Fertility crisis: harnessing the genomic tension behind pollen fertility in sorghum. Hybrid sorghum varieties yield more grain than inbred varieties but the production seed for farmers can be difficult. This project will identify the genes responsible for a trait that makes hybrid seed production possible and this knowledge will help raise sorghum yields in Australian and in some of the world’s poorest countries.
The link between environmental stress and disease onset in prawn aquaculture. The federal government has set a target for prawn aquaculture production to increase fourfold by 2010. A major barrier is disease: losses of 20% of production to viral diseases are not uncommon. To be internationally competitive, Australia needs to develop high health production systems. Most prawn stock carry chronic viral infections, but only exhibit disease symptoms following environmental stress. This project will ....The link between environmental stress and disease onset in prawn aquaculture. The federal government has set a target for prawn aquaculture production to increase fourfold by 2010. A major barrier is disease: losses of 20% of production to viral diseases are not uncommon. To be internationally competitive, Australia needs to develop high health production systems. Most prawn stock carry chronic viral infections, but only exhibit disease symptoms following environmental stress. This project will identify environmental stressors that activate viral disease in Penaeus monodon. Outcomes will be incorporated into on-farm managerial regimes to minimize risk of crop loss to disease. Development of biomarkers as indicators of stress related risks may be commercialized.Read moreRead less
Optimising barramundi production through early prediction of thermal tolerance and growth. Aquaculture is Australia's fastest growing primary industry and is increasingly becoming an important employer in regional Australia. Consequently, positive growth in this sector linked to productivity gains through R&D will result in improved socioeconomic prosperity of regional communities. This project will allow barramundi farmers to identify highly productive families early on in the culture process, ....Optimising barramundi production through early prediction of thermal tolerance and growth. Aquaculture is Australia's fastest growing primary industry and is increasingly becoming an important employer in regional Australia. Consequently, positive growth in this sector linked to productivity gains through R&D will result in improved socioeconomic prosperity of regional communities. This project will allow barramundi farmers to identify highly productive families early on in the culture process, thereby improving their efficiency of farming and increasing their international competitiveness in the rapidly expanding global market. The project will also establish Australia at the forefront of biotechnological research and its applications to aquaculture.Read moreRead less
The role of neurohormones in the regulation of appetite and successful sea water transfer in farmed Atlantic salmon. Cultured Atlantic salmon spend the first part of their life in freshwater and then following a physiological adaption phase called smoltification, the fish (now termed smolts) are transferred to sea cages for growout. A proportion of smolts fail to thrive after transfer, show slow or no growth and usually die some months later. This project will investigate the role that the neuro ....The role of neurohormones in the regulation of appetite and successful sea water transfer in farmed Atlantic salmon. Cultured Atlantic salmon spend the first part of their life in freshwater and then following a physiological adaption phase called smoltification, the fish (now termed smolts) are transferred to sea cages for growout. A proportion of smolts fail to thrive after transfer, show slow or no growth and usually die some months later. This project will investigate the role that the neurohomones that control both appetite and physiological stress in fish have in stimulating the resumption of feeding after sea water transfer.The basic knowledge generated will be used directly in development of strategies for minimising smolt failure in Atlantic salmon aquaculture.Read moreRead less
Aquaculture of the tropical abalone: identifying and selecting for factors promoting high settlement, survival and growth. There is a growing demand worldwide for the 'cocktail'-sized tropical abalone Haliotis asinina. We have developed a full set of hatchery and grow-out procedures that Queensland Sea Scallops Pty Ltd will test on a commercial scale. At QSS, we will propagate and growout Haliotis asinina to determine the factors controlling settlement, survival, growth and health. We will do ....Aquaculture of the tropical abalone: identifying and selecting for factors promoting high settlement, survival and growth. There is a growing demand worldwide for the 'cocktail'-sized tropical abalone Haliotis asinina. We have developed a full set of hatchery and grow-out procedures that Queensland Sea Scallops Pty Ltd will test on a commercial scale. At QSS, we will propagate and growout Haliotis asinina to determine the factors controlling settlement, survival, growth and health. We will do this by combining breeding experiments with microarray gene profiling and other advanced gene expression studies. This knowledge will enhance the development of this new aquaculture industry in tropical Australia and our understanding of abalone aquaculture in general.Read moreRead less
Gene Expression Profiling and de novo Transcriptome Sequencing using Geneballs. The purpose of the project is to demonstrate that bead-based technology can be used in applications that currently require DNA hybridisation in order to overcome existing deficiencies in microarray technology. By providing the capability to quickly and efficiently produce, screen and utilize biomolecule libraries of nearly unlimited size, this technology provides the key to unlock the power of genomics and proteomics ....Gene Expression Profiling and de novo Transcriptome Sequencing using Geneballs. The purpose of the project is to demonstrate that bead-based technology can be used in applications that currently require DNA hybridisation in order to overcome existing deficiencies in microarray technology. By providing the capability to quickly and efficiently produce, screen and utilize biomolecule libraries of nearly unlimited size, this technology provides the key to unlock the power of genomics and proteomics for use in real world applications. The project has two aspects. First, relatively small directed cDNA-bead libraries will be compared to known low-density cDNA microarrays to validate the technique for utility in gene expression profiling. Secondly, large libraries containing short oligonucleotide sequences will be used for de novo sequencing of a complete transcriptome. Proof-of-concept in either case will pave the way for many genomic applications and catapult the technology to 'blockbuster' status.Read moreRead less
Bayesian methodology for analysis of genome data with focus on the livestock industry. The aim is to develop statistical methods for the design and analysis of genome data with focus on the special needs of the livestock industry. This will significantly contribute to profitability, quality, genetic improvement and genetic knowledge in a key national industry, improve Australia's international and national profile in the key research area of bioinformatics, and encourage optimisation of current ....Bayesian methodology for analysis of genome data with focus on the livestock industry. The aim is to develop statistical methods for the design and analysis of genome data with focus on the special needs of the livestock industry. This will significantly contribute to profitability, quality, genetic improvement and genetic knowledge in a key national industry, improve Australia's international and national profile in the key research area of bioinformatics, and encourage optimisation of current information. Outcomes include a toolkit of applicable statistical methods, statistically valid algorithms, marketable methods for gene discovery, technology transfer, training and publications.Read moreRead less
Enabling Molecular Plant Breeding for Drought Adaptation Using Genome-to-Phenome Modelling Technologies. Effective molecular plant breeding for improved water productivity of sorghum would generate significant economic and social benefits for rural communities in NE Australia. There is a significant opportunity to expand the sorghum industry in the region. Despite the global financial crisis, global demand for meat continues to increase, generating strong demand from intensive livestock industri ....Enabling Molecular Plant Breeding for Drought Adaptation Using Genome-to-Phenome Modelling Technologies. Effective molecular plant breeding for improved water productivity of sorghum would generate significant economic and social benefits for rural communities in NE Australia. There is a significant opportunity to expand the sorghum industry in the region. Despite the global financial crisis, global demand for meat continues to increase, generating strong demand from intensive livestock industries for feed grain. Price is projected to return to high levels given continuing use of major feed grains for biofuel. A 10% increase in sorghum production would add net value of $48M annually, much via employment. The scientific content of this project positions Australia at the leading edge globally in this emerging research field. Read moreRead less
From genotype to phenotype: Molecular photofitting for criminal investigations. DNA found at crime scenes has the potential to provide a physical description of the donor in the same way as an eyewitness statement can be used to make a facial reconstruction. This project will investigate those physical traits which can be derived from the analysis of DNA present in samples collected in relation to criminal activities.
NextGen Sorghum: Genomic approaches to novel renewable bioproducts. Next Gen Sorghums will have enhanced nutritional and processing qualities for humans and animals, and be ideal feedstocks for the bio-economy for the delivery of novel products. Our approaches in reverse genetics to identify gene networks which control sorghum seed development, cell size, cell wall thickness and the way in which starch and protein are packaged within the grain will generate knowledge to underpin the future utili ....NextGen Sorghum: Genomic approaches to novel renewable bioproducts. Next Gen Sorghums will have enhanced nutritional and processing qualities for humans and animals, and be ideal feedstocks for the bio-economy for the delivery of novel products. Our approaches in reverse genetics to identify gene networks which control sorghum seed development, cell size, cell wall thickness and the way in which starch and protein are packaged within the grain will generate knowledge to underpin the future utilisation of this important grain. This will help to drive the future of Australian cereals industries, with health benefits to consumers, the enhanced delivery of specialised feedstocks for novel and renewable bio-products, and financial benefits to farmers.Read moreRead less