Multilevel selection and the integrity of mitochondrial DNA. This project aims to investigate the evolutionary conundrum of how and why organelles remain asexual. The widespread occurrence of sexual reproduction suggests that sex is beneficial to organisms. Yet we all carry an ancient genome that never had sex, the mitochondrial genome (mtDNA). Theory predicts that mtDNA should no longer exist, because without sex it accumulates deleterious mutations and cannot accumulate beneficial ones. Yet mt ....Multilevel selection and the integrity of mitochondrial DNA. This project aims to investigate the evolutionary conundrum of how and why organelles remain asexual. The widespread occurrence of sexual reproduction suggests that sex is beneficial to organisms. Yet we all carry an ancient genome that never had sex, the mitochondrial genome (mtDNA). Theory predicts that mtDNA should no longer exist, because without sex it accumulates deleterious mutations and cannot accumulate beneficial ones. Yet mtDNA does not suffer mutational meltdown and is shown to adapt. This project will explain how, proposing that the combination of two traits, uniparental inheritance and multiple genomes per cell, make up for the lack of sex. This project expects to provide an explanation for the evolutionary question of what keeps mitochondria healthy, important as mitochondria affect ageing and health.Read moreRead less
Gene regulation by retroelement encoded natural antisense transcripts. Genetic information underpins all life on earth and is processed to make proteins, which determine the characteristics of an organism. However, only about 2% of our whole genome is made up of genes that encode proteins; the other 98% is non-coding and its function remains poorly understood. Aims and Significance: This proposal aims to utilise cutting edge genomic technologies to generate new knowledge about how the non-coding ....Gene regulation by retroelement encoded natural antisense transcripts. Genetic information underpins all life on earth and is processed to make proteins, which determine the characteristics of an organism. However, only about 2% of our whole genome is made up of genes that encode proteins; the other 98% is non-coding and its function remains poorly understood. Aims and Significance: This proposal aims to utilise cutting edge genomic technologies to generate new knowledge about how the non-coding genome regulates the expression of protein coding genes. Expected Outcomes and Benefits: This proposal will provide novel targets and methodology for gene modulation with broad applications from biology to environmental sciences.Read moreRead less
Prediction of phenotype for multiple traits from multi-omic data. This project aims to develop better methods for predicting traits in an individual based on their genome sequence. This method will be tested in agricultural animals and plants and in humans. The prediction formula is derived from a training dataset that has information on the traits and genome sequence of a sample of individuals. The prediction formula can then be applied to predict the trait in individuals where the trait is un ....Prediction of phenotype for multiple traits from multi-omic data. This project aims to develop better methods for predicting traits in an individual based on their genome sequence. This method will be tested in agricultural animals and plants and in humans. The prediction formula is derived from a training dataset that has information on the traits and genome sequence of a sample of individuals. The prediction formula can then be applied to predict the trait in individuals where the trait is unknown. This is useful for selecting the best parents for breeding in agriculture and for predicting the future phenotype of animals, crops and people. The proposed method uses data on very many traits to identify sequence variants that have a function and to predict the traits affected by each variant.Read moreRead less
The cellular basis of sex-specific responses to virus infection. This project aims to explore how the sex of cells impacts virus infections in culture. To date, the sex of cells in culture has been overlooked as an important source of biological variability, but may be found to affect basic science through to anti-viral drug discovery. Using a model in which a virus can be adapted to grow better in cells of a single sex, this project expects to generate new knowledge about how sex differences im ....The cellular basis of sex-specific responses to virus infection. This project aims to explore how the sex of cells impacts virus infections in culture. To date, the sex of cells in culture has been overlooked as an important source of biological variability, but may be found to affect basic science through to anti-viral drug discovery. Using a model in which a virus can be adapted to grow better in cells of a single sex, this project expects to generate new knowledge about how sex differences impact virus-host interactions. This project expects to provide new insights into sex-based differences in how cells detect and respond to virus infection, and the extent to which the sex of cells impacts viruses in general.Read moreRead less
Targeting the host lipid environment to disrupt malaria transmission. This project aims to characterise host molecules (in particular lipids) that are crucial for the transition of malaria parasites from one host to another. Malaria parasites encounter different environments upon their transition from human to the mosquito host. This project expects to generate new knowledge on physiological changes that are triggered by particular differences in micronutrient abundance that allow the parasites ....Targeting the host lipid environment to disrupt malaria transmission. This project aims to characterise host molecules (in particular lipids) that are crucial for the transition of malaria parasites from one host to another. Malaria parasites encounter different environments upon their transition from human to the mosquito host. This project expects to generate new knowledge on physiological changes that are triggered by particular differences in micronutrient abundance that allow the parasites to survive in the new host. Anticipated outcomes include the identification of new intervention strategies and improved transmission model systems for vector-borne diseases. This gained knowledge could provide benefits to future biomedical applications by informing diagnostics or treatment of lipid associated diseases.Read moreRead less
Creation of a super-resolution map of the bacterial cytokinesis machinery . Cell division is a fundamental process essential for life. Yet our understanding of this process on a molecular level is limited, mostly hampered by the inability to visualize the different components of the division machinery inside these tiny cells with adequate resolution. To overcome this barrier, capitalizing on recent advancements in imaging and molecular technologies combined with innovative engineering, this proj ....Creation of a super-resolution map of the bacterial cytokinesis machinery . Cell division is a fundamental process essential for life. Yet our understanding of this process on a molecular level is limited, mostly hampered by the inability to visualize the different components of the division machinery inside these tiny cells with adequate resolution. To overcome this barrier, capitalizing on recent advancements in imaging and molecular technologies combined with innovative engineering, this project aims to create a spatial and temporal map of the division machinery inside bacterial cells at unprecedented resolution. The expected outcomes are new knowledge on the mechanism of bacterial division and technological advances in biological imaging, informing applications in a wide variety of sectors.Read moreRead less
Peril and promise: Origins and spread of integron gene cassettes. Integrons have a major role in spreading antibiotic resistance genes among pathogens. They do so by capturing gene cassettes encoding resistance, yet how these cassettes are generated, the taxa in which they originate, and the range of traits that cassettes can encode have been outstanding questions for 30 years. This project addresses these long standing questions. The project will analyze single bacterial cells to detect newly ....Peril and promise: Origins and spread of integron gene cassettes. Integrons have a major role in spreading antibiotic resistance genes among pathogens. They do so by capturing gene cassettes encoding resistance, yet how these cassettes are generated, the taxa in which they originate, and the range of traits that cassettes can encode have been outstanding questions for 30 years. This project addresses these long standing questions. The project will analyze single bacterial cells to detect newly generated cassettes and assign them to specific taxa, using an innovative method that links cassette DNA to bacterial 16S rDNA. Understanding cassette origins is the key to controlling their activity, both to harness integrons for biotechnology, and to prevent pathogens from acquiring new, dangerous traits. Read moreRead less
Messing with their minds: using deception to improve pest management. This project aims to develop new approaches to improve wildlife management by showing how deceit and misinformation can alter decision-making in pest animals. Using wild house mice as a model, it will test new theory on how animals decide whether or not to interact with wildlife control devices, like traps and baits, which is critical to all pest control efforts. The expected outcomes include new pest control tools that make s ....Messing with their minds: using deception to improve pest management. This project aims to develop new approaches to improve wildlife management by showing how deceit and misinformation can alter decision-making in pest animals. Using wild house mice as a model, it will test new theory on how animals decide whether or not to interact with wildlife control devices, like traps and baits, which is critical to all pest control efforts. The expected outcomes include new pest control tools that make strategic use of misinformation to alter decision making, to reduce a pest's ability to damage important agricultural crops such as wheat, boost the attraction of lures to traps, and improve bait uptake. These outcomes should provide significant new options for vertebrate pest control in Australia and globally.Read moreRead less
Wolbachia endosymbionts: novel strain dynamics in Australian Drosophila. This project aims to understand Wolbachia infections across Australian Drosophila flies. Wolbachia bacteria that live inside the cells of insects and other invertebrates are widely seen as a promising tool for pest and disease control. This project will assess the population distribution, host phenotypic effects, population dynamics and evolutionary context of multiple Wolbachia infections across Australian Drosophila flies ....Wolbachia endosymbionts: novel strain dynamics in Australian Drosophila. This project aims to understand Wolbachia infections across Australian Drosophila flies. Wolbachia bacteria that live inside the cells of insects and other invertebrates are widely seen as a promising tool for pest and disease control. This project will assess the population distribution, host phenotypic effects, population dynamics and evolutionary context of multiple Wolbachia infections across Australian Drosophila flies. The outcome will include new and novel strains for applied projects, new information on the fate of Wolbachia infections, and new insights into the factors that dictate the fate of Wolbachia infections across populations.Read moreRead less
Digitally-Integrated Smart Sensing of Diverse Airborne Grass Pollen Sources. Grass pollen is the main outdoor allergen source globally, triggering hayfever and asthma in up to 500 million people. With over 10,000 species, the influence of grass type, location and climate on pollen in the air is not yet known. This is a key issue since subtropical and temperate grasses differ in response to environmental factors. The project aims to use artificial intelligence on digital camera images to learn to ....Digitally-Integrated Smart Sensing of Diverse Airborne Grass Pollen Sources. Grass pollen is the main outdoor allergen source globally, triggering hayfever and asthma in up to 500 million people. With over 10,000 species, the influence of grass type, location and climate on pollen in the air is not yet known. This is a key issue since subtropical and temperate grasses differ in response to environmental factors. The project aims to use artificial intelligence on digital camera images to learn to see local grass flowers and integrate this with air sensors trained to detect grass pollen types. The expected outcomes are new capacities to track airborne grass pollen types. These outcomes can transform how pollen can be monitored to reduce the burden of allergies, and provide evidence of changing airborne pollen loads.
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