Adaptation to life in the dark: genomic analyses of blind beetles. This project aims to utilise a unique Australian model system based on multiple, independently-evolved subterranean water beetles to explore the adaptive and regressive changes in the genome that occur when surface species colonise subterranean habitats. This project focuses on the evolution of Heat Shock protein (Hsp) genes that play critical roles in adaptation to environmental stress and the process of de-canalisation, the rel ....Adaptation to life in the dark: genomic analyses of blind beetles. This project aims to utilise a unique Australian model system based on multiple, independently-evolved subterranean water beetles to explore the adaptive and regressive changes in the genome that occur when surface species colonise subterranean habitats. This project focuses on the evolution of Heat Shock protein (Hsp) genes that play critical roles in adaptation to environmental stress and the process of de-canalisation, the release of cryptic genetic variation that can allow novel morphologies to evolve in new environments. The project expects to provide further understanding of how species may potentially adapt to environmental stresses in the future, including climate change.Read moreRead less
Is regressive evolution associated with loss of gene function in subterranean animals? This project aims to investigate a fundamental biological process: the evolutionary basis for how non-functional characters, such as eyes in subterranean animals, are lost. It will use a unique model system based on eyeless water beetles, and utilise novel new genomic tools to test whether loss of characters results from gene inactivation.
Defining the Molecular Targets of Evolution. With significant advances in next-generation sequencing technologies we now have the genomes of hundreds vertebrate species, but understanding how the differences and similarities within these genomes control species diversity is largely unknown. The similarity in skull shape between the thylacine and dogs coupled with their deep ancestry, having last shared a common ancestor over 160 million years ago, provides an unprecedented opportunity to examine ....Defining the Molecular Targets of Evolution. With significant advances in next-generation sequencing technologies we now have the genomes of hundreds vertebrate species, but understanding how the differences and similarities within these genomes control species diversity is largely unknown. The similarity in skull shape between the thylacine and dogs coupled with their deep ancestry, having last shared a common ancestor over 160 million years ago, provides an unprecedented opportunity to examine how evolution works at the DNA level. This proposal will determine if animals that develop identical skull shapes, also show identical changes in their DNA. The findings will define new developmental genes and explain how selection, adaptation and evolution works at the DNA level. Read moreRead less
Adaptive evolution of coleoid (cuttlefish, octopus, squid) venoms. This project represents an opportunity for biodiscovery from the venoms of cuttlefish, octopuses and squids. The independent adaptation for venom active at the subzero Arctic and Antarctic polar waters is of particular evolutionary interest. However, their divergent, bioactive compounds are also a rich drug design resource.
Experimental co-evolution of Yeast and E. coli. This project aims to measure the rates and genetic mechanisms of adaptation for individual species within a microbial community. Expected outcomes of this interdisciplinary project include the first genomic and phenotypic dataset of a model microbial community, and novel tools for the analysis of meta-genomic datasets. This project has the potential to transform understanding of microbial adaptation.
The nature of standing genetic variation. This project aims to expand understanding of the genetic variation underlying phenotypic differences among individuals. The nature of genetic variation has broad consequences across biology, from the detection of causal genetic variants to the adaptation of natural populations. This project will take a novel experimental approach to test several long-standing assumptions about the effects of new mutations on individual traits and their joint pleiotropic ....The nature of standing genetic variation. This project aims to expand understanding of the genetic variation underlying phenotypic differences among individuals. The nature of genetic variation has broad consequences across biology, from the detection of causal genetic variants to the adaptation of natural populations. This project will take a novel experimental approach to test several long-standing assumptions about the effects of new mutations on individual traits and their joint pleiotropic effect on fitness. By expanding our understanding of how mutation, selection and drift interact, this project could provide significant improvements in our understanding of the genetic basis of phenotypes, and our ability to predict phenotypic evolution.Read moreRead less
Sexual antagonism and the consequences of sex-specific selection. Males and females arise from essentially the same genome yet are selected in vastly different ways. This exposes gene pools to alternate episodes of feminising- and masculinising-selection, thereby promoting Sexually Antagonistic (SA) evolution. Sex chromosomes are predicted to play an important role in SA evolution because sex-linkage allows for gender-specific gene expression, but data on the role of sex-linked genes are limited ....Sexual antagonism and the consequences of sex-specific selection. Males and females arise from essentially the same genome yet are selected in vastly different ways. This exposes gene pools to alternate episodes of feminising- and masculinising-selection, thereby promoting Sexually Antagonistic (SA) evolution. Sex chromosomes are predicted to play an important role in SA evolution because sex-linkage allows for gender-specific gene expression, but data on the role of sex-linked genes are limited to Drosophila, a male heterogametic (XY) model. This project will determine the consequences of SA selection in the butterfly Eurema hecabe (a female ZW heterogamete) using experimental evolution and the feminising endosymbiont Wolbachia to force male genomes through bouts of feminising selection.Read moreRead less
Understanding rapid adaptation to new environments. This project aims to improve understanding of the process of rapid adaptation. Through both in situ changes and movement of individuals, populations are increasingly encountering new environments, where they risk extinction or become invasive. The fate of populations is determined by how rapidly they adapt to their new environmental conditions. Recent theory predicts adaptation to novel environments is fastest when selection acts on environment ....Understanding rapid adaptation to new environments. This project aims to improve understanding of the process of rapid adaptation. Through both in situ changes and movement of individuals, populations are increasingly encountering new environments, where they risk extinction or become invasive. The fate of populations is determined by how rapidly they adapt to their new environmental conditions. Recent theory predicts adaptation to novel environments is fastest when selection acts on environment-specific genetic variation. This project will test this prediction using novel manipulations. Better understanding of adaptation will allow better prediction of the risks of both extinction and invasiveness of natural populations.Read moreRead less
Mutational genetic variance and the fitness optimum. Mutation and selection are ubiquitous forces in nature, but we do not understand how genetic variation produced by mutation is maintained in the presence of selection that depletes it. The recent discovery of apparent stabilising selection on traits with high levels of genetic variation provides a new approach to understanding this paradox.
Discovery Early Career Researcher Award - Grant ID: DE190100483
Funder
Australian Research Council
Funding Amount
$410,176.00
Summary
The effect of apparent stabilising selection on genetic architecture. This project aims to improve our understanding of the cause of evolutionary limits. It will test the prediction that trait combinations with high genetic variation are highly correlated with other traits, and therefore are more evolutionary limited than they appear. This project will develop and implement novel evolutionary and statistical manipulations and methods to test this prediction, and is expected to provide new method ....The effect of apparent stabilising selection on genetic architecture. This project aims to improve our understanding of the cause of evolutionary limits. It will test the prediction that trait combinations with high genetic variation are highly correlated with other traits, and therefore are more evolutionary limited than they appear. This project will develop and implement novel evolutionary and statistical manipulations and methods to test this prediction, and is expected to provide new methods for the study of selection. A better understanding of evolutionary limits will provide a significant benefit, enabling better predictions of how natural populations will evolve over short and long time-scales, and their risks of extinction.Read moreRead less