Computing the climate-life history nexus for Australia's fauna. Life histories are the trajectories organisms follow as they develop, grow, reproduce and age; they are shaped by evolution and limited by the physical and biological environment. Recent breakthroughs by the CI allow the computation of life histories in any sequence of climatic environments, with demonstrated potential to gain new insights into the past, present and future responses of species to climate variability and change. This ....Computing the climate-life history nexus for Australia's fauna. Life histories are the trajectories organisms follow as they develop, grow, reproduce and age; they are shaped by evolution and limited by the physical and biological environment. Recent breakthroughs by the CI allow the computation of life histories in any sequence of climatic environments, with demonstrated potential to gain new insights into the past, present and future responses of species to climate variability and change. This project aims to apply the new methods to understand how species' life histories have adapted to Australia's unique physical conditions and predict how they will respond to future conditions. It will simultaneously lay the foundations for a long-term, open-access research program on species' climate responses.Read moreRead less
Unifying the mechanisms that drive spatial patterns in biological traits. The project aims to resolve the mechanisms that generate spatial variation in biological traits. This project expects to overcome several significant shortcomings of previous investigations by using mechanistic modelling, field-based ecophysiological studies, and macroecological analyses to develop a single, integrated approach to investigating geographic variation in size, colour, life history and reproduction. The expect ....Unifying the mechanisms that drive spatial patterns in biological traits. The project aims to resolve the mechanisms that generate spatial variation in biological traits. This project expects to overcome several significant shortcomings of previous investigations by using mechanistic modelling, field-based ecophysiological studies, and macroecological analyses to develop a single, integrated approach to investigating geographic variation in size, colour, life history and reproduction. The expected outcomes are a comprehensive empirical test of a unified mechanism for spatial trait variation, using a diverse terrestrial vertebrate lineage as a model system. The results of this study should provide a powerful framework for predicting future patterns of biological trait variation under anthropogenic climate change.Read moreRead less
Evolution and role of neo-sex chromosomes in mitonuclear co-evolution. This project aims to characterize the evolution of novel, extended sex chromosomes in an Australian bird, then elucidate their role in climate-associated adaptive evolution. The species falls into two lineages bearing distinct mitochondrial genomes and nuclear-encoded mitochondrial genes carried on sex chromosomes. The project aims to test whether this extraordinary genome arrangement is splitting the species into two forms: ....Evolution and role of neo-sex chromosomes in mitonuclear co-evolution. This project aims to characterize the evolution of novel, extended sex chromosomes in an Australian bird, then elucidate their role in climate-associated adaptive evolution. The species falls into two lineages bearing distinct mitochondrial genomes and nuclear-encoded mitochondrial genes carried on sex chromosomes. The project aims to test whether this extraordinary genome arrangement is splitting the species into two forms: one adapted to hotter, drier environments, one to milder ones. This would be tackled using an innovative combination of genomics, cytogenetics, and metabolic data. Understanding the mechanisms at play would represent a major advance in ecology and evolution, with potential implications for conservation management.Read moreRead less
Can mitochondrial and nuclear co-evolution drive climate adaptation? This project aims to reveal whether co-evolution between the mitochondrial genome of a wild bird and partner nuclear genes is causing the species to split into two forms, one adapted to inland environments and one to coastal conditions. Mitochondrial-nuclear co-evolution has great potential to illuminate new modes of climate adaptation and lineage divergence. This understanding will provide significant benefits, with implicatio ....Can mitochondrial and nuclear co-evolution drive climate adaptation? This project aims to reveal whether co-evolution between the mitochondrial genome of a wild bird and partner nuclear genes is causing the species to split into two forms, one adapted to inland environments and one to coastal conditions. Mitochondrial-nuclear co-evolution has great potential to illuminate new modes of climate adaptation and lineage divergence. This understanding will provide significant benefits, with implications for conservation management.Read moreRead less
Conservation genomics of a critically endangered insect. This project aims to develop tools genotyping large animal genomes, focusing on the case of the Lord Howe Island stick insect, once thought to be extinct and now critically endangered. This project expects to generate molecular tools to monitor the genetic health the insect which has a large, complex and poorly understood genome. Expected outcomes include the development of a preservation and reintroduction strategy for the insect. This pr ....Conservation genomics of a critically endangered insect. This project aims to develop tools genotyping large animal genomes, focusing on the case of the Lord Howe Island stick insect, once thought to be extinct and now critically endangered. This project expects to generate molecular tools to monitor the genetic health the insect which has a large, complex and poorly understood genome. Expected outcomes include the development of a preservation and reintroduction strategy for the insect. This project will benefit ongoing conservation efforts, and is timely given the ongoing eradication of rats from Lord Howe Island where this species once lived. Read moreRead less
Unlocking the secrets of the mitochondrion. This project aims to determine the frequency and mechanisms by which male-harming mutations (those with negative effects limited to males) accrue within the mitochondrial DNA. Theory predicts maternal inheritance of mitochondrial DNA will lead to accumulation of these mutations, but the real-world implications of this theory are unknown. Leveraging an innovative approach, this project expects to generate new knowledge into the causes of sex differences ....Unlocking the secrets of the mitochondrion. This project aims to determine the frequency and mechanisms by which male-harming mutations (those with negative effects limited to males) accrue within the mitochondrial DNA. Theory predicts maternal inheritance of mitochondrial DNA will lead to accumulation of these mutations, but the real-world implications of this theory are unknown. Leveraging an innovative approach, this project expects to generate new knowledge into the causes of sex differences in physiology and health. Expected outcomes include insights that advance understanding of fundamental biological processes, and training of students. Expected benefits include strengthening of Australia’s research capacity, by setting the research agenda in this rapidly developing field.Read moreRead less
Recombination and the genomic landscape of speciation. This project aims to evaluate how genomes become different during the origin of species by utilising an innovative system where multiple replicates of the speciation process exist. This project expects to generate knowledge in the area of speciation genetics by exploring the effects of sex, migration and selection on the diversity of hundreds of genomes from an Australian wildflower. Expected outcomes of this project include a deeper underst ....Recombination and the genomic landscape of speciation. This project aims to evaluate how genomes become different during the origin of species by utilising an innovative system where multiple replicates of the speciation process exist. This project expects to generate knowledge in the area of speciation genetics by exploring the effects of sex, migration and selection on the diversity of hundreds of genomes from an Australian wildflower. Expected outcomes of this project include a deeper understanding of the maintenance of genetic diversity in natural populations, and development of a model organism for studying the genetics and ecology of speciation. This project should provide significant benefits including enhanced capacity in evolutionary genetics in Australia.Read moreRead less
The role of genome reorganisation in adaptation and speciation. Local adaptation and speciation are fundamental evolutionary processes that rely on changes to the genome. However, the role of genome architecture (e.g. chromosomal rearrangements, gene duplications) in driving these processes is poorly understood. This project will use advanced comparative genomics and bioinformatics to examine the role of chromosome rearrangements in driving adaptation and speciation, and evaluate rates of molec ....The role of genome reorganisation in adaptation and speciation. Local adaptation and speciation are fundamental evolutionary processes that rely on changes to the genome. However, the role of genome architecture (e.g. chromosomal rearrangements, gene duplications) in driving these processes is poorly understood. This project will use advanced comparative genomics and bioinformatics to examine the role of chromosome rearrangements in driving adaptation and speciation, and evaluate rates of molecular evolution between the X-chromosome and autosomes. Utilising Australia’s endemic mammalian fauna as a tractable model system, I will link population processes with macro-evolutionary outcomes to show how genome architecture underpins biodiversity.Read moreRead less
Genomic vulnerability . Aims: This project aims to validate genomic predictions of species’ vulnerability to climate change.
Significance: Species are already responding to climate change, and many face high predicted rates of extinction. Some species will be able to avoid extinction via evolutionary adaptation. Yet we currently lack the ability to accurately predict which species do and do not have the capacity to adapt and avoid extinction.
Expected outcomes: Expected outcomes of this project ....Genomic vulnerability . Aims: This project aims to validate genomic predictions of species’ vulnerability to climate change.
Significance: Species are already responding to climate change, and many face high predicted rates of extinction. Some species will be able to avoid extinction via evolutionary adaptation. Yet we currently lack the ability to accurately predict which species do and do not have the capacity to adapt and avoid extinction.
Expected outcomes: Expected outcomes of this project include enhanced ability to predict species’ vulnerability to ongoing climate change.
Benefits: This project should significantly improve our capacity to manage threatened and keystone species by identifying those that will require targeted conservation management.
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