Evolution of halophytes: a phyloinformatic approach to understanding and exploiting the traits underlying salt-tolerance in plants. Salinity is an increasing burden on the Australian economy & environment, with >2 million ha of salt-affected land, at an annual cost to agriculture over $187 million. One solution is to exploit naturally salt-tolerant plants to increase productive agricultural land and restore salt-affected environments. To do this, we must increase basic knowledge of the diversity ....Evolution of halophytes: a phyloinformatic approach to understanding and exploiting the traits underlying salt-tolerance in plants. Salinity is an increasing burden on the Australian economy & environment, with >2 million ha of salt-affected land, at an annual cost to agriculture over $187 million. One solution is to exploit naturally salt-tolerant plants to increase productive agricultural land and restore salt-affected environments. To do this, we must increase basic knowledge of the diversity & distribution of salt-tolerance. This project is the first to use DNA sequences from thousands of species to understand the evolution of salt-tolerance in order to provide the foundation for the development of new crop varieties, selection of species that can be developed for bioremediation, and identification of traits that will be profitable targets for breeding programs. Read moreRead less
Phylogeography, evolution and taxonomy of humanity's greatest pest, Rattus rattus: Epidemiological, archaeological and conservation implications. This project will characterise a major threat to Australian biosecurity and health, and identify the range of likely disease risks associated with introductions of different 'strains' of black rat. It will provide critical data for management efforts around the world, especially for strategic partners in neighbouring Southeast Asian nations, as well as ....Phylogeography, evolution and taxonomy of humanity's greatest pest, Rattus rattus: Epidemiological, archaeological and conservation implications. This project will characterise a major threat to Australian biosecurity and health, and identify the range of likely disease risks associated with introductions of different 'strains' of black rat. It will provide critical data for management efforts around the world, especially for strategic partners in neighbouring Southeast Asian nations, as well as for conservation efforts within Australia. The data will also provide novel means to track the timing and routes of human prehistoric movements throughout the area. It will establish strategic research collaborations between researchers in zoological, medical, epidemiological, genetics, and conservation fields in a unique multi-disciplinary study.Read moreRead less
Field based molecular diagnostics for identification of plant parasitic nematodes. Nematodes are economically important pests of many agricultural and commercially grown plants. We have shown 'proof-of-concept' that plant parasitic nematodes can be identified by protein profiling using MALDI-TOF mass spectroscopy. In this project advanced techniques of proteomics and associated bioinformatics will be used to identify, isolate and characterise proteins that are specific to economically important ....Field based molecular diagnostics for identification of plant parasitic nematodes. Nematodes are economically important pests of many agricultural and commercially grown plants. We have shown 'proof-of-concept' that plant parasitic nematodes can be identified by protein profiling using MALDI-TOF mass spectroscopy. In this project advanced techniques of proteomics and associated bioinformatics will be used to identify, isolate and characterise proteins that are specific to economically important nematode species and races, and to identify diagnostic proteins or epitopes. The diagnostic proteins will be used to generate specific monoclonal antibodies that will be incorporated into immunochemical 'Lateral Flow' devices. These will provide on-site tests to identify nematodes for growers and quarantine services. Read moreRead less
Molecular analysis of photosynthetically-linked, active CO2 uptake and CO2 signal transduction by cyanobacteria (blue-green algae). Cyanobacteria (blue-green algae) have evolved a very efficient means of capturing and concentrating CO2 for photosynthetic fixation into sugars, the basic building blocks for cell growth. This process is dependent on the operation of several unique, active uptake systems for CO2 and HCO3-, with their genetic expression regulated by CO2 supply. This proposal will cap ....Molecular analysis of photosynthetically-linked, active CO2 uptake and CO2 signal transduction by cyanobacteria (blue-green algae). Cyanobacteria (blue-green algae) have evolved a very efficient means of capturing and concentrating CO2 for photosynthetic fixation into sugars, the basic building blocks for cell growth. This process is dependent on the operation of several unique, active uptake systems for CO2 and HCO3-, with their genetic expression regulated by CO2 supply. This proposal will capitalize on our progress in describing the functional genetics of this process and aims to elucidate the mechanism of active CO2 uptake and the way that cells sense the ambient CO2 concentration. The information gained is likely to be useful for designing improved crops.Read moreRead less
Combinatorial controlled gene expression delivering crops resistant to nematodes. Root-knot nematodes cause US$130 billion crop losses worldwide pa, and at least AUS$ 450 pa in Australia. Current control methods involve fumigation, chemicals (mainly carbamates and organophosphates), natural plant resistance and biological control. The fumigants (eg methyl bromide) are being phased out because they damage the ozone layer, most of the non-fumigants are being banned because of environmental damag ....Combinatorial controlled gene expression delivering crops resistant to nematodes. Root-knot nematodes cause US$130 billion crop losses worldwide pa, and at least AUS$ 450 pa in Australia. Current control methods involve fumigation, chemicals (mainly carbamates and organophosphates), natural plant resistance and biological control. The fumigants (eg methyl bromide) are being phased out because they damage the ozone layer, most of the non-fumigants are being banned because of environmental damage and persistence in groundwater, and biological control has had limited success. These problems are addressed in this project with development of synthetic plant resistance to nematodes, which will benefit horticultural and broadacre farming by reducing pathogen losses and improving quality.Read moreRead less
Photosynthetically active bicarbonate transporters from cyanobacteria & their rational redesign for application in engineered crops that use less water. Marine blue-green algae are critical components of global primary productivity and fisheries productivity but CO2 acquisition processes in these organisms are poorly understood. Our aim is to determine the protein structure and regulatory controls present in two classes of cyanobacterial bicarbonate transporters that are required for efficient p ....Photosynthetically active bicarbonate transporters from cyanobacteria & their rational redesign for application in engineered crops that use less water. Marine blue-green algae are critical components of global primary productivity and fisheries productivity but CO2 acquisition processes in these organisms are poorly understood. Our aim is to determine the protein structure and regulatory controls present in two classes of cyanobacterial bicarbonate transporters that are required for efficient photosynthesis. This information is now critical to the our goal of redesigning these bicarbonate transporters so they will be functional in plants, thereby contributing to the applied objective of engineering crop plants that could produce good grain yields with reduced water requirements.Read moreRead less
Molecular basis of the antimicrobial activity of the floral defensin, NaD1, for the plant pathogen Fusarium oxysporum. Filamentous fungi are responsible for many major plant diseases that result in devastating crop losses and food spoilage world wide. Currently there are no resistant cultivars or adequate chemical controls for many of these diseases. The plant defensin, NaD1, stops the growth of many pathogens, including the recalcitrant fungi Fusarium oxysporum and Botrytis cinerea, and has bee ....Molecular basis of the antimicrobial activity of the floral defensin, NaD1, for the plant pathogen Fusarium oxysporum. Filamentous fungi are responsible for many major plant diseases that result in devastating crop losses and food spoilage world wide. Currently there are no resistant cultivars or adequate chemical controls for many of these diseases. The plant defensin, NaD1, stops the growth of many pathogens, including the recalcitrant fungi Fusarium oxysporum and Botrytis cinerea, and has been shown to protect transgenic cotton against fungal infection in glasshouse and field trials. NaD1 has potential application for durable, broad spectrum fungal disease control in crops. This will lead to both environmental and economic benefits to Australia. Read moreRead less
A novel method of broad-acre weed seedbank management using a naturally occuring germination stimulant. The discovery of a novel butenolide that promotes seed germination has potential to provide significant economic benefits for Australia's agricultural sector, providing a vehicle to move towards minimum-weed agricultural systems achieved through broad-acre stimulation of the weed seedbank. Our aim is for butenolide to promote uniform release of weed seed dormancy, increased germination, and gr ....A novel method of broad-acre weed seedbank management using a naturally occuring germination stimulant. The discovery of a novel butenolide that promotes seed germination has potential to provide significant economic benefits for Australia's agricultural sector, providing a vehicle to move towards minimum-weed agricultural systems achieved through broad-acre stimulation of the weed seedbank. Our aim is for butenolide to promote uniform release of weed seed dormancy, increased germination, and greater synchrony in early stage seedling growth and thus more effective knock-down following herbicide applications.Read moreRead less
Mechanisms and manipulation of seed dormancy maintenance in annual ryegrass and other weed species. A better understanding of seed dormancy in annual ryegrass will lead to a greater variety of management options for removal of this weed from cropping zones, focusing on diminishing the weed seed bank. Additionally, the knowledge gained from the study of ryegrass could be applied to native species in terms of optimising germination of difficult species and conservation of seeds of rare species.
Functional genomics approaches to the mechanisms of starch mobilisation in Arabidopsis. Starch is a key carbon and energy reserve that underpins plant growth. This in turn underpins much of Australia's $60 billion agriculture industry. Starch also provides most of the calories in the human diet and is a renewable commodity supporting manufacturing industries. Dependence of society on starch will increase as it becomes used more for novel materials and for bio-ethanol production, which in turn w ....Functional genomics approaches to the mechanisms of starch mobilisation in Arabidopsis. Starch is a key carbon and energy reserve that underpins plant growth. This in turn underpins much of Australia's $60 billion agriculture industry. Starch also provides most of the calories in the human diet and is a renewable commodity supporting manufacturing industries. Dependence of society on starch will increase as it becomes used more for novel materials and for bio-ethanol production, which in turn will create new jobs in the rural economy. A major quality problem in cereal grain is pre-harvest starch breakdown caused by warm wet weather triggering events associated with germination. By understanding starch metabolism in plants we will be better able to manage and enhance growth of crop plants, starch production and seed quality.Read moreRead less