Molecular tracing of spectacled flying-fox (Pteropus conspicillatus) movements in rainforests and orchards of wet tropical Queensland. This project uses molecular markers to trace movements of spectacled flying-foxes in the wet tropics of north Queensland. The intention is to determine the origins of bats visiting orchards, determine patterns of seasonal and intra-seasonal migration of bats and to document the significance of such migrations to estimation of population numbers and trends. These ....Molecular tracing of spectacled flying-fox (Pteropus conspicillatus) movements in rainforests and orchards of wet tropical Queensland. This project uses molecular markers to trace movements of spectacled flying-foxes in the wet tropics of north Queensland. The intention is to determine the origins of bats visiting orchards, determine patterns of seasonal and intra-seasonal migration of bats and to document the significance of such migrations to estimation of population numbers and trends. These data are critical to conservation of bat populations, to the ecologically sustainable development of fruit growing in the region and the long term sustainable management of the Wet Tropics World Heritage Area.Read moreRead less
Patterns of connectivity and hot-spots of recruitment: a basis for prioritising high value coastal rivers. Provision of water for agricultural, industrial and residential use is becoming increasingly difficult in Australia. By determining the need for important migratory fish species to have access to marine conditions, this project aims to assist managers to identify river systems where changing flow patterns will be particularly detrimental. The project will provide information about the ne ....Patterns of connectivity and hot-spots of recruitment: a basis for prioritising high value coastal rivers. Provision of water for agricultural, industrial and residential use is becoming increasingly difficult in Australia. By determining the need for important migratory fish species to have access to marine conditions, this project aims to assist managers to identify river systems where changing flow patterns will be particularly detrimental. The project will provide information about the need for artificial opening of estuary mouths, fish ladders and other practical means to ensure the continued survival of these species. Read moreRead less
Next generation metagenomics. Applying the latest scientific advances supports society directly through promoting a knowledge based economy, as well as indirectly through securing agricultural productivity, improved biomedical applications and a greater understanding of our changing environment. Establishing these methods places Australia at the forefront of genomics technology with direct applications for Australian biomedical and biotechnology industries. Applying next generation sequencing fo ....Next generation metagenomics. Applying the latest scientific advances supports society directly through promoting a knowledge based economy, as well as indirectly through securing agricultural productivity, improved biomedical applications and a greater understanding of our changing environment. Establishing these methods places Australia at the forefront of genomics technology with direct applications for Australian biomedical and biotechnology industries. Applying next generation sequencing for metagenomics will provide a detailed understanding of microbial population structures and lead to advances in biomedicine, agriculture and environmental science. Read moreRead less
Towards selective breeding of pearl oysters - quantitative and population genetics of the silver-lipped pearl oyster Pinctada maxima. Successful selective breeding programs rely on two critical factors; i) an understanding of the genetic processes underpinning phenotypic expression of commercially important traits and ii) a reliable method to retain pedigrees so that the rate of inbreeding can be controlled. This project will utilise modern quantitative and molecular genetic approaches to genera ....Towards selective breeding of pearl oysters - quantitative and population genetics of the silver-lipped pearl oyster Pinctada maxima. Successful selective breeding programs rely on two critical factors; i) an understanding of the genetic processes underpinning phenotypic expression of commercially important traits and ii) a reliable method to retain pedigrees so that the rate of inbreeding can be controlled. This project will utilise modern quantitative and molecular genetic approaches to generate for the first time fundamental information on the role genetics has on growth and pearl quality traits in the silver-lipped pearl oyster Pinctada maxima. Outcomes from this project when integrated into a selective breeding program for this species will dramatically transform the international competitiveness of this valuable industry.Read moreRead less
Linking genes with the phenotype - creation of a genetic linkage map for the silver-lipped pearl oyster Pinctada maxima. R&D undertaken in this project will increase our fundamental understanding of the role genetics plays in production of a premium quality cultured South Sea pearl. When utilised in future selective breeding programs aimed at improving pearl quality traits the information generated will allow Australian pearling companies to be more productive and to maintain a competitive advan ....Linking genes with the phenotype - creation of a genetic linkage map for the silver-lipped pearl oyster Pinctada maxima. R&D undertaken in this project will increase our fundamental understanding of the role genetics plays in production of a premium quality cultured South Sea pearl. When utilised in future selective breeding programs aimed at improving pearl quality traits the information generated will allow Australian pearling companies to be more productive and to maintain a competitive advantage over their rivals. Many rural communities are dependent on pearling companies for their economic prosperity and community identity. Consequently, positive growth of the pearl industry as a result of the proposed R&D will greatly benefit the economic and social wealth of these rural populations.Read moreRead less
Novel genomic technologies to improve fertility in northern beef cattle. This project aims to develop new genomic technologies to enable accelerated improvement of cow fertility. Increased global demand for beef is driving northern Australian beef enterprises to develop innovative ways to increase productivity. A substantial industry challenge is poor fertility of cows, with weaning rates frequently less than 40%. The expected outcomes of this project are an improvement in weaning rates to enabl ....Novel genomic technologies to improve fertility in northern beef cattle. This project aims to develop new genomic technologies to enable accelerated improvement of cow fertility. Increased global demand for beef is driving northern Australian beef enterprises to develop innovative ways to increase productivity. A substantial industry challenge is poor fertility of cows, with weaning rates frequently less than 40%. The expected outcomes of this project are an improvement in weaning rates to enable accelerated genetic gain for fertility in these enterprises by delivering a low cost array, which assays thousands of DNA variants affecting fertility simultaneously. This should provide significant benefits such as a new genomic prediction method informed by gene expression data from a unique resource of Brahman cattle with exceptionally high fertility, generating significant industry benefits.Read moreRead less
The link between environmental stress and disease onset in prawn aquaculture. The federal government has set a target for prawn aquaculture production to increase fourfold by 2010. A major barrier is disease: losses of 20% of production to viral diseases are not uncommon. To be internationally competitive, Australia needs to develop high health production systems. Most prawn stock carry chronic viral infections, but only exhibit disease symptoms following environmental stress. This project will ....The link between environmental stress and disease onset in prawn aquaculture. The federal government has set a target for prawn aquaculture production to increase fourfold by 2010. A major barrier is disease: losses of 20% of production to viral diseases are not uncommon. To be internationally competitive, Australia needs to develop high health production systems. Most prawn stock carry chronic viral infections, but only exhibit disease symptoms following environmental stress. This project will identify environmental stressors that activate viral disease in Penaeus monodon. Outcomes will be incorporated into on-farm managerial regimes to minimize risk of crop loss to disease. Development of biomarkers as indicators of stress related risks may be commercialized.Read moreRead less
Insect age: an ecological genomics approach to understanding host-parasite interactions. The importance of insect age (or the age structure of a population of insects) in understanding relationships between insects and their abiotic and biotic environment has been stressed in many theoretical studies but seldom directly tested. This is because few tools exist that can accurately measure the age of a wild-caught insect with any accuracy. In this proposal we plan to use a genomics approach to deve ....Insect age: an ecological genomics approach to understanding host-parasite interactions. The importance of insect age (or the age structure of a population of insects) in understanding relationships between insects and their abiotic and biotic environment has been stressed in many theoretical studies but seldom directly tested. This is because few tools exist that can accurately measure the age of a wild-caught insect with any accuracy. In this proposal we plan to use a genomics approach to develop tools that can be used to efficiently determine the age of an insect and then apply these tools to better understand the relationship between insect age and the ability of an insect to transmit pathogens to humans, livestock or plants. These tools will also have future applicability in developing new approaches to control insect transmitted disease as well as provide methodology to determine the effectiveness of current control programs that seek to kill pest insect populations of agricultural or public health significance.Read moreRead less
FastStack - evolutionary computing to stack desirable alleles in wheat. This project aims to investigate rapid development of new, high-yielding wheat varieties with appropriate disease resistance. An emerging challenge in wheat breeding is how to stack desirable alleles for disease resistance, drought, and end-use quality into new varieties with high yielding backgrounds in the shortest time. As the number of known desirable alleles for these traits increases, the number of possible crossing c ....FastStack - evolutionary computing to stack desirable alleles in wheat. This project aims to investigate rapid development of new, high-yielding wheat varieties with appropriate disease resistance. An emerging challenge in wheat breeding is how to stack desirable alleles for disease resistance, drought, and end-use quality into new varieties with high yielding backgrounds in the shortest time. As the number of known desirable alleles for these traits increases, the number of possible crossing combinations that need to be considered increases. This project aims to use evolutionary computing with speed breeding and genomic selection, in the partners breeding program, to address this challenge. Potential outcomes will lead to more profitable wheat varieties for Australian growers, and expanded exports to high value markets that require quality grain.Read moreRead less
Optimising barramundi production through early prediction of thermal tolerance and growth. Aquaculture is Australia's fastest growing primary industry and is increasingly becoming an important employer in regional Australia. Consequently, positive growth in this sector linked to productivity gains through R&D will result in improved socioeconomic prosperity of regional communities. This project will allow barramundi farmers to identify highly productive families early on in the culture process, ....Optimising barramundi production through early prediction of thermal tolerance and growth. Aquaculture is Australia's fastest growing primary industry and is increasingly becoming an important employer in regional Australia. Consequently, positive growth in this sector linked to productivity gains through R&D will result in improved socioeconomic prosperity of regional communities. This project will allow barramundi farmers to identify highly productive families early on in the culture process, thereby improving their efficiency of farming and increasing their international competitiveness in the rapidly expanding global market. The project will also establish Australia at the forefront of biotechnological research and its applications to aquaculture.Read moreRead less