Complex dynamical systems: inferring form and function of interacting biological systems. Often in biology a large number of simple parts interacting according to simple rules can result in behaviour that is rich and varied. This project aims to develop the mathematics of complex systems theory to describe how such collections of simple interacting parts can form large complicated structures, and to deduce what dynamical behaviour can result.
Transcription factor – enhancer – promoter based regulatory networks. This project aims to develop new understanding on how multicellular organisms (including humans) develop, and how mutations in distant regions of the genome can affect human traits. The way the human genome is interpreted by the cellular machinery is still a mystery. We have a reference sequence and know where the majority of coding genes are, but we are far from understanding how the genome is regulated to generate the divers ....Transcription factor – enhancer – promoter based regulatory networks. This project aims to develop new understanding on how multicellular organisms (including humans) develop, and how mutations in distant regions of the genome can affect human traits. The way the human genome is interpreted by the cellular machinery is still a mystery. We have a reference sequence and know where the majority of coding genes are, but we are far from understanding how the genome is regulated to generate the diversity of cell types in our bodies. Enhancer regions interact with proximal promoters to regulate gene expression level and tissue-specificity. This project aims to develop transcriptional regulatory network models using high throughput chromatin interaction data and expression perturbation to link promoter and enhancers genome-wide.Read moreRead less
Linkage Infrastructure, Equipment And Facilities - Grant ID: LE200100122
Funder
Australian Research Council
Funding Amount
$620,000.00
Summary
Returning WA Rapid Acquisition Fluorescent Microscopy to the cutting edge. The equipment proposal aims to establish West Australia's only super-rapid-speed, high throughput confocal microscopy facility. The technology will provide researchers in biotechnology, medicine, environmental biology and agriculture with contemporary state-of-art opportunities to analyse living cells and/or large-area tissue specimens in three-dimensions with the highest possible speed and high-resolution. West Australia ....Returning WA Rapid Acquisition Fluorescent Microscopy to the cutting edge. The equipment proposal aims to establish West Australia's only super-rapid-speed, high throughput confocal microscopy facility. The technology will provide researchers in biotechnology, medicine, environmental biology and agriculture with contemporary state-of-art opportunities to analyse living cells and/or large-area tissue specimens in three-dimensions with the highest possible speed and high-resolution. West Australia hosts 1 twelve-year old historic rapid-acquisition confocal microscope that is heavily subscribed, no longer manufactured and prone to regular, prolonged, costly breakdowns. Accessing high-speed confocal systems in other states is not a viable option putting WA-based researchers at a significant disadvantage.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE130101191
Funder
Australian Research Council
Funding Amount
$375,000.00
Summary
Formation of the osteocyte network in bone matrix. The formation of new bone, which occurs throughout life for bone renewal and acutely after fractures, entraps a network of cells that can detect micro-damage and direct repair mechanisms. Mathematical and computational methods will be used to understand how this network can lead to a self-detecting and self-repairing biomaterial.
The structure in four-dimensions of a mammalian nuclear body. The project aims to develop a working model of a micron-sized molecular machine implicated in numerous aspects of gene regulation. Bodies in the mammalian cell nucleus are larger than macromolecular complexes and smaller than organelles. Recent developments in structural, molecular and cell biology are allowing us to begin to interpret their structure-function relationships. This project capitalises on a wealth of structural and funct ....The structure in four-dimensions of a mammalian nuclear body. The project aims to develop a working model of a micron-sized molecular machine implicated in numerous aspects of gene regulation. Bodies in the mammalian cell nucleus are larger than macromolecular complexes and smaller than organelles. Recent developments in structural, molecular and cell biology are allowing us to begin to interpret their structure-function relationships. This project capitalises on a wealth of structural and functional data on nuclear bodies termed paraspeckles with the aim of developing a structural model. It aims to track tens of proteins and long non-coding RNA from paraspeckles as they proceed through the cell cycle, by combining genome engineering, super-resolution microscopy, proteomics and in vitro interaction studies.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE140101096
Funder
Australian Research Council
Funding Amount
$395,220.00
Summary
Evolutionary Adaptation of the Chemical Language of Nutrient Acquisition Strategies in Higher Plants. The autotrophic and sessile nature of plants means that they need to respond to nutrient limitations in a finely tuned manner to grow and survive. Metabolites play an important role during these adaptations, either as direct modulators or as biochemical indicators of the pathways activated. Plants have evolved from relatively simple unicellular organisms that have a remarkable adaptability to re ....Evolutionary Adaptation of the Chemical Language of Nutrient Acquisition Strategies in Higher Plants. The autotrophic and sessile nature of plants means that they need to respond to nutrient limitations in a finely tuned manner to grow and survive. Metabolites play an important role during these adaptations, either as direct modulators or as biochemical indicators of the pathways activated. Plants have evolved from relatively simple unicellular organisms that have a remarkable adaptability to respond to their environment through metabolite-modulated quorum-sensing mechanisms. Preliminary evidence suggests that plants have either retained some of this ability or have evolved novel nutrient recognition strategies. This project will elucidate these pathways to gain new insights into nutrient acquisition in plants.Read moreRead less
Physiology and genetics of barley grain germination in the malting and brewing industries. An international research team will provide new scientific information on barley grain germination. This detailed basic knowledge will be immediately applied in breeding programs that are aimed at improving malting and brewing quality in a commercial context. At the same time, the industry's carbon footprint will be significantly reduced.