Saddlepoint approximation, likelihood analysis and ancestral graphs for strong and weak natural selection, genetic drift and population subdivision. Building new research strength in theoretical population genetics and related statistical techniques will enhance Australia's capability in harnessing the power of post-genomic information. Sophisticated statistical techniques that make smart use of genetic data are being developed in this project. The extent to which natural selection and migrati ....Saddlepoint approximation, likelihood analysis and ancestral graphs for strong and weak natural selection, genetic drift and population subdivision. Building new research strength in theoretical population genetics and related statistical techniques will enhance Australia's capability in harnessing the power of post-genomic information. Sophisticated statistical techniques that make smart use of genetic data are being developed in this project. The extent to which natural selection and migration affect current genetic polymorphism on a population level can be quantified using these new methods. New modeling provides a rigorous foundation with which to construct inference techniques currently beyond computational approaches to the data. Assessing selective effects on genetic mutations associated with human disease will be a consequence of this new statistical methodology.Read moreRead less
Simulating viral evolution and genetic complexity. This project has direct relevance to understanding the growth of viral infections, and therefore has possible practical applications in disease research and control. Examples of these are emerging diseases in humans such as those caused by HIV-1, SARS coronavirus and Dengue virus, which cause considerable human suffering throughout the world. A major part of current research into these diseases involves attempts to model the evolutionary geneti ....Simulating viral evolution and genetic complexity. This project has direct relevance to understanding the growth of viral infections, and therefore has possible practical applications in disease research and control. Examples of these are emerging diseases in humans such as those caused by HIV-1, SARS coronavirus and Dengue virus, which cause considerable human suffering throughout the world. A major part of current research into these diseases involves attempts to model the evolutionary genetics and dynamics of virus populations in order to understand how to control epidemics, develop vaccines and design drugs. The research program is designed to provide new computational modelling tools for this purpose, which may have wider applications as well.
Read moreRead less
The role of genome reorganisation in adaptation and speciation. Local adaptation and speciation are fundamental evolutionary processes that rely on changes to the genome. However, the role of genome architecture (e.g. chromosomal rearrangements, gene duplications) in driving these processes is poorly understood. This project will use advanced comparative genomics and bioinformatics to examine the role of chromosome rearrangements in driving adaptation and speciation, and evaluate rates of molec ....The role of genome reorganisation in adaptation and speciation. Local adaptation and speciation are fundamental evolutionary processes that rely on changes to the genome. However, the role of genome architecture (e.g. chromosomal rearrangements, gene duplications) in driving these processes is poorly understood. This project will use advanced comparative genomics and bioinformatics to examine the role of chromosome rearrangements in driving adaptation and speciation, and evaluate rates of molecular evolution between the X-chromosome and autosomes. Utilising Australia’s endemic mammalian fauna as a tractable model system, I will link population processes with macro-evolutionary outcomes to show how genome architecture underpins biodiversity.Read moreRead less
A network perspective for ecosystem responses to plant invasion. Invasive species are key drivers of global change, yet, our understanding of their negative impacts on ecosystems is limited within many contexts. This project will provide the first large-scale test for interactions between plants and microbes, via network analyses, as yardsticks for invasive species impacts on ecosystems. Using innovative approaches that link interactions network properties with ecosystem functioning, the fundame ....A network perspective for ecosystem responses to plant invasion. Invasive species are key drivers of global change, yet, our understanding of their negative impacts on ecosystems is limited within many contexts. This project will provide the first large-scale test for interactions between plants and microbes, via network analyses, as yardsticks for invasive species impacts on ecosystems. Using innovative approaches that link interactions network properties with ecosystem functioning, the fundamental data generated in this study will answer unsolved theoretical questions, providing evidence for the use of networks to predict and mitigate invader impacts. These benefits are not only crucial for biodiversity managers but also for those responsible for sustainable crop development under future climates.Read moreRead less
Integrated Farm Modelling to Improve Resilience and Sustainable Prosperity. This project aims to improve farm resilience, farm management, and economic decision-making in Australia and internationally. It expects to generate new interdisciplinary knowledge to integrate our understanding of agro-ecosystems and innovative tools to assess their status and manage their operations more effectively. Expected outcomes include the ability to inform farmers, bankers, and land managers about the trade-off ....Integrated Farm Modelling to Improve Resilience and Sustainable Prosperity. This project aims to improve farm resilience, farm management, and economic decision-making in Australia and internationally. It expects to generate new interdisciplinary knowledge to integrate our understanding of agro-ecosystems and innovative tools to assess their status and manage their operations more effectively. Expected outcomes include the ability to inform farmers, bankers, and land managers about the trade-offs between resilience and efficiency on farms. This should provide significant benefits, including the ability to minimize financial risks to farmers and banks, allow better investment decisions, and achieve sustainable long-term outcomes for both private and public well-being.Read moreRead less
Will trees get enough nitrogen to sustain productivity in elevated CO2? The project proposes to explore how tissue nitrogen declines in future elevated carbon dioxide (eCO2) by studying the availability of soil nitrogen to plants and use of nitrogen by Eucalyptus woodland trees. Plant canopy nitrogen concentrations decline in nearly every large-scale eCO2 study done on native soils. The project plans to explore how changes in ecosystem nitrogen balance occur, by investigating if leaf nitrogen de ....Will trees get enough nitrogen to sustain productivity in elevated CO2? The project proposes to explore how tissue nitrogen declines in future elevated carbon dioxide (eCO2) by studying the availability of soil nitrogen to plants and use of nitrogen by Eucalyptus woodland trees. Plant canopy nitrogen concentrations decline in nearly every large-scale eCO2 study done on native soils. The project plans to explore how changes in ecosystem nitrogen balance occur, by investigating if leaf nitrogen declines under eCO2 due to the balance of plant activity versus changes in soil nitrogen availability. The outcomes are central to knowing the extent to which extra nitrogen ‘feeds’ the eCO2 fertilisation response and sustains long-term increases in productivity. Expected outcomes may support the development of management options to sustain future forest productivity.Read moreRead less
Woodland response to elevated CO2 in free air carbon dioxide enrichment: does phosphorus limit the sink for Carbon? This project will determine if growth of Australian woodland trees is limited by phosphorus, and if that limitation means the woodland carbon sink is constrained from responding to rising atmospheric CO2. Assessing the CO2 sink capacity of native eucalypt woodland is central to meeting Australia's domestic and international carbon accounting commitments.
Does climatic thermal variability matter? This project aims to research how annual and daily variability in temperature effects the distribution of species, their tolerance to temperature, their dispersal ability and genetic structuring. Expected outcomes include more accurate assessment of the ecological risk of climate change, which is expected to result in altered average temperatures and temperature variability. Such assessments will result in better management of species and ecosystems faci ....Does climatic thermal variability matter? This project aims to research how annual and daily variability in temperature effects the distribution of species, their tolerance to temperature, their dispersal ability and genetic structuring. Expected outcomes include more accurate assessment of the ecological risk of climate change, which is expected to result in altered average temperatures and temperature variability. Such assessments will result in better management of species and ecosystems facing threats from climate change.Read moreRead less
Drought-induced mortality in arid-zone tree species: a mechanistic study. This project aims to determine the relative importance of elevated temperature and increased vapour pressure deficit during drought in causing drought induced mortality (DIM). The outcomes of this project will be an enhanced ability to predict future mortality in response to a warmer and atmospherically drier climate. This will benefit the development of future management strategies and our ability to predict drought impac ....Drought-induced mortality in arid-zone tree species: a mechanistic study. This project aims to determine the relative importance of elevated temperature and increased vapour pressure deficit during drought in causing drought induced mortality (DIM). The outcomes of this project will be an enhanced ability to predict future mortality in response to a warmer and atmospherically drier climate. This will benefit the development of future management strategies and our ability to predict drought impacts on landscape function and productivity.Read moreRead less