Mathematical Methods for Next Generation Sequencing. The emergence of a new generation of high throughput genomic sequencing technologies is providing unprecedented opportunities for biological research. Hidden within the huge amounts of data generated by this technology is information about the expression and regulation of genes, and the complex functional purpose of non-coding, so called 'junk', DNA. Development of mathematical and statistical tools is essential to interpreting these data. The ....Mathematical Methods for Next Generation Sequencing. The emergence of a new generation of high throughput genomic sequencing technologies is providing unprecedented opportunities for biological research. Hidden within the huge amounts of data generated by this technology is information about the expression and regulation of genes, and the complex functional purpose of non-coding, so called 'junk', DNA. Development of mathematical and statistical tools is essential to interpreting these data. The proposed research will enhance Australia's reputation for developing novel quantitative techniques at the cutting edge of modern biology. The proposed project has a broad range of potential applications in biotechnology, particularly in the medical and agricultural industries.Read moreRead less
Guiding principles and guardrails for genetic association studies. This project aims to investigate deep connections between genetic structure (population genetic processes, linkage disequilibrium and population structure) and the ability to statistically detect genetic variants responsible for variation in traits. The project expects to generate new knowledge in the areas of statistics, mathematics and biology through an innovative, multidisciplinary approach that synthesises and extends founda ....Guiding principles and guardrails for genetic association studies. This project aims to investigate deep connections between genetic structure (population genetic processes, linkage disequilibrium and population structure) and the ability to statistically detect genetic variants responsible for variation in traits. The project expects to generate new knowledge in the areas of statistics, mathematics and biology through an innovative, multidisciplinary approach that synthesises and extends foundational disciplinary results. Expected outcomes of this project include principles and methodology that underpin future genetic association studies by supplying a framework for interpreting results. This should provide significant benefits by reducing false conclusions and their associated costs.Read moreRead less
Statistical and Mathematical Analyses of Sequence and Array Data. Development of mathematical and statistical methods and tools in bioinformation science will ensure that Australia is at the cutting-edge of modern biology. This will enhance Australia's reputation for dealing with the exponentially growing body of genomic data emerging from life sciences laboratories throughout the world. The proposed project has a broad range of potential applications in biotechnology, particularly in the medic ....Statistical and Mathematical Analyses of Sequence and Array Data. Development of mathematical and statistical methods and tools in bioinformation science will ensure that Australia is at the cutting-edge of modern biology. This will enhance Australia's reputation for dealing with the exponentially growing body of genomic data emerging from life sciences laboratories throughout the world. The proposed project has a broad range of potential applications in biotechnology, particularly in the medical and agricultural industries. Examples include improvements to livestock, in plant breeding such as drought resistance, and better genetic disease diagnosis, including earlier cancer diagnosis, and personalised treatment.Read moreRead less
Novel techniques for statistical and mathematical analyses of sequence data. Algorithms will be developed for analysing and comparing the sequences of DNA letters and amino acids constantly being generated in massive quantities by biological research. The novel approach taken is based on the statistical frequency of occurrence of short words and is designed specifically for situations where current methods fail.
Mathematical models of diseases with complex transmission routes. This project aims to model diseases that spread via a mixture of routes including food, water, the environment, and direct spread between individuals. Key diseases include: avian influenza, which causes massive disruption to the poultry industry; gastroenteritis, which costs Australia $1,250 million each year; and leptospirosis, which causes one million severe illnesses each year globally. This project will develop mathematical a ....Mathematical models of diseases with complex transmission routes. This project aims to model diseases that spread via a mixture of routes including food, water, the environment, and direct spread between individuals. Key diseases include: avian influenza, which causes massive disruption to the poultry industry; gastroenteritis, which costs Australia $1,250 million each year; and leptospirosis, which causes one million severe illnesses each year globally. This project will develop mathematical and statistical tools to better estimate risk, analyse outbreak data, and provide guidance for disease control. This research will improve policy and enhance our ability to respond to disease outbreaks.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE120101529
Funder
Australian Research Council
Funding Amount
$375,000.00
Summary
Transmission dynamics modelling of zoonotic neglected tropical diseases. This project will develop mathematical models to simulate zoonotic disease transmission and control. Results will provide novel insight for policy makers into effective interventions for schistosomiasis, echinococcosis and clonorchiasis, as well as provide a methodological platform for adaptation to other zoonotic emerging and re-emerging diseases.
Quantum Networks: Dynamics, Design and Control. The outcomes of this project have the potential to enhance the ability of researchers in Australia to invent significant new quantum technologies. The outcomes will provide researchers with new ways to consider architecture design for quantum technologies, new concepts and tools to help them model devices and systems, to interconnect them, to control them, to build them, and to understand how they behave. This will help place Australia in a leadi ....Quantum Networks: Dynamics, Design and Control. The outcomes of this project have the potential to enhance the ability of researchers in Australia to invent significant new quantum technologies. The outcomes will provide researchers with new ways to consider architecture design for quantum technologies, new concepts and tools to help them model devices and systems, to interconnect them, to control them, to build them, and to understand how they behave. This will help place Australia in a leading position internationally to engineer new quantum technologies.Read moreRead less
Linear Dynamical Quantum Networks: Synthesis and Control. Australia is recognized as a leader in the international race to develop quantum technologies of the future. This project will strengthen Australia's profile in quantum technology engineering by developing a new theory for building arbitrary complex linear quantum mechanical control systems for control tasks in quantum technology, and presenting new control system design tools to support high performance quantum communication systems. The ....Linear Dynamical Quantum Networks: Synthesis and Control. Australia is recognized as a leader in the international race to develop quantum technologies of the future. This project will strengthen Australia's profile in quantum technology engineering by developing a new theory for building arbitrary complex linear quantum mechanical control systems for control tasks in quantum technology, and presenting new control system design tools to support high performance quantum communication systems. The project outcomes together with advances in experimental physics are anticipated to play an important role in the long term as enablers of viable quantum technologies that can provide new commercial opportunities for Australian hi-tech industries to benefit Australia's economy in the future.Read moreRead less
New quantum and robust control theory with applications to quantum optics. The application of quantum mechanics to the creation of quantum technology promises to be one of the most exciting technological developments of this century. Possible applications of quantum technologies include vastly improved sensors to search for minerals or gravity waves, secure quantum cryptography, and quantum computing. Quantum feedback control is a key tool in quantum technology. This project will lay the fou ....New quantum and robust control theory with applications to quantum optics. The application of quantum mechanics to the creation of quantum technology promises to be one of the most exciting technological developments of this century. Possible applications of quantum technologies include vastly improved sensors to search for minerals or gravity waves, secure quantum cryptography, and quantum computing. Quantum feedback control is a key tool in quantum technology. This project will lay the foundations of systematic theories of robust, coherent and nonlinear quantum feedback control and lead to advances in the control of highly resonant systems which underlie experimental quantum and nano technology. This will enable Australia to reap great benefits as this new technological area emerges.Read moreRead less
Sequence to Sequence: Rigorous Statistical and Mathematical Analysis of Biological Sequence Data. Comparative genomics is fundamental for developing an understanding of genes and their function. For example, using statistical and computational techniques, it was recently demonstrated that 60% of genes are conserved between fly and human. When the human gene that confers susceptibility to Parkinson's disease was transferred into the fly it caused symptoms similar to those seen in humans. The futu ....Sequence to Sequence: Rigorous Statistical and Mathematical Analysis of Biological Sequence Data. Comparative genomics is fundamental for developing an understanding of genes and their function. For example, using statistical and computational techniques, it was recently demonstrated that 60% of genes are conserved between fly and human. When the human gene that confers susceptibility to Parkinson's disease was transferred into the fly it caused symptoms similar to those seen in humans. The future development of 'personalized medicine' will rely upon understanding the function of human genes, as will progress in the agricultural sector. Rigorous statistical analysis and development of appropriate bioinformatic methods are crucial to biological sequence analysis in comparative genomics.Read moreRead less