change cause rapid evolution? This project aims to increase understanding of how Australia’s native biota responds to rapid environmental changes. Abrupt environmental change has the potential to drive rapid evolution, which may facilitate species persistence in the face of novel challenges. This project will use long-term genomic data to quantify rates of evolutionary change in species living in arid environments, whose populations fluctuate markedly in response to rainf ....Does dynamic ecological change cause rapid evolution? This project aims to increase understanding of how Australia’s native biota responds to rapid environmental changes. Abrupt environmental change has the potential to drive rapid evolution, which may facilitate species persistence in the face of novel challenges. This project will use long-term genomic data to quantify rates of evolutionary change in species living in arid environments, whose populations fluctuate markedly in response to rainfall variation. By measuring the pace of genomic change in these species, and the evolutionary processes driving that change, this project will reveal species’ evolutionary responses to major environmental fluctuations.Read moreRead less