Female fluids in post-copulatory sexual selection. This project aims to test the causes, consequences and mechanisms of female reproductive fluids in modulating fertilisation bias in a model vertebrate species, the zebrafish. Female reproductive fluids (the fluid surrounding eggs) may moderate sperm selection by females, thus facilitating mate choice at the gamete level. This project will study interactions involving sperm and female reproductive fluid in an evolutionary framework. The intended ....Female fluids in post-copulatory sexual selection. This project aims to test the causes, consequences and mechanisms of female reproductive fluids in modulating fertilisation bias in a model vertebrate species, the zebrafish. Female reproductive fluids (the fluid surrounding eggs) may moderate sperm selection by females, thus facilitating mate choice at the gamete level. This project will study interactions involving sperm and female reproductive fluid in an evolutionary framework. The intended outcome is increased knowledge of these processes, and better understanding of how non-gamete factors affect fertility, which could benefit fields as diverse as human fertility and aquaculture.Read moreRead less
Evolutionary origin of stem cells and the emergence of animal complexity. The project aims to decipher the fundamental mechanisms governing stem cell specification and formation. All animals rely on stem cells to replenish, repair and regenerate tissues. Stem cells are also often a conduit to malignant tumours. This project seeks to uncover the rules governing stem cell formation through the study of a simple and ancient animal – the marine sponge Amphimedon queenslandica. The project plans to c ....Evolutionary origin of stem cells and the emergence of animal complexity. The project aims to decipher the fundamental mechanisms governing stem cell specification and formation. All animals rely on stem cells to replenish, repair and regenerate tissues. Stem cells are also often a conduit to malignant tumours. This project seeks to uncover the rules governing stem cell formation through the study of a simple and ancient animal – the marine sponge Amphimedon queenslandica. The project plans to combine insights from the simple, experimentally-tractable sponge stem cell system with existing knowledge of stem cell specification in humans and other animals, to reveal the essential features of stem cell formation. These insights may inform future pursuits to generate, control and use stem cells in cancer and regenerative medicines.Read moreRead less
Expanding gene-environment causality in evolutionary genetics. This project aims to investigate how environmental experiences shape phenotypes, engender variance in populations and ultimately contribute to evolution. It targets new discoveries for how environmental effects can multiply throughout ontogeny and/or propagate across generations. Although widely speculated to support new evolutionary paradigms, such knowledge lacks scrutiny according to the formal metric of quantitative genetics. Thi ....Expanding gene-environment causality in evolutionary genetics. This project aims to investigate how environmental experiences shape phenotypes, engender variance in populations and ultimately contribute to evolution. It targets new discoveries for how environmental effects can multiply throughout ontogeny and/or propagate across generations. Although widely speculated to support new evolutionary paradigms, such knowledge lacks scrutiny according to the formal metric of quantitative genetics. This project seeks to expose guppy pedigrees to unique manipulations and reconcile adaptive evolution across captive and wild populations. The outcome is expected to address knowledge gaps in the life and human sciences and potentially inform goals in primary production and conservation.Read moreRead less
Australia's oldest jawed fishes: evolution, biostratigraphy and biogeography. The research focusses on a collection of disarticulated remains of placoderms, a group of extinct armoured fishes which dominated Devonian waters (410-354 Mya). The oldest Australian placoderm macroremains so far described are of late Pragian age (400 Mya), and recognized as a highly endemic fauna. An older limestone from New South Wales has yielded new material which includes sclerotic capsules and dermal plates of ....Australia's oldest jawed fishes: evolution, biostratigraphy and biogeography. The research focusses on a collection of disarticulated remains of placoderms, a group of extinct armoured fishes which dominated Devonian waters (410-354 Mya). The oldest Australian placoderm macroremains so far described are of late Pragian age (400 Mya), and recognized as a highly endemic fauna. An older limestone from New South Wales has yielded new material which includes sclerotic capsules and dermal plates of small placoderms. Earliest Devonian (Lochkovian) acanthodians and the new placoderms, unlike the younger taxa, seem closely related to coeval faunas from the circum-Arctic region. The material will help resolve relationships and distribution of these early jawed vertebrates.Read moreRead less
Retracing the Early Evolution of Metazoa using Novel Methods and Strategies. Metazoa is one of the best-characterised groups of species in terms of its morphology, fossil record, development, and genetic make-up, but the phylogeny remains obscure because the fossil record is incomplete and because molecular phylogenetic methods have not yet been developed with the complexity of genomic data in mind. We will develop methods and strategies for the analysis of whole genomes, and use them in studies ....Retracing the Early Evolution of Metazoa using Novel Methods and Strategies. Metazoa is one of the best-characterised groups of species in terms of its morphology, fossil record, development, and genetic make-up, but the phylogeny remains obscure because the fossil record is incomplete and because molecular phylogenetic methods have not yet been developed with the complexity of genomic data in mind. We will develop methods and strategies for the analysis of whole genomes, and use them in studies of the mitochondrial genome. We will infer the animal phylogeny, and use it to chart the evolution of animal morphology and development, and the evolution of mitochondrial genetic codes, gene order, and nucleotide content.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE190100805
Funder
Australian Research Council
Funding Amount
$382,656.00
Summary
Phylogenetic methods for genome surveillance of microbial pathogens. This project aims to develop phylogenetic approaches to harness the potential evolution of bacterial and virus pathogens data and to improve early detection of infectious outbreaks. Genome surveillance programs consist in routine sequencing of particular organisms to track their evolution over time. Such programs currently exist for important bacterial and virus pathogens. This project expects to develop computational methods t ....Phylogenetic methods for genome surveillance of microbial pathogens. This project aims to develop phylogenetic approaches to harness the potential evolution of bacterial and virus pathogens data and to improve early detection of infectious outbreaks. Genome surveillance programs consist in routine sequencing of particular organisms to track their evolution over time. Such programs currently exist for important bacterial and virus pathogens. This project expects to develop computational methods to improve our understanding of pathogen outbreak emergence and infectious spread using genome data. This project will expand our knowledge base and research capability in the evolution and epidemiology of infectious agents, and aid in the prevention and control strategies of infectious disease benefiting the research priorities of food and health.Read moreRead less
Nowcasting outbreaks leveraging genomic and epidemiological data. This project aims to inform outbreak response planning by developing new models of infectious disease outbreaks. The project expects to generate new knowledge on the processes driving ongoing outbreaks including those of the novel coronavirus (COVID-19) and African swine fever by integrating the latest advances in Bayesian outbreak inference alongside unique simulation approaches. Expected outcomes should include a shift in how mo ....Nowcasting outbreaks leveraging genomic and epidemiological data. This project aims to inform outbreak response planning by developing new models of infectious disease outbreaks. The project expects to generate new knowledge on the processes driving ongoing outbreaks including those of the novel coronavirus (COVID-19) and African swine fever by integrating the latest advances in Bayesian outbreak inference alongside unique simulation approaches. Expected outcomes should include a shift in how models are developed and used to inform the response to outbreaks as they unfold. This should enable more rapid outbreak containment in Australia and overseas, leading to reduced impacts on public and animal health, and associated industries.Read moreRead less
Environmentally Induced Non-genetic Effects on Ageing and Fitness over Multi-generations and the Evolution of Life-history Trade-offs. This project will study trade-offs among growth, lifespan and fecundity, and test the following three predictions by employing a short-lived fish model and cutting-edge statistical and computational modelling. First, different dietary conditions not only affect the fitness of the organism, but also that of subsequent generations. Second, different nutritional eff ....Environmentally Induced Non-genetic Effects on Ageing and Fitness over Multi-generations and the Evolution of Life-history Trade-offs. This project will study trade-offs among growth, lifespan and fecundity, and test the following three predictions by employing a short-lived fish model and cutting-edge statistical and computational modelling. First, different dietary conditions not only affect the fitness of the organism, but also that of subsequent generations. Second, different nutritional effects and transgenerational effects on fitness-related traits are underpinned by epigenetic (or non-genetic) modifications. Third, such epigenetic modifications and their inheritance influence the evolution of life-history trade-offs. This project will link the emerging field of epigenetics with evolutionary theory, and reveal mechanisms of transgenerational epigenetic inheritance. Read moreRead less
House hunting honey bees: speed-accuracy trade-offs in collective decision-making. This project will uncover the mechanisms that underlie the trade-off between speed and accuracy in collective decision-making. We will study two species of honey bee that differ in the relative importance of speed and accuracy when deciding on a new home. Natural selection has shaped the decision-making process differently in the two species, one favouring speed, the other accuracy. We will use the natural wisdom ....House hunting honey bees: speed-accuracy trade-offs in collective decision-making. This project will uncover the mechanisms that underlie the trade-off between speed and accuracy in collective decision-making. We will study two species of honey bee that differ in the relative importance of speed and accuracy when deciding on a new home. Natural selection has shaped the decision-making process differently in the two species, one favouring speed, the other accuracy. We will use the natural wisdom evolved by the bees to design new mathematical models of collective decision-making. These can be applied to create efficient decision-making tools that will be useful for any large organization.Read moreRead less
A new universal mechanism controlling body proportions in animals. This project aims to establish that a recently-discovered mechanism, the inhibitory cascade, determines the basic proportions of appendages and body segments in a diverse range of animal groups, particularly vertebrates and arthropods. The goals of the project are to reveal the molecular mechanisms in mice and insects, and build computer simulations to show how to manipulate the control of development by the inhibitory cascade. T ....A new universal mechanism controlling body proportions in animals. This project aims to establish that a recently-discovered mechanism, the inhibitory cascade, determines the basic proportions of appendages and body segments in a diverse range of animal groups, particularly vertebrates and arthropods. The goals of the project are to reveal the molecular mechanisms in mice and insects, and build computer simulations to show how to manipulate the control of development by the inhibitory cascade. The project should benefit bioengineering by establishing control mechanisms for the manipulation and regeneration of teeth and limbs.Read moreRead less