Chemical warfare at small scales: does eukaryotic chemical defense theory fit biofilms? The ecology of bacteria has long been treated separately from the ecology of higher organisms. Thus we do not know whether the ecology of bacteria operates by the same general rules as those of plants and animals. This significantly diminishes our understanding of the natural world, and our capacity to manage our environment. In this project we will systematically test ecological defense theories in bacterial ....Chemical warfare at small scales: does eukaryotic chemical defense theory fit biofilms? The ecology of bacteria has long been treated separately from the ecology of higher organisms. Thus we do not know whether the ecology of bacteria operates by the same general rules as those of plants and animals. This significantly diminishes our understanding of the natural world, and our capacity to manage our environment. In this project we will systematically test ecological defense theories in bacterial systems. Our aim is to merge our understanding of the ecology of these very different organisms. This integration of plant and animal ecology and environmental microbiology is new for both fields, and thus studies such as this one have the potential to put Australia at the forefront of this exciting new approach to our environment.Read moreRead less
The biology of integrons and their role in bacterial adaptation. Bacteria evolve in ways that animals and plants do not. One of the tools available is the ability to share genes amongst individuals in a community. One example of this is the very rapid spread of antibiotic resistance genes in pathogens. Here we will be studying a genetic element that greatly contributes to this horizontal spread of genes. This will lead to a better understanding of how bacteria work, the direct benefits of whic ....The biology of integrons and their role in bacterial adaptation. Bacteria evolve in ways that animals and plants do not. One of the tools available is the ability to share genes amongst individuals in a community. One example of this is the very rapid spread of antibiotic resistance genes in pathogens. Here we will be studying a genetic element that greatly contributes to this horizontal spread of genes. This will lead to a better understanding of how bacteria work, the direct benefits of which includes the discovery of new pathways and genes for the biotechnology industry and greater understanding of how bacteria cause disease in us, other animals and in commercial crops.Read moreRead less
A functional genomic approach for understanding metal ion adaptation in marine cyanobacteria. Unicellular marine cyanobacteria constitute 20-40% of total marine chlorophyll biomass and carbon fixation, and hence significantly impact the global carbon cycle and are very relevant to combating global warming. This research will reveal some of the major mechanisms by which marine cyanobacteria have adapted to metal levels in coastal and oligotrophic environments. Thus these results will help us und ....A functional genomic approach for understanding metal ion adaptation in marine cyanobacteria. Unicellular marine cyanobacteria constitute 20-40% of total marine chlorophyll biomass and carbon fixation, and hence significantly impact the global carbon cycle and are very relevant to combating global warming. This research will reveal some of the major mechanisms by which marine cyanobacteria have adapted to metal levels in coastal and oligotrophic environments. Thus these results will help us understand the distribution and diversity of these organisms in relation to global primary productivity. They will also lead to the development of more robust biomarkers for metal stress and pollution in coastal environments.Read moreRead less
Understanding fungal diversity and functioning in forest soils using molecular and stable isotope approaches. The project aims to investigate fungal community structure and functioning in forest soils using novel molecular, stable isotope and physiological approaches. This will provide new insights into the linkage between diversity and functioning in forest soil fungal communities and the importance of these organisms in ecosystem processes. In addition, this pioneering research will facilitate ....Understanding fungal diversity and functioning in forest soils using molecular and stable isotope approaches. The project aims to investigate fungal community structure and functioning in forest soils using novel molecular, stable isotope and physiological approaches. This will provide new insights into the linkage between diversity and functioning in forest soil fungal communities and the importance of these organisms in ecosystem processes. In addition, this pioneering research will facilitate development and refinement of methodologies that will pave the way for future investigations of fungal ecology. The on-going collaboration will produce high quality joint publications and provide significant opportunities for early career researchers to gain international experience in a dynamic research environment.Read moreRead less
Cultivating numerically significant soil bacteria. The vast majority of soil bacteria have not been able to be studied in the laboratory because they cannot be grown outside the soil. They are therefore termed unculturable. Most of these belong to groups that are completely unstudied. Advances made in the Janssen lab have overcome this impediment to laboratory cultivation of numerically abundant and globally distributed soil bacteria. This project will develop these advances to generate simple a ....Cultivating numerically significant soil bacteria. The vast majority of soil bacteria have not been able to be studied in the laboratory because they cannot be grown outside the soil. They are therefore termed unculturable. Most of these belong to groups that are completely unstudied. Advances made in the Janssen lab have overcome this impediment to laboratory cultivation of numerically abundant and globally distributed soil bacteria. This project will develop these advances to generate simple and widely applicable methods to enable many of the previously unculturable soil bacteria to be studied. This will allow assessments of their ecological roles and biotechnological potentials to be made.Read moreRead less
Understanding the mechanism of Wolbachia-mediated antiviral protection. Insects are involved in the transmission of many viral diseases of both plants and animals. A considerable number of these diseases have adverse effects for public health or cause large economic losses in agriculture. We were the first to discover that a common bacteria protects insects from virus infection. Knowledge of the mechanisms used by the bacteria to interfere with virus accumulation will facilitate novel strategies ....Understanding the mechanism of Wolbachia-mediated antiviral protection. Insects are involved in the transmission of many viral diseases of both plants and animals. A considerable number of these diseases have adverse effects for public health or cause large economic losses in agriculture. We were the first to discover that a common bacteria protects insects from virus infection. Knowledge of the mechanisms used by the bacteria to interfere with virus accumulation will facilitate novel strategies for control of virus disease. The findings of this project will enable Australian researchers and industry to design innovative approaches to control diseases that are transmitted by insects.Read moreRead less
Environmental influence on evolutionary processes in bacterial populations. Bacterial populations exhibit remarkable adaptive capabilities in many environmental and medical settings. They respond to environmental stress in terms of altered gene expression, but what are the effects on mutation rates and fitness when cells grow at suboptimal growth rates? We plan to test whether the physiological state of an ancestral population is a determinant of a population's subsequent response to selection. ....Environmental influence on evolutionary processes in bacterial populations. Bacterial populations exhibit remarkable adaptive capabilities in many environmental and medical settings. They respond to environmental stress in terms of altered gene expression, but what are the effects on mutation rates and fitness when cells grow at suboptimal growth rates? We plan to test whether the physiological state of an ancestral population is a determinant of a population's subsequent response to selection. A simple model system using controlled culture conditions will be used to investigate the linkage between environment, mutation rate and fitness under selection. Demonstration of these linkages will have significant impacts on microbiology and understanding evolution.Read moreRead less
Evolutionary and ecological complexity in an experimentally controlled environment. Understanding the capacity and mechanism of microbial evolution provides the framework for developing new strategies for preventing infectious disease. If we know how evolution works, it will be possible to hamper the capacity to evolve as a mechanism of preventing new diseases and controlling existing ones. This project will provide a mechanistic description of evolution in real time under controlled conditions. ....Evolutionary and ecological complexity in an experimentally controlled environment. Understanding the capacity and mechanism of microbial evolution provides the framework for developing new strategies for preventing infectious disease. If we know how evolution works, it will be possible to hamper the capacity to evolve as a mechanism of preventing new diseases and controlling existing ones. This project will provide a mechanistic description of evolution in real time under controlled conditions. This detailed information will be used in the education of the public and in debates about evolution. The project will also train at least five students in molecular and evolutionary microbiology, essential for facing future challenges.
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Targeted isolation of specific marine bacterial species associated with higher organsims for the purpose of discovering new antimicrobial compounds. Specific bacterial species that are commonly found in association with marine plants and animals often produce active secondary metabolites. The aim of this project is to apply our understanding of these bacterial-host associations to the targeted isolation of novel antimicrobials from the marine environment. While these new compounds will undoubted ....Targeted isolation of specific marine bacterial species associated with higher organsims for the purpose of discovering new antimicrobial compounds. Specific bacterial species that are commonly found in association with marine plants and animals often produce active secondary metabolites. The aim of this project is to apply our understanding of these bacterial-host associations to the targeted isolation of novel antimicrobials from the marine environment. While these new compounds will undoubtedly have a number of commercial applications this project focuses on the development of products for dental hygiene in animals. Generally, the urgent need for new antimicrobial compounds to combat the growing number of microbes that are resistant to current antibiotics highlights the importance of this project.Read moreRead less
Quantum Dot Nanocrystals: Smart Materials for Microbiology. Quantum dots were originally developed for computers but have many advantages over fluorescent dyes currently in use. They can be coupled to larger structures and a excitation with a laser allows simultaneous multiple analyses ("multiplexing"). We propose to adapt these structures for use in microbial ecology because this field is one of the least understood areas in biology. The technology we will develop will have far broader uses, a ....Quantum Dot Nanocrystals: Smart Materials for Microbiology. Quantum dots were originally developed for computers but have many advantages over fluorescent dyes currently in use. They can be coupled to larger structures and a excitation with a laser allows simultaneous multiple analyses ("multiplexing"). We propose to adapt these structures for use in microbial ecology because this field is one of the least understood areas in biology. The technology we will develop will have far broader uses, and will create new diagnostic tools for monitoring and understanding microbial ecosystems would be invaluable in a number of fields. Examples are medical diagnostics, waste-water treatment, bioremediation, food and agriculture, bioprotection and biodiscovery.Read moreRead less