Structural reorganization of the hymenopteran mitochondrial genome. This study will be the first detailed investigation of the evolution of mt genome reorganization, and as such it will identify the processes that shape the evolution of a molecule widely used to interpret phylogeny. A description of the processes that lead to mt genome reorganization will have a substantial impact on our understanding in two areas of mt biology; (1) the discovery of new molecular phenomena that impact on the or ....Structural reorganization of the hymenopteran mitochondrial genome. This study will be the first detailed investigation of the evolution of mt genome reorganization, and as such it will identify the processes that shape the evolution of a molecule widely used to interpret phylogeny. A description of the processes that lead to mt genome reorganization will have a substantial impact on our understanding in two areas of mt biology; (1) the discovery of new molecular phenomena that impact on the organization and evolution of this genome, and (2) the interpretation of its phylogenetic content. It will establish our research group as a leader in the field of evolutionary genetics. Training of high quality students, with exposure to international researchers, will be a significant component of this program.Read moreRead less
Regressive evolution of eyes in subterranean water beetles of arid-zone Australia: A comparative phylogenetic approach. Reduction or total loss of non-functional characters are common evolutionary phenomena, but little is known of the genetic basis of this regressive evolution. This project will use a phylogenetic framework to investigate the forces responsible for evolution of eyelessness in subterranean water beetles, by studying molecular genetic variation in three key eye developmental genes ....Regressive evolution of eyes in subterranean water beetles of arid-zone Australia: A comparative phylogenetic approach. Reduction or total loss of non-functional characters are common evolutionary phenomena, but little is known of the genetic basis of this regressive evolution. This project will use a phylogenetic framework to investigate the forces responsible for evolution of eyelessness in subterranean water beetles, by studying molecular genetic variation in three key eye developmental genes. The water beetles are explicitly suitable to address the questions due to their numerous independently evolved eyeless species and relatively old age of divergence from surface relatives. The research will provide a major new perspective on regressive evolution and the relationship between gene structure and function.Read moreRead less
Developing biogeographic know-how: Improving species divergence and dispersal estimations to examine geological and climatic evolutionary drivers. Anthropogenic activity over the last 150 years is now dramatically changing our global climate and ecosystems. The impact on biodiversity is already evident, and large-scale floral and faunal extinctions are predicted. This study unites a cohort of international experts in an interdisciplinary team to develop new molecular and mathematical methods to ....Developing biogeographic know-how: Improving species divergence and dispersal estimations to examine geological and climatic evolutionary drivers. Anthropogenic activity over the last 150 years is now dramatically changing our global climate and ecosystems. The impact on biodiversity is already evident, and large-scale floral and faunal extinctions are predicted. This study unites a cohort of international experts in an interdisciplinary team to develop new molecular and mathematical methods to expand our fundamental knowledge on how geological and global climate change have affected our world's species components and ecosystems in the past. This research is of environmental significance and global importance as it will improve our ability to predict how species behave under future predicted climate scenarios.Read moreRead less
Ecological dynamics of parasite infections in reptiles. Australian ecosystems are threatened by new epidemics of diseases and parasites, some local, others from overseas. Examples include the facial tumours of Tasmanian devils and the fungus that threatens many native frog species. To manage these epidemics effectively, we must understand how they spread through animal populations. With better knowledge of how diseases of wildlife spread, we can develop more effective control of those diseases t ....Ecological dynamics of parasite infections in reptiles. Australian ecosystems are threatened by new epidemics of diseases and parasites, some local, others from overseas. Examples include the facial tumours of Tasmanian devils and the fungus that threatens many native frog species. To manage these epidemics effectively, we must understand how they spread through animal populations. With better knowledge of how diseases of wildlife spread, we can develop more effective control of those diseases thereby protecting wildlife species, animal populations and, ultimately, Australian ecology. This project will help to protect our fauna from invasive diseases and contribute to sustaining the biodiversity of the country. Read moreRead less
Small is beautiful: Did gene-rich regions of mammal chromosomes evolve from microchromosomes? Most birds and reptile genomes feature many tiny microchromosomes. These are not junk, as previously thought, but contain most of the genes. Mammals lack microchromosomes, but contain gene-rich regions with similar attributes. We suggest that microchromosomes originated by genome duplication, and evolved into the gene-rich regions of mammalian chromosomes. We will test this hypothesis by comparing seque ....Small is beautiful: Did gene-rich regions of mammal chromosomes evolve from microchromosomes? Most birds and reptile genomes feature many tiny microchromosomes. These are not junk, as previously thought, but contain most of the genes. Mammals lack microchromosomes, but contain gene-rich regions with similar attributes. We suggest that microchromosomes originated by genome duplication, and evolved into the gene-rich regions of mammalian chromosomes. We will test this hypothesis by comparing sequences and genes in microchromosomes of birds, reptiles and monotremes. This will clarify the origin and evolution of the ?microgenome?, establish its suitability as a model for vertebrate genome organisation, and demonstrate whether microchromosomes are the ancestors of the gene-rich regions of mammalian chromosomes.Read moreRead less
Adaptation to life in the dark: genomic analyses of blind beetles. This project aims to utilise a unique Australian model system based on multiple, independently-evolved subterranean water beetles to explore the adaptive and regressive changes in the genome that occur when surface species colonise subterranean habitats. This project focuses on the evolution of Heat Shock protein (Hsp) genes that play critical roles in adaptation to environmental stress and the process of de-canalisation, the rel ....Adaptation to life in the dark: genomic analyses of blind beetles. This project aims to utilise a unique Australian model system based on multiple, independently-evolved subterranean water beetles to explore the adaptive and regressive changes in the genome that occur when surface species colonise subterranean habitats. This project focuses on the evolution of Heat Shock protein (Hsp) genes that play critical roles in adaptation to environmental stress and the process of de-canalisation, the release of cryptic genetic variation that can allow novel morphologies to evolve in new environments. The project expects to provide further understanding of how species may potentially adapt to environmental stresses in the future, including climate change.Read moreRead less
Is regressive evolution associated with loss of gene function in subterranean animals? This project aims to investigate a fundamental biological process: the evolutionary basis for how non-functional characters, such as eyes in subterranean animals, are lost. It will use a unique model system based on eyeless water beetles, and utilise novel new genomic tools to test whether loss of characters results from gene inactivation.
Refining the timescale of human evolution and dispersal using ancient DNA. Understanding the timescale of human evolution and migration is a key goal of genetic analysis. It provides the foundation for studying our evolutionary and demographic history, our relationships to other hominids and our impact on the natural world. This project aims to use ancient DNA data to improve estimates of our evolutionary timescale.
Implications of morphological and molecular measures of diversity in papionine primates for interpretation of hominid phylogeny. Landmark morphometrics, superquadric modeling based on 3-D surface point mapping and conventional osteometric measurements, will be used to gauge morphological differences among macaques and baboons that are known to exchange genes across taxonomic boundaries. Morphological findings will be compared with genetic data (mitochondrial and some nuclear gene measures) on th ....Implications of morphological and molecular measures of diversity in papionine primates for interpretation of hominid phylogeny. Landmark morphometrics, superquadric modeling based on 3-D surface point mapping and conventional osteometric measurements, will be used to gauge morphological differences among macaques and baboons that are known to exchange genes across taxonomic boundaries. Morphological findings will be compared with genetic data (mitochondrial and some nuclear gene measures) on the same populations, to test for congruity between genetic and morphological divergence. The same techniques for measuring morphological divergence will be used on early hominid specimens (Miocene through Plio/Pleistocene). Comparisons between extents of morphological dispersion among hominids and monkeys will be used to test taxonomic and phylogenetic hypotheses about human evolution.Read moreRead less
Major Evolutionary Events in Reptiles (Including Birds). Evolutionary patterns among the major groups of reptiles (including birds) will be resolved using new information from multiple (>6) nuclear genes combined with existing phenotypic and (mainly mitochondrial) genetic traits. This will simultaneously resolve several high-profile questions, such as: the origin and affinities of turtles, snakes and flightless birds; and the prevalence of phenotypic convergence generated by paedomorphosis and ....Major Evolutionary Events in Reptiles (Including Birds). Evolutionary patterns among the major groups of reptiles (including birds) will be resolved using new information from multiple (>6) nuclear genes combined with existing phenotypic and (mainly mitochondrial) genetic traits. This will simultaneously resolve several high-profile questions, such as: the origin and affinities of turtles, snakes and flightless birds; and the prevalence of phenotypic convergence generated by paedomorphosis and fossoriality. The multiple genetic and phenotypic data sets will also reveal any broad links between genetic and phenotypic evolution (e.g. rate correlations), and the differing abilities of nuclear genes, mitochondrial genes, and phenotypic traits to track (and thus reflect) deep evolutionary branchings.Read moreRead less