Sequencing and assembling microbial community metagenomes in real-time. This project aims to assemble metagenomes directly from environmental samples using nanopore sequencing. Short-read approaches to metagenomics cannot assemble mixed genomes from an environmental sample, so focus on describing which species and genes are present. Long-read nanopore sequencing enables the assembly of full genomes of multiple species in a sample. Assembling complete genomes in important resources such as water ....Sequencing and assembling microbial community metagenomes in real-time. This project aims to assemble metagenomes directly from environmental samples using nanopore sequencing. Short-read approaches to metagenomics cannot assemble mixed genomes from an environmental sample, so focus on describing which species and genes are present. Long-read nanopore sequencing enables the assembly of full genomes of multiple species in a sample. Assembling complete genomes in important resources such as water and soil should lead to deeper understanding of the dynamics, variation and transfer of genetic material within these resources’ microbial communities, strategies to manage microbial diversity, and improved productivity and long-term sustainability for these resources.Read moreRead less
National Macadamia Conservation Program. Macadamia is a national icon, and the only indigenous Australian plant food crop to be commercialised. However, it is vulnerable to extinction in the wild, needing conservation action. University, government, industry and community sectors will work together applying cutting edge research methodologies to produce a systematic conservation and recovery plan for Macadamia. This requires: Habitat modelling to predict past, contemporary and potential distribu ....National Macadamia Conservation Program. Macadamia is a national icon, and the only indigenous Australian plant food crop to be commercialised. However, it is vulnerable to extinction in the wild, needing conservation action. University, government, industry and community sectors will work together applying cutting edge research methodologies to produce a systematic conservation and recovery plan for Macadamia. This requires: Habitat modelling to predict past, contemporary and potential distributions for advising resource discovery and rehabilitation; Genetic variation modelling to assess quality and distinctness of native genetic resources and potential for rehabilitation by natural colonisation; and Developing a unifying statistical framework to support this work.Read moreRead less
Linkage Infrastructure, Equipment And Facilities - Grant ID: LE0452392
Funder
Australian Research Council
Funding Amount
$155,645.00
Summary
Australian Robotic Biobank Facility. The Australian Robotic Biobank Facility is envisaged as the national DNA extraction centre for generating archival-quality DNA. It will integrate with the existing Australian Plant DNA Bank to accelerate scientific discovery in biodiversity conservation and plant genetic improvement. The facility will augment Southern Cross University's extensive research collaborations with other Australian universities, institutions and agencies. It will provide the funda ....Australian Robotic Biobank Facility. The Australian Robotic Biobank Facility is envisaged as the national DNA extraction centre for generating archival-quality DNA. It will integrate with the existing Australian Plant DNA Bank to accelerate scientific discovery in biodiversity conservation and plant genetic improvement. The facility will augment Southern Cross University's extensive research collaborations with other Australian universities, institutions and agencies. It will provide the fundamental infrastructure to support research aimed at sustainable utilization and conservation management of Australia's genetic resources. The unique capacity to provide high quality archived DNA will be made possible by the precision instrumentation platform of the Australian Robotic Biobank Facility.Read moreRead less
Conservation genetics of humpback whales off Western Australia: Implications for the management of the Antarctic Group IV population. We will define the geographic structuring and gene flow of humpback whales comprising Antarctic Area Group IV, and which migrate off the coast of Western Australian. With this information we will develop guidelines for commonwealth, state, industry, and non-government organisations, for conserving and managing discrete (genetic) populations of humpback whales off ....Conservation genetics of humpback whales off Western Australia: Implications for the management of the Antarctic Group IV population. We will define the geographic structuring and gene flow of humpback whales comprising Antarctic Area Group IV, and which migrate off the coast of Western Australian. With this information we will develop guidelines for commonwealth, state, industry, and non-government organisations, for conserving and managing discrete (genetic) populations of humpback whales off Western Australia. We can then manage these cetaceans at the appropriate geographic scale, and assign conservation priority in relation to population genetic structure gained from this study.Read moreRead less
Molecular dissection of the effects of alpha-actinin-3 deficiency on normal variation in skeletal muscle function. We will study the mechanisms by which a common genetic variant influences muscle bulk, muscle strength and the metabolic efficiency of muscle in the general population. Common genetic variants that influence skeletal muscle function have major potential public health implications as they are likely to influence individuals' response to exercise and diet, and to contribute to suscept ....Molecular dissection of the effects of alpha-actinin-3 deficiency on normal variation in skeletal muscle function. We will study the mechanisms by which a common genetic variant influences muscle bulk, muscle strength and the metabolic efficiency of muscle in the general population. Common genetic variants that influence skeletal muscle function have major potential public health implications as they are likely to influence individuals' response to exercise and diet, and to contribute to susceptibility to common diseases such as obesity, diabetes, and the loss of muscle strength in the elderly. In addition, the identification of genetic factors that influence muscle bulk in vertebrates has implications for breeding programs in sheep and cattle and may provide commercial benefit to the livestock industry.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE230100257
Funder
Australian Research Council
Funding Amount
$446,857.00
Summary
Molecular biosecurity: Genomic databanks for managing new pest invasions. This project aims to develop a set of genomics-based approaches for analysing new pest invasions. By producing and analysing genomic databanks for four insect pest species, including three that have recently invaded Australia, this project expects to identify invasion origins and to track new pest incursions within Australia. The project should also provide insights into pest ecology, including movement rates and populatio ....Molecular biosecurity: Genomic databanks for managing new pest invasions. This project aims to develop a set of genomics-based approaches for analysing new pest invasions. By producing and analysing genomic databanks for four insect pest species, including three that have recently invaded Australia, this project expects to identify invasion origins and to track new pest incursions within Australia. The project should also provide insights into pest ecology, including movement rates and population change over time. This information can enable more efficient deployment of biosecurity resources and pave the way for genomics to be used pre-emptively to stop new invasions. This can help make genomics a go-to response to new pest invasions and position Australia at the forefront of genomics-based pest biosecurity.Read moreRead less
Choosing when to be sexual: clonal and sexual reproduction in a population of honey bees. Sex is costly. There is the cost of finding a mate and the genome of offspring must be shared with the mating partner. Despite these costs, sex is common in animals, so the benefits of sex must be substantial. Benefits may include the prevention of inbreeding and generating variable offspring. Exploring the trade off between sex and cloning requires a model system where individuals can choose to reproduce ....Choosing when to be sexual: clonal and sexual reproduction in a population of honey bees. Sex is costly. There is the cost of finding a mate and the genome of offspring must be shared with the mating partner. Despite these costs, sex is common in animals, so the benefits of sex must be substantial. Benefits may include the prevention of inbreeding and generating variable offspring. Exploring the trade off between sex and cloning requires a model system where individuals can choose to reproduce sexually or asexually. This project will explore a population of honey bees where a genetic mutation allows queens to clone themselves or reproduce sexually. We will reveal the unusual genetic mechanisms behind this ability and show how they are used by queens and workers to increase their reproductive success.Read moreRead less
Australian native plant species as models for understanding the regulation and roles of betalain pigment synthesis. This project will have triple bottom line benefits. Economic: new cultivars developed from understanding betalains will sell worldwide, generating returns, incomes and employment in urban, peri-urban and rural Australia. Social: Novel Ptilotus and Calandrinia cultivars will adorn parks and gardens around Australia, thereby enhancing quality of life. Environmental: Ptilotus and Cala ....Australian native plant species as models for understanding the regulation and roles of betalain pigment synthesis. This project will have triple bottom line benefits. Economic: new cultivars developed from understanding betalains will sell worldwide, generating returns, incomes and employment in urban, peri-urban and rural Australia. Social: Novel Ptilotus and Calandrinia cultivars will adorn parks and gardens around Australia, thereby enhancing quality of life. Environmental: Ptilotus and Calandrinia are inherently drought resistant. Novel ornamental cultivars will have high water use efficiency and contribute to water conservation in urban Australia in the face of drought and global warming. Moreover, understanding their synthesis and roles could yield new strategies for enhancing stress tolerance in other species, including crop plants.Read moreRead less
Discovering genes which modify human physical performance: a means of developing healthier life styles & novel athletic training programs. The aim of this multicentred study (University of Sydney, Australian National University, Australian Institute of Sport) is to find genes in the cardiac and musculoskeletal systems that are involved in modifying human physical performance. From this knowledge, it is proposed to develop novel physical training programs in our national sporting institutions ba ....Discovering genes which modify human physical performance: a means of developing healthier life styles & novel athletic training programs. The aim of this multicentred study (University of Sydney, Australian National University, Australian Institute of Sport) is to find genes in the cardiac and musculoskeletal systems that are involved in modifying human physical performance. From this knowledge, it is proposed to develop novel physical training programs in our national sporting institutions based on an individual's genetic information. In the broader community, knowledge of genes which contribute to the normal and healthy functioning of the cardiac and musculoskeletal systems will be invaluable in understanding and preventing breakdowns in these body systems.Read moreRead less