Is 'junk DNA' involved in gene editing in human cells. Exciting results suggest that non-coding RNAs (ncRNA), some of which emanate from regions in the human genome traditionally known as “junk DNA”, actually function to regulate protein-coding gene transcription. The goal of this project is to explore the role of ncRNAs on a genome-wide level to determine those proteins involved in this process and to what extent this process results in directed genome editing. Knowledge of the ncRNA pathways m ....Is 'junk DNA' involved in gene editing in human cells. Exciting results suggest that non-coding RNAs (ncRNA), some of which emanate from regions in the human genome traditionally known as “junk DNA”, actually function to regulate protein-coding gene transcription. The goal of this project is to explore the role of ncRNAs on a genome-wide level to determine those proteins involved in this process and to what extent this process results in directed genome editing. Knowledge of the ncRNA pathways may lead to a novel methodology to activate silenced genes as well as determine the role of ncRNAs in genome evolution.Read moreRead less
Ambient spatial intelligence: Spatial analysis and event detection in environmental geosensor networks. This project will design and test innovative new decentralised algorithms for responding to spatiotemporal queries in environmental monitoring networks. The research is essential for constructing larger, denser, and more reliable networks, helping to embed spatial intelligence within the environment itself (ambient spatial intelligence). The project builds on Australia's existing research exce ....Ambient spatial intelligence: Spatial analysis and event detection in environmental geosensor networks. This project will design and test innovative new decentralised algorithms for responding to spatiotemporal queries in environmental monitoring networks. The research is essential for constructing larger, denser, and more reliable networks, helping to embed spatial intelligence within the environment itself (ambient spatial intelligence). The project builds on Australia's existing research excellence in geographic information science. By making smarter use of spatial information, the project will further strengthen Australia's world-leading spatial information industry, and support sustainable and economic environmental management through important applications like conservation contracts and carbon sequestration monitoring.Read moreRead less
Long noncoding RNAs and their regulatory roles in epigenetic control of gene expression in plants. Epigenetic control of gene expression plays a critical role in development, environmental adaptation, stress response and disease resistance in plants, but its molecular basis remains largely unknown. The proposed study should contribute to the emerging field of epigenetics by discovering new regulatory noncoding RNAs involved in epigenetic mechanisms in plants. These new discoveries could potentia ....Long noncoding RNAs and their regulatory roles in epigenetic control of gene expression in plants. Epigenetic control of gene expression plays a critical role in development, environmental adaptation, stress response and disease resistance in plants, but its molecular basis remains largely unknown. The proposed study should contribute to the emerging field of epigenetics by discovering new regulatory noncoding RNAs involved in epigenetic mechanisms in plants. These new discoveries could potentially provide new opportunities and platforms for improving the performance, yield and quality of crop plants. The proposed study is therefore consistent with the national research priority goals such as breakthrough science, frontier technologies and promoting an innovation culture.Read moreRead less
Early evolution of the endomesoderm gene regulatory network. This project aims to unravel the endomesoderm gene network’s evolutionary history by identifying its conserved components’ target genes in the calcareous sponge Sycon. Little is known about the evolutionary origin of the developmental gene regulatory networks active in the development of all Eumetazoans (animals with nerves and digestive systems). Sponges are key models to study the transition from protists to eumetazoans, and gene exp ....Early evolution of the endomesoderm gene regulatory network. This project aims to unravel the endomesoderm gene network’s evolutionary history by identifying its conserved components’ target genes in the calcareous sponge Sycon. Little is known about the evolutionary origin of the developmental gene regulatory networks active in the development of all Eumetazoans (animals with nerves and digestive systems). Sponges are key models to study the transition from protists to eumetazoans, and gene expression data supports homology between sponge and eumetazoan tissues and body plans. This project could illuminate the evolutionary history of the animal body plan.Read moreRead less
Engineering synthetic genetic codes. Large, high quality libraries of new drugs are absolutely essential resources to find new medicines. However, their use is restricted to a few pharmaceutical giants. We will engineer cells to make a wide variety of drug-like polymers, providing a drug discovery resource accessible to almost any scientific laboratory. As each cell could make a different polymer, billions of different potential drugs could be produced in a single tube. This technology provides ....Engineering synthetic genetic codes. Large, high quality libraries of new drugs are absolutely essential resources to find new medicines. However, their use is restricted to a few pharmaceutical giants. We will engineer cells to make a wide variety of drug-like polymers, providing a drug discovery resource accessible to almost any scientific laboratory. As each cell could make a different polymer, billions of different potential drugs could be produced in a single tube. This technology provides an opportunity to put the future of drug discovery in the hands of the wider scientific community and new tools for Australian industries.Read moreRead less
Genetical Genomics of Mutational Variance. Mutation is the ultimate source of all genetic variation. Understanding the nature of mutation, its frequency, the distribution of effects, and the forces of selection that remove mutational load from populations is therefore a central concern of genetics. The accumulation of mutational load both in endangered species and human populations, where the natural forces of selection tend not to operate, has the potential to create serious problems in these p ....Genetical Genomics of Mutational Variance. Mutation is the ultimate source of all genetic variation. Understanding the nature of mutation, its frequency, the distribution of effects, and the forces of selection that remove mutational load from populations is therefore a central concern of genetics. The accumulation of mutational load both in endangered species and human populations, where the natural forces of selection tend not to operate, has the potential to create serious problems in these populations. The goal is to understand what types of mutations are targeted by selection at the gene expression level and why.Read moreRead less
Microbiome Regulation of the Host Mitochondrial Genome. This project aims to describe newly discovered processes by which bacteria that reside in the gut of an animal influences host mitochondria, the powerhouses of the cell. Using advanced genetic and molecular methodologies, this project aims to generate new knowledge on improving mitochondrial function as well as advance our understanding of the emerging field of microbiome research. Expected outcomes include a novel and universal technology ....Microbiome Regulation of the Host Mitochondrial Genome. This project aims to describe newly discovered processes by which bacteria that reside in the gut of an animal influences host mitochondria, the powerhouses of the cell. Using advanced genetic and molecular methodologies, this project aims to generate new knowledge on improving mitochondrial function as well as advance our understanding of the emerging field of microbiome research. Expected outcomes include a novel and universal technology platform in which to engineer small molecules and probiotics to improve mitochondrial health and enhance fitness in a range of animals. This should provide significant benefits, through both scientifically relevant outcomes and economic benefits through technological advancements.Read moreRead less
From causative genes to establishing therapies for patients with neuromuscular diseases. A major focus of this project will be pursuing multiple therapeutic approaches for a class of skeletal muscle diseases, which are most often severe and lethal within the first year of life. It will also hunt down the defective genes in human patients with other neuromuscular diseases and explore how these cause disease.
Epigenetic inheritance: how does it work? This project aims to determine the mechanisms responsible for the inheritance of acquired traits. Sometimes the environment can have effects on the phenotype of not only the exposed individual, but also their children and grandchildren. While it is clear that this can occur, what is not clear is the mechanism by which this happens and the frequency at which it happens. This project will use the model organism Caenorhabditis elegans, innovative new techni ....Epigenetic inheritance: how does it work? This project aims to determine the mechanisms responsible for the inheritance of acquired traits. Sometimes the environment can have effects on the phenotype of not only the exposed individual, but also their children and grandchildren. While it is clear that this can occur, what is not clear is the mechanism by which this happens and the frequency at which it happens. This project will use the model organism Caenorhabditis elegans, innovative new techniques for the discovery of low abundance RNA molecules, and fluorescence microscopy to analyse structures within the cell nucleus to determine what the molecular mechanism is by which this "transgenerational epigenetic inheritance" occurs. This will have an impact on evolutionary theory, as well as long-term consequences for the understanding of human health and disease, and the impact of a changing climate on agriculture.Read moreRead less
Epigenetic regulation of centromere and telomere chromatin. Epigenetics is a system that turns genes on and off without sequence alterations in the DNA. This process works by attaching chemical tags, known as epigenetic marks, to DNA. Centromeres and telomeres are chromosomal DNA domains essential for faithful chromosome segregation and genome stability. Their function and structural integrity are tightly regulated by specific epigenetic marks. This project aims to assess the functions of key ep ....Epigenetic regulation of centromere and telomere chromatin. Epigenetics is a system that turns genes on and off without sequence alterations in the DNA. This process works by attaching chemical tags, known as epigenetic marks, to DNA. Centromeres and telomeres are chromosomal DNA domains essential for faithful chromosome segregation and genome stability. Their function and structural integrity are tightly regulated by specific epigenetic marks. This project aims to assess the functions of key epigenetic factors including chromatin remodelers, histone variants and non-coding RNA in controlling centromere and telomere activity. The data should describe novel pathways that maintain the identity, transcription silencing, DNA replication fidelity and structural stability at these domains.Read moreRead less