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Unlocking bacterial shapeshifting and its role in antimicrobial resistance. This project aims to combine advanced imaging with innovative microfluidics to identify how microbial shapeshifting can be exploited as a target for new antimicrobials. Infections that are hard to treat due to increasing antimicrobial resistance not only have an enormous, global impact on mammalian health, including livestock and humans, but also carry a growing economic burden. Advanced understanding of microbial life c ....Unlocking bacterial shapeshifting and its role in antimicrobial resistance. This project aims to combine advanced imaging with innovative microfluidics to identify how microbial shapeshifting can be exploited as a target for new antimicrobials. Infections that are hard to treat due to increasing antimicrobial resistance not only have an enormous, global impact on mammalian health, including livestock and humans, but also carry a growing economic burden. Advanced understanding of microbial life can propel urgently needed progress this area. Specifically, the project outcomes are expected to aid the development of next generation antibiotics. The new fundamental knowledge should also benefit translational prevention, identification and management efforts of a rising national and global health threat.Read moreRead less
How microbes build their environments through evolutionary feedback. The fitness landscape, a key evolutionary concept, relates genes or traits to reproductive fitness. However, this has been challenged by organisms that distort the landscape by changing their environments. This project aims to develop a new mathematical model that restores the landscape concept by extending it to accommodate niche construction. This framework will be applied to microorganisms that alter their environments, for ....How microbes build their environments through evolutionary feedback. The fitness landscape, a key evolutionary concept, relates genes or traits to reproductive fitness. However, this has been challenged by organisms that distort the landscape by changing their environments. This project aims to develop a new mathematical model that restores the landscape concept by extending it to accommodate niche construction. This framework will be applied to microorganisms that alter their environments, for example, by provoking and subverting the host immune system, and by inducing behavioural change in hosts. These processes alter how natural selection operates on microbes and thus lead to important evolutionary feedback. The model will be used to examine antibiotic resistance, pathogen virulence and how microbiomes develop.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE140100963
Funder
Australian Research Council
Funding Amount
$395,220.00
Summary
Biofilms and quorum sensing in pneumococcal biology. Bacteria survive in their environmental niches by development of complex multicellular communities (biofilms), not by operating as individuals. Communication between bacteria is critical for biofilm formation, and is linked to their capacity to exchange DNA within and between species (competence). This is achieved by secretion and detection of small chemical signalling molecules (quorum sensing). Two such systems operate in the pneumococcus, a ....Biofilms and quorum sensing in pneumococcal biology. Bacteria survive in their environmental niches by development of complex multicellular communities (biofilms), not by operating as individuals. Communication between bacteria is critical for biofilm formation, and is linked to their capacity to exchange DNA within and between species (competence). This is achieved by secretion and detection of small chemical signalling molecules (quorum sensing). Two such systems operate in the pneumococcus, a model Gram-positive organism. This project aims to elucidate the mechanism whereby these quorum sensing systems interact and collaborate to regulate biofilm formation and competence, phenotypes critical for bacterial survival. This knowledge will enable future development of novel antimicrobials. Read moreRead less
Generalised Degrees of Freedom and Probabilistic Regularisation. This project intends to develop novel statistical tools for more accurate prediction by taking account of model complexity and uncertainties associated with the fitting procedure. The project also plans to develop a novel shrinkage approach via new penalty functions to avoid over-fitting and asymptotic properties. The key applications may include genetic studies where the number of predictors is large and biological experiments whe ....Generalised Degrees of Freedom and Probabilistic Regularisation. This project intends to develop novel statistical tools for more accurate prediction by taking account of model complexity and uncertainties associated with the fitting procedure. The project also plans to develop a novel shrinkage approach via new penalty functions to avoid over-fitting and asymptotic properties. The key applications may include genetic studies where the number of predictors is large and biological experiments where multivariate and temporal data are often collected – for example economical breeding in animal and fish farming and more effectively detecting the genes of interest in genetic studies on human, animals and plants.Read moreRead less
Novel statistical methods for data with non-Euclidean geometric structure. This project aims to develop new flexible regression models and classification algorithms, along with robust and efficient inference methods, applicable to a wide range of non-Euclidean data types which arise in many fields of science, business and technology. There are serious flaws with currently available methods of analysis for non-Euclidean data. This project expects to transform such analyses by providing new quanti ....Novel statistical methods for data with non-Euclidean geometric structure. This project aims to develop new flexible regression models and classification algorithms, along with robust and efficient inference methods, applicable to a wide range of non-Euclidean data types which arise in many fields of science, business and technology. There are serious flaws with currently available methods of analysis for non-Euclidean data. This project expects to transform such analyses by providing new quantitative tools within a unifying framework. The anticipated project outcomes will be of mathematical interest and valuable in applications such as finance (predicting Australian stock returns); modelling electroencephalography data; Australian geochemical data, relating to sediments; and Australian X-ray tumour image data. Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE180100220
Funder
Australian Research Council
Funding Amount
$369,075.00
Summary
Statistics for manifold-valued data. This project aims to develop, and then implement, a new suite of fully flexible, interpretable and tractable models for manifold-valued data, along with robust and accurate estimation techniques for their parameters. Multivariate data with complicated constraints, such as manifold-valued data, is frequently encountered in the physical, biological and medical sciences, however it is difficult to define tractable statistical models and estimate their parameters ....Statistics for manifold-valued data. This project aims to develop, and then implement, a new suite of fully flexible, interpretable and tractable models for manifold-valued data, along with robust and accurate estimation techniques for their parameters. Multivariate data with complicated constraints, such as manifold-valued data, is frequently encountered in the physical, biological and medical sciences, however it is difficult to define tractable statistical models and estimate their parameters due to the curvature and nonlinear geometry of the sample space. The outcomes of the project are of direct mathematical interest as well as having significant interest to science and business disciplines where manifold-valued data is commonly observed.Read moreRead less
Linkage Infrastructure, Equipment And Facilities - Grant ID: LE160100127
Funder
Australian Research Council
Funding Amount
$355,000.00
Summary
Superresolution fluorescence imaging in microbiology. Superresolution fluorescence imaging in microbiology:
This project involves the purchase of new, and upgrade of existing, fluorescence imaging tools to facilitate the study of intracellular processes in microbial systems at significantly higher spatial and temporal resolutions than hitherto possible. Visualisation of the structure and dynamics of intracellular molecular assemblies at maximal resolution is required to understand protein funct ....Superresolution fluorescence imaging in microbiology. Superresolution fluorescence imaging in microbiology:
This project involves the purchase of new, and upgrade of existing, fluorescence imaging tools to facilitate the study of intracellular processes in microbial systems at significantly higher spatial and temporal resolutions than hitherto possible. Visualisation of the structure and dynamics of intracellular molecular assemblies at maximal resolution is required to understand protein function inside living cells. The new equipment is designed to provide a fast super-resolution imaging system to study the intracellular dynamics of proteins in vitro and a super-resolution microscope to visualise structures and assemblies inside microbes with a resolution of tens of nanometres, putting in vitro biochemistry into the context of a living cell. Read moreRead less
Linkage Infrastructure, Equipment And Facilities - Grant ID: LE210100156
Funder
Australian Research Council
Funding Amount
$289,500.00
Summary
3D Two-Photon Nanoprinter for Advanced Multi-Functional Materials & Devices. The Nanoscribe Photonic Professional GT2 Two-Photon 3D Printer enables tailoring materials’ architecture at nanoscale. This results in unique optical, mechanical, electrical, chemical, biochemical, and acoustic properties enabling a wealth of cutting-edge research activities in variety of fields including mechanical/optical/electrical metamaterials, bioinspired hard/soft materials, biomaterials (e.g., structured cell-ti ....3D Two-Photon Nanoprinter for Advanced Multi-Functional Materials & Devices. The Nanoscribe Photonic Professional GT2 Two-Photon 3D Printer enables tailoring materials’ architecture at nanoscale. This results in unique optical, mechanical, electrical, chemical, biochemical, and acoustic properties enabling a wealth of cutting-edge research activities in variety of fields including mechanical/optical/electrical metamaterials, bioinspired hard/soft materials, biomaterials (e.g., structured cell-tissue interfaces), biomedical devices (implantable devices and drug-delivery systems), nanofluidics, and photonic crystals. In each of these fields, we will use GT2 to print variety of polymers, hydrogels, metals and ceramics, for example by printing polymer-derived nanoceramics that will be simultaneously strong and tough.Read moreRead less
Linkage Infrastructure, Equipment And Facilities - Grant ID: LE120100131
Funder
Australian Research Council
Funding Amount
$150,000.00
Summary
Biomaterials characterisation facility. The convergence of nanotechnology and biotechnology offers new opportunities to prepare nanoengineered materials for applications in biomedicine. The Biomaterials Characterisation Facility will provide equipment to characterise such nanoengineered materials to underpin advances in therapeutic drug delivery and tissue engineering.
Metal Virulence and Therapeutic Factors in Pathogen Bioinorganic Chemistry. The aim is to gain insights into the bioinorganic chemistry that occurs when immune system cells encounter pathogens and the soles of virulence factors and immune system enhancing roles of metal ions. Pathogenic bacteria and fungi accumulate chromium (Cr) in their membranes/outer capsules, which we discovered is likely to be a previously unknown, but important, virulence factor. Hyperaccummulation of nickel (Ni) is also ....Metal Virulence and Therapeutic Factors in Pathogen Bioinorganic Chemistry. The aim is to gain insights into the bioinorganic chemistry that occurs when immune system cells encounter pathogens and the soles of virulence factors and immune system enhancing roles of metal ions. Pathogenic bacteria and fungi accumulate chromium (Cr) in their membranes/outer capsules, which we discovered is likely to be a previously unknown, but important, virulence factor. Hyperaccummulation of nickel (Ni) is also involved in virulence, whereas vanadium (V) enhances the immune system response to these pathogens. Fundamental insights into these roles of Cr, Ni and V will be investigated using advanced spectroscopic, imaging and biochemical techniques. These insights will provide new knowledge on the innate immune system.Read moreRead less