Uncovering vertebrate lifespan biodiversity with whole genome sequencing. This project aims to integrate existing data on the genetic mechanisms of lifespan evolution in model systems with a novel combination of whole genome sequencing and comparative phylogenomics to reveal the common genomic signatures of lifespan evolution in vertebrates. Expected outcomes include a perspective on the evolution of lifespan, a topic of major health interest for Australia and the rest of the developed world. Th ....Uncovering vertebrate lifespan biodiversity with whole genome sequencing. This project aims to integrate existing data on the genetic mechanisms of lifespan evolution in model systems with a novel combination of whole genome sequencing and comparative phylogenomics to reveal the common genomic signatures of lifespan evolution in vertebrates. Expected outcomes include a perspective on the evolution of lifespan, a topic of major health interest for Australia and the rest of the developed world. This will provide significant benefits, such as long-term implications for aging research, with possible business applications. It will also increase Australia’s visibility and competitiveness in the developing field of bioinformatics.Read moreRead less
The role of leaf veins in vascular plant evolution. Leaves are continuously irrigated by a system of internal plumbing that defines their maximum photosynthetic output, and angiosperms are the most productive plants on earth largely by virtue of a uniquely efficient system of leaf plumbing. This project will identify how such an important modification of leaf water transport came to evolve.
Predicting invertebrate life cycles under variable climates. This project seeks to characterise and predict the responses of invertebrates to climate variability and climate change. Alterations to the developmental trajectory are a major way that organisms adapt their life cycles to climatic variability. Many invertebrates avoid extremes of heat, cold and dry by entering a quiescent or diapause state, often at the egg stage. This project plans to apply novel high-throughput methods for character ....Predicting invertebrate life cycles under variable climates. This project seeks to characterise and predict the responses of invertebrates to climate variability and climate change. Alterations to the developmental trajectory are a major way that organisms adapt their life cycles to climatic variability. Many invertebrates avoid extremes of heat, cold and dry by entering a quiescent or diapause state, often at the egg stage. This project plans to apply novel high-throughput methods for characterising developmental patterns in the eggs of invertebrates in conjunction with microclimate models and modern phylogenetic methods to understand and predict responses to climatic variability. The methods are expected to be transferable to other invertebrates and may lead to breakthroughs in pest management and conservation.Read moreRead less
Phenotypic plasticity and plant water use in a changing climate: a multi-species, multi-site investigation. Plants are highly responsive to the conditions under which they grow, but the combination of conditions they experience will be altered under climate change. This research into plant responses to the novel environments posed by climate change will examine plasticity in water-use-traits to better predict native plant tolerance of climate change.
Efficient phylogenetic methods that manage the curse of genomic complexity. This project aims to develop new methods and software to infer the evolutionary history of organisms using genomic data. These new phylogenomic methods need to take account of the complexity of evolutionary processes and/or patterns in time (along the evolutionary tree) and space (along the genome). This project is significant because these methods must merge mathematics and statistics with High-Performance Computing to ....Efficient phylogenetic methods that manage the curse of genomic complexity. This project aims to develop new methods and software to infer the evolutionary history of organisms using genomic data. These new phylogenomic methods need to take account of the complexity of evolutionary processes and/or patterns in time (along the evolutionary tree) and space (along the genome). This project is significant because these methods must merge mathematics and statistics with High-Performance Computing to handle the huge quantities of genetic data and the complexity of evolution itself. An important expected outcome of this project will be the development and release of freely-available software that incorporates these new methods. This project expects to benefit scientists who need to infer phylogenies from genomic data. Read moreRead less
New phylogenetic approaches for understanding evolution at the genome scale. This project aims to use genome data to improve our understanding of the evolutionary process, including the forces that shape evolution on a whole-genome scale. The project plans to create a curated database of genome sequences and a comprehensive framework for evolutionary analyses of genomes. The new approach is designed to be used to analyse patterns of evolutionary rate variation to identify the key features of gen ....New phylogenetic approaches for understanding evolution at the genome scale. This project aims to use genome data to improve our understanding of the evolutionary process, including the forces that shape evolution on a whole-genome scale. The project plans to create a curated database of genome sequences and a comprehensive framework for evolutionary analyses of genomes. The new approach is designed to be used to analyse patterns of evolutionary rate variation to identify the key features of genome evolution. In addition, the development of a genome-scale approach to molecular dating will improve estimates of the timescale of the Tree of Life. This project is expected to yield useful insights into molecular evolution and to provide a valuable guide for future evolutionary analyses of genomes.Read moreRead less
Predictability in evolution: From behaviour to genome. This project aims to determine whether evolution is primarily unpredictable and stochastic, or predictable and constrained along certain pathways. By using a natural experiment that caused wood-feeding cockroaches to evolve into soil-burrowing cockroaches in response to climate change millions of years ago, this project will determine how the genomes of these organisms responded. This will show whether the same molecular changes are repeated ....Predictability in evolution: From behaviour to genome. This project aims to determine whether evolution is primarily unpredictable and stochastic, or predictable and constrained along certain pathways. By using a natural experiment that caused wood-feeding cockroaches to evolve into soil-burrowing cockroaches in response to climate change millions of years ago, this project will determine how the genomes of these organisms responded. This will show whether the same molecular changes are repeatedly used in the evolution of complex traits, including burrow construction. This will contribute to the understanding of how predictable evolution is at the molecular level, and provide insights into how genomes change in response to prolonged climate change.Read moreRead less
Testing links between genomic and morphological evolutionary rates. This project aims to identify, understand, and characterise patterns of evolutionary rates across different levels of biological variation. The project expects to generate knowledge about the tempo and mode of evolution by using a phylogenetic approach to test fundamental models of evolutionary rates, including the link between rates of genomic and morphological evolution. Expected outcomes of this project include detailed insig ....Testing links between genomic and morphological evolutionary rates. This project aims to identify, understand, and characterise patterns of evolutionary rates across different levels of biological variation. The project expects to generate knowledge about the tempo and mode of evolution by using a phylogenetic approach to test fundamental models of evolutionary rates, including the link between rates of genomic and morphological evolution. Expected outcomes of this project include detailed insights into the tempo and mode of macroevolution, better modelling of genomic and phenotypic evolution, and improved design of studies in evolutionary genomics. Benefits of the project include greater understanding of the evolutionary processes that have generated the diversity of the Australian biota.Read moreRead less
Directed evolution of ancestral bacterial flagellar motors. This project aims to produce new knowledge concerning the adaptation of bacterial species to wide environmental changes. The bacterial flagellar motor (BFM) is a motor 40 nanometers in diameter that builds itself into bacterial membranes, rotates five times faster than a Formula One engine, and switches directions in milliseconds. . This project will combine ancestral reconstruction of ancient motor components with protein engineering t ....Directed evolution of ancestral bacterial flagellar motors. This project aims to produce new knowledge concerning the adaptation of bacterial species to wide environmental changes. The bacterial flagellar motor (BFM) is a motor 40 nanometers in diameter that builds itself into bacterial membranes, rotates five times faster than a Formula One engine, and switches directions in milliseconds. . This project will combine ancestral reconstruction of ancient motor components with protein engineering to understand how the different ion channels that power the BFM in different species are selective for different positive ions. It will inspire and inform future manufacturing in bionanotechnology.Read moreRead less
Mechanisms of colour production and the evolution of animal signals. This project aims to reveal how diverse colours are produced in reptiles and the information these colours convey about individual health, condition and performance. The project evaluates how stress affects both pigment deposition and the nano-structure of cells and tissues, which together produce colour. By comparing similar colours generated by two entirely different classes of pigment (carotenoids and pteridines), this proje ....Mechanisms of colour production and the evolution of animal signals. This project aims to reveal how diverse colours are produced in reptiles and the information these colours convey about individual health, condition and performance. The project evaluates how stress affects both pigment deposition and the nano-structure of cells and tissues, which together produce colour. By comparing similar colours generated by two entirely different classes of pigment (carotenoids and pteridines), this project will provide new insights into the evolution of animal coloration, and will significantly enhance our understanding of pteridines, one of the most prevalent but least understood classes of pigment in vertebrates.Read moreRead less