Rapid mapping of genes for complex traits. This project will develop a new resource that will allow rapid identification of genes controlling complex traits. This world-leading resource will improve knowledge of diseases like diabetes and neurological diseases.
Navigating tipping points in complex dynamical systems. This project aims to use applied mathematics to investigate the onset of tipping points in dynamical systems. Working with clinicians and practicing engineers, the project aims to contribute to the development of new treatment regimes for dynamical diseases and develop improved management strategies for resource focussed engineering industries. This should provide significant benefit to many areas, including the personalised treatment of di ....Navigating tipping points in complex dynamical systems. This project aims to use applied mathematics to investigate the onset of tipping points in dynamical systems. Working with clinicians and practicing engineers, the project aims to contribute to the development of new treatment regimes for dynamical diseases and develop improved management strategies for resource focussed engineering industries. This should provide significant benefit to many areas, including the personalised treatment of disease.Read moreRead less
Biosecurity of Australia's eucalypts at risk from exotic diseases present in the Asian region. Biosecurity of Australia's flora and fauna is a National Research Priority, however currently there are no projects in Australia dealing with the threats and risks of exotic diseases to Australian native forests and hardwood plantations and consequently our proposed project is unique. It is through years of networking and collaboration that such a project is possible within our group. The network of sc ....Biosecurity of Australia's eucalypts at risk from exotic diseases present in the Asian region. Biosecurity of Australia's flora and fauna is a National Research Priority, however currently there are no projects in Australia dealing with the threats and risks of exotic diseases to Australian native forests and hardwood plantations and consequently our proposed project is unique. It is through years of networking and collaboration that such a project is possible within our group. The network of scientists put together in this project, both in Australia and Asia, results in a team of trained scientists studying and estimating the risk of existing disease threats and being vigilant for new disease threats. Read moreRead less
Australian Heritage: constructing the first Aboriginal reference genome. This project aims to use DNA sequencing technologies to generate the first complete and accurate Aboriginal genomes, along with maps of genomic variation around Australia. It will combine a range of advanced analytical methods to integrate past and present indigenous genetic diversity from human populations around the world into a new pan-human reference genome. This project will lead to a step change in our understanding o ....Australian Heritage: constructing the first Aboriginal reference genome. This project aims to use DNA sequencing technologies to generate the first complete and accurate Aboriginal genomes, along with maps of genomic variation around Australia. It will combine a range of advanced analytical methods to integrate past and present indigenous genetic diversity from human populations around the world into a new pan-human reference genome. This project will lead to a step change in our understanding of global human genomic variants and provide a range of new targets relevant to medical biology, while significantly improving our knowledge of human genetic history and its consequences in the modern day.Read moreRead less
Population Genetics of Fungal Pathogens that Threaten the Biosecurity of Australia's Eucalypts. Many new pathogens and diseases are emerging on exotic eucalypt plantations throughout the world. These emerging diseases pose a threat to native eucalypt forests and plantations in Australia. Vigilant quarantine measures are necessary to prevent the introduction of potentially devastating pathogens into Australia. However, incursions do occur and there is a great need to study these pathogens now, ....Population Genetics of Fungal Pathogens that Threaten the Biosecurity of Australia's Eucalypts. Many new pathogens and diseases are emerging on exotic eucalypt plantations throughout the world. These emerging diseases pose a threat to native eucalypt forests and plantations in Australia. Vigilant quarantine measures are necessary to prevent the introduction of potentially devastating pathogens into Australia. However, incursions do occur and there is a great need to study these pathogens now, before they enter Australia. By studying the population genetics of pathogens, their evolutionary potential can be estimated and with that the extent of the risk they pose to native and planted eucalypts in Australia can be determined.Read moreRead less
TSuNAMi: Time Series Network Animal Modelling. Our proposal is motivated by and based upon the successful representation of time series as a network (or graph). We construct an abstract representation of a system from measurements of its changing behaviour over time. Properties of that structure (the network) then allow us to infer diagnostic information of the system. Specifically, we propose to apply this to livestock welfare during transport. By measuring the biological and environment condi ....TSuNAMi: Time Series Network Animal Modelling. Our proposal is motivated by and based upon the successful representation of time series as a network (or graph). We construct an abstract representation of a system from measurements of its changing behaviour over time. Properties of that structure (the network) then allow us to infer diagnostic information of the system. Specifically, we propose to apply this to livestock welfare during transport. By measuring the biological and environment condition of the animal we construct a network representation of that system. Geometric features of that network can then be used to infer health or duress of the subject. This proposal will develop the generic mathematical machinery to connect geometric features of the network with system behaviour. Read moreRead less
Devising sophisticated computational comparative genomic analysis strategies for animal and plant genomes. Given the significance of comparative genomic analysis, this research proposal brings together Australian scientists with a track record in comparative genomic analysis, bioinformatics, molecular biology and statistics to work on consolidating a computational framework for comparative genomic analysis and investigating transcriptome data by capitalising on international collaborations and i ....Devising sophisticated computational comparative genomic analysis strategies for animal and plant genomes. Given the significance of comparative genomic analysis, this research proposal brings together Australian scientists with a track record in comparative genomic analysis, bioinformatics, molecular biology and statistics to work on consolidating a computational framework for comparative genomic analysis and investigating transcriptome data by capitalising on international collaborations and involvement. The outcomes of this research will be of benefit to the national community through technology transfer (such as the identification of novel and functional genomic non-coding sequences), training (in bioinformatics related activities) and national coordination (of bioinformatics activities).Read moreRead less
The Epigenetics of Sex in the Dragon. Genetic codes do not directly translate to phenotypes -- environment acts through epigenetics to modify development. We use advanced molecular techniques to examine how epigenetics responds to temperature to reverse sex in our novel animal model, the dragon lizard. How does the cell sense temperature? Once the extrinsic signal is captured, how does it influence chromatin modification to release or suppress key genes in the sex differentiation pathway? Which ....The Epigenetics of Sex in the Dragon. Genetic codes do not directly translate to phenotypes -- environment acts through epigenetics to modify development. We use advanced molecular techniques to examine how epigenetics responds to temperature to reverse sex in our novel animal model, the dragon lizard. How does the cell sense temperature? Once the extrinsic signal is captured, how does it influence chromatin modification to release or suppress key genes in the sex differentiation pathway? Which sex genes are targets? Epigenetic enzymes are astonishingly conserved, providing exciting opportunities to draw from human systems to unravel novel signatures of temperature-induced sex switching in reptiles. This project will advance knowledge of developmental programming generally.Read moreRead less
Dispersal and persistence of large-seeded forest species under global environmental change. This project investigates how decline of a key seed disperser, the emu, due to global environmental change (fragmentation, fire regime change, human population growth, climate change) affects the persistence and migration potential of endemic SW Australian forest plant species. Results will inform approaches to ecosystem management and conservation
Alternative reproductive tactics and threshold evolution. This research is focussed at the highest level in the field of evolutionary biology; testing recent theory for the evolution of alternative reproductive tactics and using these species to test hypotheses about adaptation. The proposal involves collaborations with high-profile researchers from three European countries and will increase Australia's standing as a world-leader in evolutionary biology. Australian students will benefit from exp ....Alternative reproductive tactics and threshold evolution. This research is focussed at the highest level in the field of evolutionary biology; testing recent theory for the evolution of alternative reproductive tactics and using these species to test hypotheses about adaptation. The proposal involves collaborations with high-profile researchers from three European countries and will increase Australia's standing as a world-leader in evolutionary biology. Australian students will benefit from exposure to high quality international collaborators. We will also increase our understanding of the biology of the European earwig, a pest species in Australia. Reproductive tactics are exciting topics for media attention and this research will reach a wide and interested Australian and world audience.Read moreRead less