Structural reorganization of the hymenopteran mitochondrial genome. This study will be the first detailed investigation of the evolution of mt genome reorganization, and as such it will identify the processes that shape the evolution of a molecule widely used to interpret phylogeny. A description of the processes that lead to mt genome reorganization will have a substantial impact on our understanding in two areas of mt biology; (1) the discovery of new molecular phenomena that impact on the or ....Structural reorganization of the hymenopteran mitochondrial genome. This study will be the first detailed investigation of the evolution of mt genome reorganization, and as such it will identify the processes that shape the evolution of a molecule widely used to interpret phylogeny. A description of the processes that lead to mt genome reorganization will have a substantial impact on our understanding in two areas of mt biology; (1) the discovery of new molecular phenomena that impact on the organization and evolution of this genome, and (2) the interpretation of its phylogenetic content. It will establish our research group as a leader in the field of evolutionary genetics. Training of high quality students, with exposure to international researchers, will be a significant component of this program.Read moreRead less
Developing biogeographic know-how: Improving species divergence and dispersal estimations to examine geological and climatic evolutionary drivers. Anthropogenic activity over the last 150 years is now dramatically changing our global climate and ecosystems. The impact on biodiversity is already evident, and large-scale floral and faunal extinctions are predicted. This study unites a cohort of international experts in an interdisciplinary team to develop new molecular and mathematical methods to ....Developing biogeographic know-how: Improving species divergence and dispersal estimations to examine geological and climatic evolutionary drivers. Anthropogenic activity over the last 150 years is now dramatically changing our global climate and ecosystems. The impact on biodiversity is already evident, and large-scale floral and faunal extinctions are predicted. This study unites a cohort of international experts in an interdisciplinary team to develop new molecular and mathematical methods to expand our fundamental knowledge on how geological and global climate change have affected our world's species components and ecosystems in the past. This research is of environmental significance and global importance as it will improve our ability to predict how species behave under future predicted climate scenarios.Read moreRead less
How are visual gene pathways lost and restored during reptile evolution? This project aims to investigate how complex traits are lost during evolution, and once lost if they can be regained. The project will use the diverse visual systems of snakes and lizards to shed light on the process of gene loss in degenerative lineages, and discover the mechanisms that compensate for gene losses in taxa with secondarily evolved visual capabilities- providing a case of evolutionary re-innovation in complex ....How are visual gene pathways lost and restored during reptile evolution? This project aims to investigate how complex traits are lost during evolution, and once lost if they can be regained. The project will use the diverse visual systems of snakes and lizards to shed light on the process of gene loss in degenerative lineages, and discover the mechanisms that compensate for gene losses in taxa with secondarily evolved visual capabilities- providing a case of evolutionary re-innovation in complex traits.Read moreRead less
Major Evolutionary Events in Reptiles (Including Birds). Evolutionary patterns among the major groups of reptiles (including birds) will be resolved using new information from multiple (>6) nuclear genes combined with existing phenotypic and (mainly mitochondrial) genetic traits. This will simultaneously resolve several high-profile questions, such as: the origin and affinities of turtles, snakes and flightless birds; and the prevalence of phenotypic convergence generated by paedomorphosis and ....Major Evolutionary Events in Reptiles (Including Birds). Evolutionary patterns among the major groups of reptiles (including birds) will be resolved using new information from multiple (>6) nuclear genes combined with existing phenotypic and (mainly mitochondrial) genetic traits. This will simultaneously resolve several high-profile questions, such as: the origin and affinities of turtles, snakes and flightless birds; and the prevalence of phenotypic convergence generated by paedomorphosis and fossoriality. The multiple genetic and phenotypic data sets will also reveal any broad links between genetic and phenotypic evolution (e.g. rate correlations), and the differing abilities of nuclear genes, mitochondrial genes, and phenotypic traits to track (and thus reflect) deep evolutionary branchings.Read moreRead less
Genetic variation in the Cotesia flavipes complex of parasitic wasps: towards the effective biological control of stem-borer pests. This project will determine the genetic variation among world populations of the parasitic wasp Cotesia flavipes, as a prelude to the preemptive biological control of stemborer pests of sugarcane in Australia. These pests currently do not occur in Australia, but are found in crops across New Guinea and Indonesia, so that their incursion into Australia is highly lik ....Genetic variation in the Cotesia flavipes complex of parasitic wasps: towards the effective biological control of stem-borer pests. This project will determine the genetic variation among world populations of the parasitic wasp Cotesia flavipes, as a prelude to the preemptive biological control of stemborer pests of sugarcane in Australia. These pests currently do not occur in Australia, but are found in crops across New Guinea and Indonesia, so that their incursion into Australia is highly likely in the future. The results of this project will clarify the taxonomic status of C. flavipes-like species in Australia and provide the means, using molecular markers, to select host strains of this wasp suitable for the control of specific stemborer speciesRead moreRead less
Evolution of host relationships among the parasitic wasps inferred from morphology, DNA sequences and mitochondrial genome organisation. The parasitic Hymenoptera (wasps) are extensively used as biological control agents of agricultural and horticultural pests worldwide, but detailed information on their evolutionary relationships, how they have coevolved with major host groups, and the patterns of host relationships across various wasp families are lacking. This project will employ DNA sequence ....Evolution of host relationships among the parasitic wasps inferred from morphology, DNA sequences and mitochondrial genome organisation. The parasitic Hymenoptera (wasps) are extensively used as biological control agents of agricultural and horticultural pests worldwide, but detailed information on their evolutionary relationships, how they have coevolved with major host groups, and the patterns of host relationships across various wasp families are lacking. This project will employ DNA sequence data from 'new' genes, information on mitochondrial genome organisation, as well as morphology, to generate robust phylogenies for braconid and scelionid wasps that can be used to determine patterns of host utilisation and predict hosts for wasp groups where this information is currently unknown.Read moreRead less
Small is beautiful: Did gene-rich regions of mammal chromosomes evolve from microchromosomes? Most birds and reptile genomes feature many tiny microchromosomes. These are not junk, as previously thought, but contain most of the genes. Mammals lack microchromosomes, but contain gene-rich regions with similar attributes. We suggest that microchromosomes originated by genome duplication, and evolved into the gene-rich regions of mammalian chromosomes. We will test this hypothesis by comparing seque ....Small is beautiful: Did gene-rich regions of mammal chromosomes evolve from microchromosomes? Most birds and reptile genomes feature many tiny microchromosomes. These are not junk, as previously thought, but contain most of the genes. Mammals lack microchromosomes, but contain gene-rich regions with similar attributes. We suggest that microchromosomes originated by genome duplication, and evolved into the gene-rich regions of mammalian chromosomes. We will test this hypothesis by comparing sequences and genes in microchromosomes of birds, reptiles and monotremes. This will clarify the origin and evolution of the ?microgenome?, establish its suitability as a model for vertebrate genome organisation, and demonstrate whether microchromosomes are the ancestors of the gene-rich regions of mammalian chromosomes.Read moreRead less
Endosymbiotic DNA transfer. Interorganellar DNA movement is a major force in evolution. In higher organisms, the prokaryotic ancestors of mitochondria and chloroplasts donated many genes to the nucleus. Plants have unique potential in studies of the mechanisms that have driven genome evolution. We established experimentally that DNA moves from the chloroplast to the nucleus at high frequency and this provided us with a world lead in this scientifically new area. The relocated genes contribute to ....Endosymbiotic DNA transfer. Interorganellar DNA movement is a major force in evolution. In higher organisms, the prokaryotic ancestors of mitochondria and chloroplasts donated many genes to the nucleus. Plants have unique potential in studies of the mechanisms that have driven genome evolution. We established experimentally that DNA moves from the chloroplast to the nucleus at high frequency and this provided us with a world lead in this scientifically new area. The relocated genes contribute to the number and diversity of genes and gene function. Genetically manipulated (GM) crops use the chloroplast compartment to make high levels of protein, necessitating a full understanding of how transgenes behave within the cellular and the external environment.Read moreRead less
Regressive evolution of eyes in subterranean water beetles of arid-zone Australia: A comparative phylogenetic approach. Reduction or total loss of non-functional characters are common evolutionary phenomena, but little is known of the genetic basis of this regressive evolution. This project will use a phylogenetic framework to investigate the forces responsible for evolution of eyelessness in subterranean water beetles, by studying molecular genetic variation in three key eye developmental genes ....Regressive evolution of eyes in subterranean water beetles of arid-zone Australia: A comparative phylogenetic approach. Reduction or total loss of non-functional characters are common evolutionary phenomena, but little is known of the genetic basis of this regressive evolution. This project will use a phylogenetic framework to investigate the forces responsible for evolution of eyelessness in subterranean water beetles, by studying molecular genetic variation in three key eye developmental genes. The water beetles are explicitly suitable to address the questions due to their numerous independently evolved eyeless species and relatively old age of divergence from surface relatives. The research will provide a major new perspective on regressive evolution and the relationship between gene structure and function.Read moreRead less
Developing new methods to retrieve and analyse preserved genetic information. This project will position Australia at the leading edge of research into preserved DNA, and will use innovative molecular biology approaches to develop a range of new forensic, archaeological and medical applications. It will build Australian knowledge and scientific capacity by developing core expertise and training personnel in areas important for biosecurity, customs and quarantine, forensics/counter-terrorism, and ....Developing new methods to retrieve and analyse preserved genetic information. This project will position Australia at the leading edge of research into preserved DNA, and will use innovative molecular biology approaches to develop a range of new forensic, archaeological and medical applications. It will build Australian knowledge and scientific capacity by developing core expertise and training personnel in areas important for biosecurity, customs and quarantine, forensics/counter-terrorism, and studies of climate change. It will also create and foster research innovation in molecular biology with spin-offs for evolution, archaeology, medical and conservation biology research, and will also encourage involvement with the rapidly expanding field of genomics and bioinformatics.Read moreRead less