Genetic Basis of Variable Expression of Glycan Xeno-Autoantigens by Cattle. Meat and dairy products from cattle contain sugar structures (glycans) that are not made by humans. These structures can be recognised by the immune system and lead to allergic reactions, inflammation and potentially cancer. These non-human structures are called xeno-autoantigens or XAs. We have discovered individual cattle that do not produce one of these XAs. We will study the gene required to make XA in the XA-free ca ....Genetic Basis of Variable Expression of Glycan Xeno-Autoantigens by Cattle. Meat and dairy products from cattle contain sugar structures (glycans) that are not made by humans. These structures can be recognised by the immune system and lead to allergic reactions, inflammation and potentially cancer. These non-human structures are called xeno-autoantigens or XAs. We have discovered individual cattle that do not produce one of these XAs. We will study the gene required to make XA in the XA-free cattle to find the underlying mutation. The same approach will be used to look for natural XA-free individuals in other food species. This knowledge may enable us to create a test to facilitate the natural breeding of non-GMO, XA-free livestock to benefit Australian primary producers and provide safer food for consumers.Read moreRead less
Improving the efficiency of bovine oocyte maturation in vitro. For the dairy and beef industries, the hundreds of eggs (oocytes) in a high value cow's ovary that fail to produce a pregnancy are a wasted genetic resource. A key technology to unlocking this resource is in vitro maturation of oocytes, but the process is inefficient. One possible cause is that the current approaches to maturing oocytes in vitro do not adequately mimic the natural process in vivo. We will design new systems to matu ....Improving the efficiency of bovine oocyte maturation in vitro. For the dairy and beef industries, the hundreds of eggs (oocytes) in a high value cow's ovary that fail to produce a pregnancy are a wasted genetic resource. A key technology to unlocking this resource is in vitro maturation of oocytes, but the process is inefficient. One possible cause is that the current approaches to maturing oocytes in vitro do not adequately mimic the natural process in vivo. We will design new systems to mature cow oocytes in vitro by altering the chemical composition of maturation medium, thus improving the efficiency of laboratory embryo production and related technologies.Read moreRead less
A generic decision-making design environment to enable end users in rural industries to develop expert systems. Successful decision support systems developed by end-users has been limited: our proposed approach advances this capability. Using natural representations of industry knowledge, this project will specify a generic design environment in which industry end-users can develop relevant decision support systems. It extends expert systems technologies to overcome known limitations, increasin ....A generic decision-making design environment to enable end users in rural industries to develop expert systems. Successful decision support systems developed by end-users has been limited: our proposed approach advances this capability. Using natural representations of industry knowledge, this project will specify a generic design environment in which industry end-users can develop relevant decision support systems. It extends expert systems technologies to overcome known limitations, increasing context and relevance and encouraging user uptake. Key industry stakeholders will select relevant problems to identify decision categories, leading to specification of the generic design environment. This promises improved decision quality for dairy farmers in the recently deregulated dairy industry; the design environment will be transferable to other rural industries.Read moreRead less
An integrated genomics approach to improve our understanding of the biology of genital campylobacteriosis in beef cattle. Beef is Australia's most valuable agricultural export estimated at $9.6B annually and this industry accounts for one-third of full time employment in regional communities. Currently, unknown causes of reproductive losses in cattle in Northern Australian cost producers approximately $15M per annum. Bovine genital campylobacteriosis is one of the major risk factors associated w ....An integrated genomics approach to improve our understanding of the biology of genital campylobacteriosis in beef cattle. Beef is Australia's most valuable agricultural export estimated at $9.6B annually and this industry accounts for one-third of full time employment in regional communities. Currently, unknown causes of reproductive losses in cattle in Northern Australian cost producers approximately $15M per annum. Bovine genital campylobacteriosis is one of the major risk factors associated with this high cost due to the inability to accurately diagnose the disease. This research will integrate genomics and bioinformatics with infection and vaccination models to improve our understanding of the biology of the disease to develop appropriate control strategies securing Australia's beef industry.Read moreRead less
DNA methylation in IVF and cloned embryos. In vitro fertilisation (IVF) and cloning are new assisted reproductive technologies that in time will revolutionise genetic improvement of Australia's economically important animals. IVF and cloning can be associated with aberrant growth that results from atypical gene expression. DNA methylation is central to gene regulation and determines which genes are expressed. In this project a new technique will be used to quantify DNA methylation in naturall ....DNA methylation in IVF and cloned embryos. In vitro fertilisation (IVF) and cloning are new assisted reproductive technologies that in time will revolutionise genetic improvement of Australia's economically important animals. IVF and cloning can be associated with aberrant growth that results from atypical gene expression. DNA methylation is central to gene regulation and determines which genes are expressed. In this project a new technique will be used to quantify DNA methylation in naturally conceived, IVF and cloned embryos. The information will be used to improve IVF and cloning so that these technologies can be applied with confidence to increase the international competitiveness of Australia's livestock industries.Read moreRead less
Epigenetic and biomarker approaches to improving dairy cow fertility. The dairy industry will not deliver sustainable higher productivity unless the reproductive performance of dairy cows is significantly improved. This expected outcome will be achieved via the identification of epigenetic and protein biomarkers of improved fertility that will be used to develop superior breeding stock. Caruncular and intercaruncular tissues and blood have been obtained from both fertile (New Zealand Holstein-Fr ....Epigenetic and biomarker approaches to improving dairy cow fertility. The dairy industry will not deliver sustainable higher productivity unless the reproductive performance of dairy cows is significantly improved. This expected outcome will be achieved via the identification of epigenetic and protein biomarkers of improved fertility that will be used to develop superior breeding stock. Caruncular and intercaruncular tissues and blood have been obtained from both fertile (New Zealand Holstein-Friesian) and sub-fertile (North American Holstein-Friesian) cows within pasture-based dairying systems that include seasonal calving and subclinical uterine inflammation (associated with poor reproductive performance). Determinations will be conducted using deep parallel (next generation) sequencing and mass spectrometry.Read moreRead less
Evaluation of Bacillus amyloliquefaciens H57 as a probiotic in livestock using animal nutrition studies and metagenomics. To improve animal production, gene sequencing will unravel how microbial communities in the rumen of sheep and cattle and the gastro intestinal tract of poultry respond to feed quality and probiotic bacteria. The animal nutrition trials will also measure weight gain and feed utilisation efficiency, particularly for nitrogen, protein and energy.
Subcellular co-localisation of interacting proteins that control maturation in mammalian eggs. The final maturation of mammalian eggs (oocytes) before fertilisation involves a cascade of interactions between protein kinases and phosphatases, the shuttling of these proteins between cytoplasm and nucleus, and microtubule assembly and disassembly. In this project we have proposed that interacting proteins involved in oocyte maturation are co-localised at subcellular sites in oocytes, in a strict t ....Subcellular co-localisation of interacting proteins that control maturation in mammalian eggs. The final maturation of mammalian eggs (oocytes) before fertilisation involves a cascade of interactions between protein kinases and phosphatases, the shuttling of these proteins between cytoplasm and nucleus, and microtubule assembly and disassembly. In this project we have proposed that interacting proteins involved in oocyte maturation are co-localised at subcellular sites in oocytes, in a strict temporal and spatial manner. The co-localisation of proteins in oocytes is considered a fundamental mechanism that ensures coordination of time-bound cellular events and proper preparation of oocytes for fertilisation and early embryo development. There are important implications for IVF and cloning by nuclear transfer.Read moreRead less
Identification of at-risk transition cows: Use of exosomal biomarkers. This project aims to improve the early diagnosis of cows at risk of infectious disease and debilitating metabolic syndromes. Animal health and longevity are pillars of the dairy industry. The risk of death is up to 6 times greater during the transition from pregnancy to lactation, making this ‘transition period’ the time for detection and intervention. If successful, this project will permit the focus of resources on high ris ....Identification of at-risk transition cows: Use of exosomal biomarkers. This project aims to improve the early diagnosis of cows at risk of infectious disease and debilitating metabolic syndromes. Animal health and longevity are pillars of the dairy industry. The risk of death is up to 6 times greater during the transition from pregnancy to lactation, making this ‘transition period’ the time for detection and intervention. If successful, this project will permit the focus of resources on high risk cows and reduce poor outcomes: lower milk production, involuntary culling and increased cow maintenance costs. Within this overall objective, a cost-effective project design will leverage partner facilities and existing networks to translate findings to farm use, thereby clearly delivering economic value.Read moreRead less
The extent, causes and implications of pleiotropy among complex traits. The project seeks to understand how a DNA mutation can affect many characters or traits. Many traits are called complex because they are controlled by a very large number of genes, most of which have small effects. Complex traits include traits important in medicine (such as susceptibility to heart disease) and in agriculture (such as tenderness of meat). Because there are many genes affecting each trait, most genes have sma ....The extent, causes and implications of pleiotropy among complex traits. The project seeks to understand how a DNA mutation can affect many characters or traits. Many traits are called complex because they are controlled by a very large number of genes, most of which have small effects. Complex traits include traits important in medicine (such as susceptibility to heart disease) and in agriculture (such as tenderness of meat). Because there are many genes affecting each trait, most genes have small effects which makes them hard to identify. The fact that a mutation that has a small effect on a complex trait also has a larger effect on a less complex trait may help us to identify the mutation and use it in agriculture or medicine.Read moreRead less