Conservation genomics of a critically endangered insect. This project aims to develop tools genotyping large animal genomes, focusing on the case of the Lord Howe Island stick insect, once thought to be extinct and now critically endangered. This project expects to generate molecular tools to monitor the genetic health the insect which has a large, complex and poorly understood genome. Expected outcomes include the development of a preservation and reintroduction strategy for the insect. This pr ....Conservation genomics of a critically endangered insect. This project aims to develop tools genotyping large animal genomes, focusing on the case of the Lord Howe Island stick insect, once thought to be extinct and now critically endangered. This project expects to generate molecular tools to monitor the genetic health the insect which has a large, complex and poorly understood genome. Expected outcomes include the development of a preservation and reintroduction strategy for the insect. This project will benefit ongoing conservation efforts, and is timely given the ongoing eradication of rats from Lord Howe Island where this species once lived. Read moreRead less
Evolution of halophytes: a phyloinformatic approach to understanding and exploiting the traits underlying salt-tolerance in plants. Salinity is an increasing burden on the Australian economy & environment, with >2 million ha of salt-affected land, at an annual cost to agriculture over $187 million. One solution is to exploit naturally salt-tolerant plants to increase productive agricultural land and restore salt-affected environments. To do this, we must increase basic knowledge of the diversity ....Evolution of halophytes: a phyloinformatic approach to understanding and exploiting the traits underlying salt-tolerance in plants. Salinity is an increasing burden on the Australian economy & environment, with >2 million ha of salt-affected land, at an annual cost to agriculture over $187 million. One solution is to exploit naturally salt-tolerant plants to increase productive agricultural land and restore salt-affected environments. To do this, we must increase basic knowledge of the diversity & distribution of salt-tolerance. This project is the first to use DNA sequences from thousands of species to understand the evolution of salt-tolerance in order to provide the foundation for the development of new crop varieties, selection of species that can be developed for bioremediation, and identification of traits that will be profitable targets for breeding programs. Read moreRead less
Landscape restoration genomics for climate adaptation in eucalyptus foundation species. Understanding the genetic basis of adaptation in foundation species will allow selection of pre-adapted seeds to establish resilient ecosystems which support the broad range of life supporting services. This project will apply genomics to solve real environmental challenges in restoration management and be a model for other foundation species.
Phylogenomic assessment of conservation priorities in two biodiversity hotspots: the Pilbara and the Kimberley. This project applies new sequencing and analytical methods to measure how much unique genetic diversity is represented in current and planned reserves across two biodiversity hotspots – the Pilbara and Kimberley of north-west Australia. It combines university, museum and conservation agency researchers to improve ongoing conservation planning.
Computational Intelligence for Complex Structured Data. This project aims to use computational intelligence techniques to reliably learn adaptive natural human pointing and gestures to control an interface on a pseudo-3D display. Highly complex data with interconnections between elements is hard to visualise on screens. Most current tools are operated using point/click/drag on 2D screens. The physical technology to capture appropriate human behaviours exists already, but not the adaptive learnin ....Computational Intelligence for Complex Structured Data. This project aims to use computational intelligence techniques to reliably learn adaptive natural human pointing and gestures to control an interface on a pseudo-3D display. Highly complex data with interconnections between elements is hard to visualise on screens. Most current tools are operated using point/click/drag on 2D screens. The physical technology to capture appropriate human behaviours exists already, but not the adaptive learning of the syntax and semantics of individual gestures and actions, nor the multi-gesture information fusion required for understanding, which could significantly enhance efficiency, for example, in sorting through named entities in an investigation. All of this is done naturally by most human beings, using biological neural networks.Read moreRead less
Genomics for persistence of Australian freshwater fish. Biodiversity faces an unpredictable cocktail of impacts and global environmental change, against which the best insurance is genetic diversity. We will develop genomic measures of ecological-genetic functions and evolutionary potential for managing Australian freshwater fish.
Flipping the mattress: infinite polyurethane recycling by synthetic biology. Australia is covered in billions of tonnes of plastic and yet <10% is recycled today. Polyurethane (PU) is ubiquitous in our everyday lives, from lacquer coatings to elastane clothing to durable foam padding in car seats, cushions and mattresses. Currently, there are few avenues for PU recycling and much ends up in landfill e.g., a single mattress produces 15-20kg of PU foam waste. Luckily, biodegradation of PU can occu ....Flipping the mattress: infinite polyurethane recycling by synthetic biology. Australia is covered in billions of tonnes of plastic and yet <10% is recycled today. Polyurethane (PU) is ubiquitous in our everyday lives, from lacquer coatings to elastane clothing to durable foam padding in car seats, cushions and mattresses. Currently, there are few avenues for PU recycling and much ends up in landfill e.g., a single mattress produces 15-20kg of PU foam waste. Luckily, biodegradation of PU can occur naturally via various microbial means and from insects, like Galleria mellonella larvae. The overall aim of this research project is to understand plastic biodegradation and translate nature’s solutions into flexible and efficient synthetic enzyme technologies that can sustainably recycle commonly used PU foams. Read moreRead less
Using genetics to recover Australia's lost history. This project aims to use historic hair samples collected by anthropological expeditions in the early 20th Century to generate the first genetic map of Aboriginal Australia – in order to reconstruct Australia’s pre-European genetic and cultural past. The map and the detailed contextual and genealogical information from museum archives will assist Aboriginal communities and individuals to reconstruct their personal and family history and trace an ....Using genetics to recover Australia's lost history. This project aims to use historic hair samples collected by anthropological expeditions in the early 20th Century to generate the first genetic map of Aboriginal Australia – in order to reconstruct Australia’s pre-European genetic and cultural past. The map and the detailed contextual and genealogical information from museum archives will assist Aboriginal communities and individuals to reconstruct their personal and family history and trace ancestry and augment oral or written records. The combination of cutting-edge science, detailed archival research, and a comprehensive family outreach and reporting program will be a step change in assisting Australia’s reconciliation process, the Stolen Generation, and repatriation of Indigenous remains.Read moreRead less
Upscaling genetic management of wildlife populations. Earth’s biodiversity is in crisis: many species are threatened with extinction and need our help. Genetic management helps to stop extinctions and promotes the health and continued existence of our wildlife. This project aims to understand how to use genome science to support preservation of four endangered species in changing climates and apply these learnings to help other species to survive and thrive. Anticipated outcomes include innovati ....Upscaling genetic management of wildlife populations. Earth’s biodiversity is in crisis: many species are threatened with extinction and need our help. Genetic management helps to stop extinctions and promotes the health and continued existence of our wildlife. This project aims to understand how to use genome science to support preservation of four endangered species in changing climates and apply these learnings to help other species to survive and thrive. Anticipated outcomes include innovative approaches to aid conservation decision-making, automated analyses of genome data, and improved conservation training. The expected benefits include larger, healthier populations of four species, new ways of saving other species, and the provision of important resources for conservation managers.Read moreRead less
Discovering Patterns using Near Unsupervised Leaning to Support the Quick Detection of New Animal Disease Outbreaks Caused by Viruses. Without the capability to identify and study the vast majority of extant viruses using traditional laboratory techniques, emerging threats to Australian livestock health cannot be efficiently diagnosed or treated. New approaches based on high-throughput sequencing have recently been developed to study such viruses, but making sense of the sequence data is still a ....Discovering Patterns using Near Unsupervised Leaning to Support the Quick Detection of New Animal Disease Outbreaks Caused by Viruses. Without the capability to identify and study the vast majority of extant viruses using traditional laboratory techniques, emerging threats to Australian livestock health cannot be efficiently diagnosed or treated. New approaches based on high-throughput sequencing have recently been developed to study such viruses, but making sense of the sequence data is still a complex problem. Together with the project's Partner Organisations, including YourGene Biosciences Australia and the CSIRO Australian Animal Health Laboratory, this project aims to develop new computational methods to broaden the scope of detection and analysis of unknown viruses, enhancing the capability for research into the causative viral agents of animal diseases.Read moreRead less