Liquefaction failures of intermediate soils. The aims of the project are to provide new data on the conditions under which liquefaction failures can occur in soil materials that are intermediate between sand and clay, and to develop models to describe this behaviour. This project addresses two significant problems: liquefaction failures which occur in silty sediments on continental slopes and produce tsunamis, and liquefaction in unsaturated ship cargos with intermediate gradings which lead to s ....Liquefaction failures of intermediate soils. The aims of the project are to provide new data on the conditions under which liquefaction failures can occur in soil materials that are intermediate between sand and clay, and to develop models to describe this behaviour. This project addresses two significant problems: liquefaction failures which occur in silty sediments on continental slopes and produce tsunamis, and liquefaction in unsaturated ship cargos with intermediate gradings which lead to ship losses. The outcomes of the project are expected to be greater understanding of the factors controlling liquefaction in silty materials, a better understanding of the risk of submarine landslides, and models which can be used to predict the conditions under which liquefaction can occur in ship cargos.Read moreRead less
Defining the antiviral effects of Wolbachia in Aedes aegypti mosquitoes. Mosquitoes that carry a bacterium called Wolbachia do not transmit human pathogenic viruses. These mosquitoes are being developed as a biocontrol tool to prevent mosquito-borne diseases. This project aims to define the molecular basis for virus inhibition by Wolbachia. Using unique biological tools including mosquitoes carrying different strains of Wolbachia that do or do not inhibit dengue virus, the project will define ho ....Defining the antiviral effects of Wolbachia in Aedes aegypti mosquitoes. Mosquitoes that carry a bacterium called Wolbachia do not transmit human pathogenic viruses. These mosquitoes are being developed as a biocontrol tool to prevent mosquito-borne diseases. This project aims to define the molecular basis for virus inhibition by Wolbachia. Using unique biological tools including mosquitoes carrying different strains of Wolbachia that do or do not inhibit dengue virus, the project will define how Wolbachia modifies its host to create an antiviral state. The findings will provide insight into how viral pathogens can be suppressed in insect hosts. This may guide future viral disease intervention strategies for diverse areas afflicted by insect-borne viral disease, including human health and agriculture.Read moreRead less
Cyclostome bryozoans: Their use as paleoceanographic, paleoclimatologic and paleoenvironmental proxies throughout the cenozoic of southern Australia. The unravelling of ocean evolution relies largely on data from fossils - geochemical proxies of ancient oceans. Southern Australia contains an inrivalled 45 million-year old record of cool-water carbonate sedimentation and thus global paleoceanography. Currently, the only proxies available in these extensive sediments are brachiopods and planktic f ....Cyclostome bryozoans: Their use as paleoceanographic, paleoclimatologic and paleoenvironmental proxies throughout the cenozoic of southern Australia. The unravelling of ocean evolution relies largely on data from fossils - geochemical proxies of ancient oceans. Southern Australia contains an inrivalled 45 million-year old record of cool-water carbonate sedimentation and thus global paleoceanography. Currently, the only proxies available in these extensive sediments are brachiopods and planktic foraminfers. However, these sediments contain prolific low-magnesium calcite bryozoans, particularly cyclostomes, that could be used instead. This research will assess such bryozoans and test their usefulness and reliability, utilising existing extensive modern marine and Tertiary samples, data bases and sections. Such potential proxies would be globally useful for limestones from the last 500My.Read moreRead less
Liquefaction of silty soils: Micromechanics, modelling and prediction. The project aims to develop a numerical approach to understand liquefaction in silty soils. Liquefaction of silty soils in submarine landslides, mine tailings dam failures and cargo liquefaction in vessels carrying iron/nickel ores can cause property loss and be fatal. This project will bridge the behaviours across the scales and deliver constitutive models that possess grain scale mechanisms for better prediction of liquefac ....Liquefaction of silty soils: Micromechanics, modelling and prediction. The project aims to develop a numerical approach to understand liquefaction in silty soils. Liquefaction of silty soils in submarine landslides, mine tailings dam failures and cargo liquefaction in vessels carrying iron/nickel ores can cause property loss and be fatal. This project will bridge the behaviours across the scales and deliver constitutive models that possess grain scale mechanisms for better prediction of liquefaction induced failure at the large scales. The expected outcomes are liquefaction criteria for silty soils with different silt contents and numerical tools to predict the onset of liquefaction and flow of liquefied soils.Read moreRead less
Molecular and genetic analysis of epigenetic components in a model plant. Australia is a major exporter of agricultural food crops thus producers must maintain their competitive advantage in order to compete on the world stage. Food crops unfortunately have large, complex genomes that are not sequenced and a generation time of months that makes research outcomes slow to achieve. This project proposes to utilise a model plant that has a small completely sequenced genome and a short generation tim ....Molecular and genetic analysis of epigenetic components in a model plant. Australia is a major exporter of agricultural food crops thus producers must maintain their competitive advantage in order to compete on the world stage. Food crops unfortunately have large, complex genomes that are not sequenced and a generation time of months that makes research outcomes slow to achieve. This project proposes to utilise a model plant that has a small completely sequenced genome and a short generation time making it ideal to study the fundamental biological process of RNA silencing. Discoveries and outcomes from this project may have the potential to benefit Australian crops, ecosystems and human health.Read moreRead less
The sponge genome project and the evolution of multicellularity: using comparative genomics and developmental biology to reconstruct the first animals. Recently the entire genome from a living fossil - a sponge from the Great Barrier Reef - was sequenced (jointly supported by the ARC and US Department of Energy). As this genome is assembled and analysed, many of the fundamental biological processes that underlie the construction and evolution of all animals, including humans, will be revealed. ....The sponge genome project and the evolution of multicellularity: using comparative genomics and developmental biology to reconstruct the first animals. Recently the entire genome from a living fossil - a sponge from the Great Barrier Reef - was sequenced (jointly supported by the ARC and US Department of Energy). As this genome is assembled and analysed, many of the fundamental biological processes that underlie the construction and evolution of all animals, including humans, will be revealed. In addition, sponge genomics will fuel innovations in medicine and biotechnology. Specifically, sponges are renowned for their capacity to synthesise bioactive compounds used in drug development, and high-grade silica used for semi-conductor construction. This project will identify the gene networks controlling these biosynthetic processes.Read moreRead less
Early animal evolution: reconstructing the last common metazoan ancestor through the analysis of developmental and structural genes in sponges. All animals, from the simplest invertebrates to humans, arose from a common ancestor. Reconstruction of this ancestor requires the comparison of metazoan developmental genetic architectures. Here we contribute to this pursuit by studying a phylogenetically and biological appropriate metazoan system - marine sponge embryos and larvae. Using high-throughp ....Early animal evolution: reconstructing the last common metazoan ancestor through the analysis of developmental and structural genes in sponges. All animals, from the simplest invertebrates to humans, arose from a common ancestor. Reconstruction of this ancestor requires the comparison of metazoan developmental genetic architectures. Here we contribute to this pursuit by studying a phylogenetically and biological appropriate metazoan system - marine sponge embryos and larvae. Using high-throughput gene profiling techniques, we will analyse the developmental genetics underlying the sponge body plan. Commonalities shared between sponges and more sophisticated animals are likely to have been present in the "genetic toolkit" of the most ancient metazoan ancestor and, as such, is the genetic foundation from which all animal biodiversity arose.Read moreRead less
Does developmental noise have an epigenetic basis? One's ultimate phenotype is the result of a combination of genotype and environment, and includes a poorly understood component termed ?developmental noise?. The molecular basis of developmental noise remains unknown, but it appears to be established in early development and to be retained for the life of the organism. We propose that the molecular basis of developmental noise is the epigenetic state of the genome. The stochastic nature of th ....Does developmental noise have an epigenetic basis? One's ultimate phenotype is the result of a combination of genotype and environment, and includes a poorly understood component termed ?developmental noise?. The molecular basis of developmental noise remains unknown, but it appears to be established in early development and to be retained for the life of the organism. We propose that the molecular basis of developmental noise is the epigenetic state of the genome. The stochastic nature of the establishment of epigenetic state, combined with its heritability during mitosis, provides all the essential components for developmental noise. If our hypothesis proves correct, our work will have a major impact on the understanding of one of the most basic concepts in genetics.Read moreRead less
Trade-offs underlying the evolution of female mating strategies. Multiple mating by females (polyandry) is a fundamental problem in behavioural ecology. The project will utilise an Australian species of stingless bee to quantify both the costs and the most probable benefits of polyandry. This will provide insight into the trade-offs underlying the evolution of mating strategies in this species and in general. Stingless bees are important members of many Australian ecosystems and have consider ....Trade-offs underlying the evolution of female mating strategies. Multiple mating by females (polyandry) is a fundamental problem in behavioural ecology. The project will utilise an Australian species of stingless bee to quantify both the costs and the most probable benefits of polyandry. This will provide insight into the trade-offs underlying the evolution of mating strategies in this species and in general. Stingless bees are important members of many Australian ecosystems and have considerable economic potential as well. The knowledge gained during the project will also substantially aid the development and management of the commercial use of stingless bees, which will have both ecological and economic benefits to Australia.Read moreRead less