Designing microarray experiments. Microarrays are powerful tools for surveying the expression levels of many thousands of genes simultaneously. They belong to the new genomics technologies which have important applications in the biological, pharmaceutical and agricultural sciences. There are many sources of uncertainty in microarray experimentation and good statistical designs are essential for ensuring that the effects of interest to scientists are accurately and precisely measured. This Pr ....Designing microarray experiments. Microarrays are powerful tools for surveying the expression levels of many thousands of genes simultaneously. They belong to the new genomics technologies which have important applications in the biological, pharmaceutical and agricultural sciences. There are many sources of uncertainty in microarray experimentation and good statistical designs are essential for ensuring that the effects of interest to scientists are accurately and precisely measured. This Project will develop novel designs for microarray experiments and focus on the advancement of topics crucial to Australia's success in technological research.
Read moreRead less
Functionally characterizing mammalian microRNAs and mRNA interactions controlling cell division. This project addresses some of the most burning issues in molecular biology and genetic research, and the results will be widely applicable to a broad range of fields, including biotechnology, animal breeding, agricultural production, genetic engineering, medical science, and computational biology. By understanding the regulatory potential of microRNA molecules, we will understand more about species ....Functionally characterizing mammalian microRNAs and mRNA interactions controlling cell division. This project addresses some of the most burning issues in molecular biology and genetic research, and the results will be widely applicable to a broad range of fields, including biotechnology, animal breeding, agricultural production, genetic engineering, medical science, and computational biology. By understanding the regulatory potential of microRNA molecules, we will understand more about species diversity, regulatory networks, and plant and animal development. The early adoption of multi-gigabase next-generation sequencing technology in Australia provides rare and exciting opportunity to lead the world in genome-scale research, and to ensure that Australia has the necessary skill base to remain internationally competitive in this field.Read moreRead less
Emergence of robust, stable structures via computation within natural networks. An ever-increasing challenge for modern society is the sheer complexity of vast infrastructures. Unexpected, and sometimes catastrophic, behaviour often emerges from interactions between elements of large systems. As a result, highly complex systems such as the Internet, international finance markets, and power grids are highly susceptible to costly problems such as cascading failures, inefficiency, and critical sens ....Emergence of robust, stable structures via computation within natural networks. An ever-increasing challenge for modern society is the sheer complexity of vast infrastructures. Unexpected, and sometimes catastrophic, behaviour often emerges from interactions between elements of large systems. As a result, highly complex systems such as the Internet, international finance markets, and power grids are highly susceptible to costly problems such as cascading failures, inefficiency, and critical sensitivity. High-tech industries, such as biotechnology and information networking, also face problems in coordinating swarms of interacting agents. This project will contribute to solving such problems by identifying and adapting solutions from nature.Read moreRead less
Dual phase evolution in networks. A grand challenge for modern society is the sheer complexity of vast networks arising from organizations and infrastructures. Unexpected, sometimes catastrophic, behaviour often emerges from interactions within such systems. As a result, the Internet, financial markets, power grids and other vital infrastructures are susceptible to costly problems such as cascading failures, inefficiency, and unpredictability. High-tech industries, such as biotechnology and info ....Dual phase evolution in networks. A grand challenge for modern society is the sheer complexity of vast networks arising from organizations and infrastructures. Unexpected, sometimes catastrophic, behaviour often emerges from interactions within such systems. As a result, the Internet, financial markets, power grids and other vital infrastructures are susceptible to costly problems such as cascading failures, inefficiency, and unpredictability. High-tech industries, such as biotechnology and information networking, face problems in coordinating networks of interacting agents. This project will expand the horizon of complex systems by deriving the design principles underpinning stable and resilient network structures and validate these principles on real world networks.Read moreRead less
Linkage Infrastructure, Equipment And Facilities - Grant ID: LE0347727
Funder
Australian Research Council
Funding Amount
$400,000.00
Summary
Computational infrastructure for high-throughput genome bioinformatics. We propose a high-performance computing and web facility for genome bioinformatics. It will provide a common software development environment in support of molecular biosciences, systems biology and complex systems modelling at the Institute for Molecular Bioscience at University of Queensland, and at Queensland University of Technology. The platform will support Australia's first genome-scale bioinformatics research website ....Computational infrastructure for high-throughput genome bioinformatics. We propose a high-performance computing and web facility for genome bioinformatics. It will provide a common software development environment in support of molecular biosciences, systems biology and complex systems modelling at the Institute for Molecular Bioscience at University of Queensland, and at Queensland University of Technology. The platform will support Australia's first genome-scale bioinformatics research website, with unique software and mirrors of the IBM Biological Pattern Discovery, UC San Diego MEME/MetaMEME/MAST, and NGI comparative genomics websites. Australian/NZ researchers will access the facility at no cost for high-throughput use of unique software, website mirrors and other important tools for genome bioinformatics.Read moreRead less
Manipulation of transcription factors that control plant architecture. This project will provide fundamental knowledge about how plant body plans are constructed and elaborated. In particular this proposal could influence agriculture in two manners. First, we will examine the ability to control infestations of parasitic plants in the field using the expression of small RNA molecules and second, we will determine whether manipulation of expression of specific transcription factors can alter the ....Manipulation of transcription factors that control plant architecture. This project will provide fundamental knowledge about how plant body plans are constructed and elaborated. In particular this proposal could influence agriculture in two manners. First, we will examine the ability to control infestations of parasitic plants in the field using the expression of small RNA molecules and second, we will determine whether manipulation of expression of specific transcription factors can alter the characteristics of secondary growth plants.Read moreRead less
Optimising vascularisation of tissue engineering chambers for construction of robust tissues. We have produced a device that has commercial application in several fields of basic science, biotechnology and bioengineering. When its full potential is achieved, our innovative organ chamber will strengthen Australia's standing in the biotechnology field and enrich specific applications. The knowledge gained from understanding the growth of blood vessels will benefit several fields including chemical ....Optimising vascularisation of tissue engineering chambers for construction of robust tissues. We have produced a device that has commercial application in several fields of basic science, biotechnology and bioengineering. When its full potential is achieved, our innovative organ chamber will strengthen Australia's standing in the biotechnology field and enrich specific applications. The knowledge gained from understanding the growth of blood vessels will benefit several fields including chemical bioengineering, tissue engineering and repair, polymer chemistry, therapeutics in many areas (like cancer, heart disease, diabetes), hormone manufacture for agricultural, veterinary and medical purposes and cosmetics manufacture. The project will train several post-doctoral fellows and PhD students in this cutting edge field of researchRead moreRead less
Linkage Infrastructure, Equipment And Facilities - Grant ID: LE0453608
Funder
Australian Research Council
Funding Amount
$579,230.00
Summary
Multifunctional confocal laser scanning microscope with time resolved and two photon imaging and fluorescence correlation capabilities. We seek to establish an Australian first confocal laser scanning microscope with time resolved imaging and fluorescence correlation spectroscopy capabilities. Its advantages include ultrasensitive detection of weak fluorescent emissions against high autofluorescent background by using fluorescence lifetime signatures, with over three orders of magnitude discrimi ....Multifunctional confocal laser scanning microscope with time resolved and two photon imaging and fluorescence correlation capabilities. We seek to establish an Australian first confocal laser scanning microscope with time resolved imaging and fluorescence correlation spectroscopy capabilities. Its advantages include ultrasensitive detection of weak fluorescent emissions against high autofluorescent background by using fluorescence lifetime signatures, with over three orders of magnitude discrimination improvement. The system will also be able to monitor binding of single molecules. These techniques will open new and exciting avenues for interdisciplinary research at the frontier between biological and physical sciences. The microscope will operate within an existing multi-user Optical Characterisation Facility supporting research of an established network of scientists in the Sydney area.Read moreRead less
Higher cognition and hemispheric specialization in an avian species: referential and intentional communication. We will discover whether alarm calls of Australian magpies, noted for their outstanding range of vocalisations, are referential (signalling predator type and location) and intentional (vocalised in specific contexts). Such complex communication , once thought to be unique to humans, has been found in some mammals and just one avian species, the domestic chick. This project will be the ....Higher cognition and hemispheric specialization in an avian species: referential and intentional communication. We will discover whether alarm calls of Australian magpies, noted for their outstanding range of vocalisations, are referential (signalling predator type and location) and intentional (vocalised in specific contexts). Such complex communication , once thought to be unique to humans, has been found in some mammals and just one avian species, the domestic chick. This project will be the first such investigation of an avian species in its natural habitat. This is important also because bird and mammalian brains are organised differently and birds offer a unique opportunity to discover whether one hemisphere is specialised for this purpose.Read moreRead less
Novel insecticidal neurotoxins from Australian spider venoms. Insecticidal toxins have considerable potential as novel biopesticides to combat the evolution of widespread insect resistance to classical chemical pesticides. This problem is increasing both in Australia and internationally. This study aims to isolate and pharmacologically characterise potent and selective insecticidal neurotoxins from Australian arachnids. Our laboratories will isolate neurotoxins from spider venoms, determine thei ....Novel insecticidal neurotoxins from Australian spider venoms. Insecticidal toxins have considerable potential as novel biopesticides to combat the evolution of widespread insect resistance to classical chemical pesticides. This problem is increasing both in Australia and internationally. This study aims to isolate and pharmacologically characterise potent and selective insecticidal neurotoxins from Australian arachnids. Our laboratories will isolate neurotoxins from spider venoms, determine their selectivity in insect and mammal bioassays, determine their primary and tertiary structures, and investigate their structure-function relationships by electrophysiological techniques. These functional and structural data will allow the future engineering, by molecular or synthetic procedures, of viral biopesticide analogues with increased potency, stability and selectivity.Read moreRead less