Bayesian Statistical Inference for Implicitly defined Probability Models. Bayesian statistics has recently been used to provide solutions for a large number of hitherto intractable problems in science and technology. The success of Bayesian statistics has mainly been due to the application of so-called Markov chain Monte Carlo computational techniques. We aim to improve these algorithms, by providing fast, simple and efficient computational implementations. We will use the results to give ins ....Bayesian Statistical Inference for Implicitly defined Probability Models. Bayesian statistics has recently been used to provide solutions for a large number of hitherto intractable problems in science and technology. The success of Bayesian statistics has mainly been due to the application of so-called Markov chain Monte Carlo computational techniques. We aim to improve these algorithms, by providing fast, simple and efficient computational implementations. We will use the results to give insight by carefully quantifying and modelling uncertainty for such topics as the transmission rate of infectious diseases, the spatial distribution of plant and animal species, investigating biological theory for the genome of a virus, and changes in human fertility.Read moreRead less
Motor Unit Numbers Estimation (MUNE) using Bayesian statistical methodology for monitoring of progression of neuromuscular diseases. A means of objectively measuring the pathology of a neuromuscular disease involving motor unit loss, such as motor neuron disease, is much needed. This will be achieved by using newly developed electrophysiological techniques and developing new Bayesian statistical methodology to determine the number of motor units that supply a muscle. Our innovations will reliabl ....Motor Unit Numbers Estimation (MUNE) using Bayesian statistical methodology for monitoring of progression of neuromuscular diseases. A means of objectively measuring the pathology of a neuromuscular disease involving motor unit loss, such as motor neuron disease, is much needed. This will be achieved by using newly developed electrophysiological techniques and developing new Bayesian statistical methodology to determine the number of motor units that supply a muscle. Our innovations will reliably determine the number of motor units that supply a muscle in both normal subjects and in diseased patients with loss of motor nerves. This will enable the monitoring of disease progression. An outcome will be a software package that can be used with standard electrophysiology machines.Read moreRead less
Classification of Microarray Gene-Expression Data. The broad aim is to provide statistical methodology for the classification of microarray gene-expression data. Microarrays are part of a new biotechnology that allows the monitoring of expression levels for thousands of genes simultaneously. The explosion in microarrays has produced massive quantities of data that require new statistical techniques for analysis in order to exploit their enormous scientific potential. One of the main uses of ....Classification of Microarray Gene-Expression Data. The broad aim is to provide statistical methodology for the classification of microarray gene-expression data. Microarrays are part of a new biotechnology that allows the monitoring of expression levels for thousands of genes simultaneously. The explosion in microarrays has produced massive quantities of data that require new statistical techniques for analysis in order to exploit their enormous scientific potential. One of the main uses of the methodology to be developed is to expedite the discovery of new subclasses of diseases. Another is to provide prediction rules for the diagnosis and treatment of diseases.Read moreRead less
Applications of Bayesian methods in Genomics and Comparative Genomics. Bayesian statistics provides a unified and versatile approach to problems of data analysis, inference and hypothesis testing. This project will involve the application of Bayesian methods to four topics of commercial and scientific importance in the fields of Genomics and Comparative Genomics. The four topics are: data analysis for a novel DNA sequencing technology, investigating genomic structure using multiple change-point ....Applications of Bayesian methods in Genomics and Comparative Genomics. Bayesian statistics provides a unified and versatile approach to problems of data analysis, inference and hypothesis testing. This project will involve the application of Bayesian methods to four topics of commercial and scientific importance in the fields of Genomics and Comparative Genomics. The four topics are: data analysis for a novel DNA sequencing technology, investigating genomic structure using multiple change-point analysis, phlogenetic inference with multiple genes and detection of incongruent phylogenies. The overall goal of the project is to advance understanding of the structure, function and evolution of genomes.Read moreRead less
Nonlinear Econometric Modelling: A Complex Systems Perspective. It is becoming increasingly accepted that economic systems are both complex and adaptive. However, this introduces a range of problems in constructing, estimating and testing economic models using time series data. In this project, this problem will be addressed through the formulation and implementation of a new methodology and associated techniques. These techniques will allow a researcher to use information obtained from a set o ....Nonlinear Econometric Modelling: A Complex Systems Perspective. It is becoming increasingly accepted that economic systems are both complex and adaptive. However, this introduces a range of problems in constructing, estimating and testing economic models using time series data. In this project, this problem will be addressed through the formulation and implementation of a new methodology and associated techniques. These techniques will allow a researcher to use information obtained from a set of nonlinearity tests to determine which type of nonlinear model provides the best representation of a data generating mechanism. Selected high frequency financial and macroeconomic data (for the US and Australia) will be used in the study. This research is intended to change the direction and emphasis of econometric modelling and promises to have a fundamental impact on forecasting and policy evaluation methods.
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Statistical Methods for Discovering Ribonucleic acids (RNAs) contributing to human diseases and phenotypes. Identifying the causative genetic factors involved in quantitative phenotypes and diseases is a major goal of biology in the 21st century and beyond. A crucial step towards this goal is identifying and classifying the functional non-protein-coding Ribonucleic acids (RNAs) encoded in the human genome. This project will make major contributions to international efforts in this area by identi ....Statistical Methods for Discovering Ribonucleic acids (RNAs) contributing to human diseases and phenotypes. Identifying the causative genetic factors involved in quantitative phenotypes and diseases is a major goal of biology in the 21st century and beyond. A crucial step towards this goal is identifying and classifying the functional non-protein-coding Ribonucleic acids (RNAs) encoded in the human genome. This project will make major contributions to international efforts in this area by identifying RNA molecules that contribute to quantitative phenotypes including susceptibility to disease. As such, it will directly benefit fundamental science via the discovery and classification of new molecules. Indirectly, it will lead to breakthroughs in biology, and consequently to major medical and pharmaceutical advances in the diagnosis and treatment of genetic disease.Read moreRead less
The Stemformatics gene expression compendium: development of multivariate statistical approaches for cross platform analyses. Scientific data is gathered in many different forms, but there are significant gaps in our ability to analyse multiple datasets when generated on different pieces of equipment. This project will study three typical research questions in stem cell biology to develop new analytical approaches to help solve this major data gap.
Discovery Early Career Researcher Award - Grant ID: DE130100819
Funder
Australian Research Council
Funding Amount
$281,600.00
Summary
Measuring the improbable: optimal Monte Carlo methods for rare event simulation of maxima of dependent random variables. Some events occurring with low frequency can have dramatic consequences: natural catastrophes, economic crises, system malfunctions. Estimating their probabilities is a very difficult problem. This project will develop new simulation methods capable of delivering the most precise and efficient estimators for the probabilities of such events.
Linkage Infrastructure, Equipment And Facilities - Grant ID: LE0453501
Funder
Australian Research Council
Funding Amount
$406,097.00
Summary
A Computational Research Grid Serving Regional and Metropolitan Queensland. This project will advance scientific discovery through the development of an integrated, user-friendly computational grid. It significantly enhances Queensland's research capability and infrastructure by delivering state-of-the-art computational resources to researchers at the collaborating institutions and other Queensland and Australia researchers. New supercomputer systems will be integrated into a Queensland wide com ....A Computational Research Grid Serving Regional and Metropolitan Queensland. This project will advance scientific discovery through the development of an integrated, user-friendly computational grid. It significantly enhances Queensland's research capability and infrastructure by delivering state-of-the-art computational resources to researchers at the collaborating institutions and other Queensland and Australia researchers. New supercomputer systems will be integrated into a Queensland wide computational grid being developed by the Queensland Parallel Supercomputing Foundation - an initiative supported by the Queensland State Government. New grid technologies will be employed so that the highest level of support is provided to researchers. This ensures that the facility is used effectively, allowing high-quality research to be efficiently conducted.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE160100741
Funder
Australian Research Council
Funding Amount
$382,274.00
Summary
Tractable Bayesian algorithms for intractable Bayesian problems. This project seeks to develop computationally efficient and scalable Bayesian algorithms to estimate the parameters of complex models and ensure inferences drawn from the models can be trusted. Bayesian parameter estimation and model validation procedures are currently computationally intractable for many complex models of interest in science and technology. These include biological processes such as the efficacy of heart disease, ....Tractable Bayesian algorithms for intractable Bayesian problems. This project seeks to develop computationally efficient and scalable Bayesian algorithms to estimate the parameters of complex models and ensure inferences drawn from the models can be trusted. Bayesian parameter estimation and model validation procedures are currently computationally intractable for many complex models of interest in science and technology. These include biological processes such as the efficacy of heart disease, wound healing and skin cancer treatments. Potential outcomes of the project include new algorithms to significantly economise computations and improved understanding of the mechanisms of experimental data generation. Improved models of wound healing, skin cancer growth and heart physiology supported by these algorithms could improve population health.Read moreRead less