Efficient phylogenetic methods that manage the curse of genomic complexity. This project aims to develop new methods and software to infer the evolutionary history of organisms using genomic data. These new phylogenomic methods need to take account of the complexity of evolutionary processes and/or patterns in time (along the evolutionary tree) and space (along the genome). This project is significant because these methods must merge mathematics and statistics with High-Performance Computing to ....Efficient phylogenetic methods that manage the curse of genomic complexity. This project aims to develop new methods and software to infer the evolutionary history of organisms using genomic data. These new phylogenomic methods need to take account of the complexity of evolutionary processes and/or patterns in time (along the evolutionary tree) and space (along the genome). This project is significant because these methods must merge mathematics and statistics with High-Performance Computing to handle the huge quantities of genetic data and the complexity of evolution itself. An important expected outcome of this project will be the development and release of freely-available software that incorporates these new methods. This project expects to benefit scientists who need to infer phylogenies from genomic data. Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE190100544
Funder
Australian Research Council
Funding Amount
$344,682.00
Summary
The drivers of genome evolution and diversification in marsupials. This project aims to investigate the impact of the four basic forces of evolution, mutation, selection, neutral drift, and gene flow, on the genome. Genome-scale data have a signature of these forces and extracting it would greatly improve the quality of evolutionary models fit to the data, but the framework to identify the evolutionary forces has not been developed. This project will develop tests for assessing the impact of the ....The drivers of genome evolution and diversification in marsupials. This project aims to investigate the impact of the four basic forces of evolution, mutation, selection, neutral drift, and gene flow, on the genome. Genome-scale data have a signature of these forces and extracting it would greatly improve the quality of evolutionary models fit to the data, but the framework to identify the evolutionary forces has not been developed. This project will develop tests for assessing the impact of the primary evolutionary forces on the genome, and test these methods using simulations. The new framework of genomic analysis will be disseminated through an intuitive software package, and will be used to estimate with unprecedented confidence the history of diversification and genome evolution of marsupials.Read moreRead less
Unravelling the molecular diversity and evolution of centipede venoms. The project intends to improve understanding of venom evolution in centipedes. Venoms have emerged as a rich source of pharmacological tools with potential for development into therapeutics and bioinsecticides. However, venoms-based discovery has been limited by the narrow taxonomical range of animals studied, with many groups of venomous animals overlooked. One such group is centipedes, whose venoms contain diverse toxins th ....Unravelling the molecular diversity and evolution of centipede venoms. The project intends to improve understanding of venom evolution in centipedes. Venoms have emerged as a rich source of pharmacological tools with potential for development into therapeutics and bioinsecticides. However, venoms-based discovery has been limited by the narrow taxonomical range of animals studied, with many groups of venomous animals overlooked. One such group is centipedes, whose venoms contain diverse toxins that differ between taxa. This project aims to provide an insight into centipede venom evolution, and how it might be constrained by venom-gland morphology. This study seeks to contribute to our understanding of protein evolution and direct biodiscovery efforts around centipede venom.Read moreRead less
Moving between day and night: Navigational strategies and foraging costs of temporal niche partitioning. This study involves fundamental research to identify the navigational strategies and the foraging cost in animals that occupy different temporal niches. It will make use of the unique research opportunities in Australia, by working with endemic fauna that allows scientists to address questions that would otherwise be hard to answer. The project will introduce the novel technique of differenti ....Moving between day and night: Navigational strategies and foraging costs of temporal niche partitioning. This study involves fundamental research to identify the navigational strategies and the foraging cost in animals that occupy different temporal niches. It will make use of the unique research opportunities in Australia, by working with endemic fauna that allows scientists to address questions that would otherwise be hard to answer. The project will introduce the novel technique of differential GPS to track the paths of ants which has the potential to revolutionise the field of insect navigation. Salience-dependent navigational strategies analysed in this study will be of great interest in the field of engineering and robotics.Read moreRead less
Moving to be seen: a comprehensive analysis of movement-based signal design. Papers on visual motion processing and animal signal design regularly feature in major journals, and the programs of international conferences. We can thus be confident that theoretical advances will attract international attention. We will develop further state-of-the-art methods in motion analysis, with our overall approach likely to serve as a framework for future research programs, although our techniques will have ....Moving to be seen: a comprehensive analysis of movement-based signal design. Papers on visual motion processing and animal signal design regularly feature in major journals, and the programs of international conferences. We can thus be confident that theoretical advances will attract international attention. We will develop further state-of-the-art methods in motion analysis, with our overall approach likely to serve as a framework for future research programs, although our techniques will have applications outside of biology. In addition, we will learn much about the social behaviour of a group of native reptiles about which relatively little is known. Research on the social behaviour of animals is readily comprehended by non-specialists and plays an important role in attracting young people to careers in science.Read moreRead less
Evolution of Australia's globally unique hotspot of floral diversity. Australia has a globally recognised biodiversity hotspot, the southwest of Western Australia, but this unique eucalypt-dominated flora is threatened. This project will gain new insights into the evolutionary processes that generate and maintain such diversity, their vulnerability; and how the iconic eucalypts came to dominate the Australian landscape.
New approaches to understanding the forces driving convergent evolution. This project aims to address the evolutionary biology question of what drives convergent evolution of morphological phenotypes. Leveraging previous research on the phylogenetics of Australian reptiles and amphibians, the project will apply new methodological and analytical tools for quantifying and evaluating morphological diversity in a phylogenetic context. The project expects to test the influence of climate, habitat and ....New approaches to understanding the forces driving convergent evolution. This project aims to address the evolutionary biology question of what drives convergent evolution of morphological phenotypes. Leveraging previous research on the phylogenetics of Australian reptiles and amphibians, the project will apply new methodological and analytical tools for quantifying and evaluating morphological diversity in a phylogenetic context. The project expects to test the influence of climate, habitat and evolutionary history on driving convergent morphological evolution across multiple independent animal groups. The project will address fundamental theories on convergent evolution and will improve public awareness of Australia’s unique animals and their history.Read moreRead less
Phenotypic diversity dynamics at a continental scale. This project aims to build on previous research on the phylogenetics of Australian vertebrate animals to apply sophisticated new methodological and analytical tools for modelling species diversification. Australia is famous for the great diversity and uniqueness of its plants and animals, due in part to 40 million years of relative isolation. The project plans to test the influence of historical climate and habitat shifts on morphological evo ....Phenotypic diversity dynamics at a continental scale. This project aims to build on previous research on the phylogenetics of Australian vertebrate animals to apply sophisticated new methodological and analytical tools for modelling species diversification. Australia is famous for the great diversity and uniqueness of its plants and animals, due in part to 40 million years of relative isolation. The project plans to test the influence of historical climate and habitat shifts on morphological evolution and assembly of the Australian biota. This project could showcase Australia as the best place in the World to rigorously test hypotheses concerning rates of biological diversification at a continental scale.Read moreRead less
Biological diversification across Australia in space and time. This project aims to address fundamental questions about the diversification of Australian species and to have practical and impactful outcomes. It will leverage previous ARC funded research on the phylogenomics of Australian reptiles and amphibians and apply sophisticated analytical tools for quantifying and evaluating biological diversity in multiple dimensions and in a phylogenetic context. The expected outcomes include a publicly ....Biological diversification across Australia in space and time. This project aims to address fundamental questions about the diversification of Australian species and to have practical and impactful outcomes. It will leverage previous ARC funded research on the phylogenomics of Australian reptiles and amphibians and apply sophisticated analytical tools for quantifying and evaluating biological diversity in multiple dimensions and in a phylogenetic context. The expected outcomes include a publicly accessible comprehensive database that will be integrated with the Atlas of Living Australia and rigorous testing of a series of hypotheses concerning how old and recent Australian groups evolved in response to biotic invasions and climate change. Read moreRead less
Evolving rates: foundations for the next generation of molecular clocks. This project aims to investigate the causes and consequences of variation in rate of DNA sequence evolution across three kingdoms of life. Dates estimated from DNA sequences have a wide range of applications, including evolutionary biology, conservation prioritisation and epidemiology. These methods rely on accurate rate estimates, but current models lack information about the biological drivers of rates of genomic change. ....Evolving rates: foundations for the next generation of molecular clocks. This project aims to investigate the causes and consequences of variation in rate of DNA sequence evolution across three kingdoms of life. Dates estimated from DNA sequences have a wide range of applications, including evolutionary biology, conservation prioritisation and epidemiology. These methods rely on accurate rate estimates, but current models lack information about the biological drivers of rates of genomic change. This project will test reliability of current methods, identify potentially misleading estimates of disease origin or conservation priorities, and develop new approaches with empirically-informed models of rate change.Read moreRead less