Quantitative dynamics of functional magnetic resonance imaging. By modeling and verifying the dynamics of brain activity and blood flow that underlie functional magnetic resonance imaging (fMRI), this project will yield improved scientific outcomes and imaging sensitivity. The new data analysis techniques and technologies that result will yield potentially patentable intellectual property, and will increase the standing of Australia in this rapidly developing field, including via links being bu ....Quantitative dynamics of functional magnetic resonance imaging. By modeling and verifying the dynamics of brain activity and blood flow that underlie functional magnetic resonance imaging (fMRI), this project will yield improved scientific outcomes and imaging sensitivity. The new data analysis techniques and technologies that result will yield potentially patentable intellectual property, and will increase the standing of Australia in this rapidly developing field, including via links being built to leading international workers. The National Research Priority Goals of Frontier Technologies, Breakthrough Science, Smart Information Use, and Promoting an Innovation Economy will thus be advanced.Read moreRead less
Dynamics of Multiscale Complex Systems. Australia has built a strong position in the science and applications of multiscale phenomena, especially in interdisciplinary fields. The project will advance this position in plasma and biomedical physics by making new discoveries, developing new methods of analyzing such systems, and applying them to achieve practical outcomes. It will underpin Australia's participation in NASA's $600M STEREO mission, and will lead to improved methods and technologies ....Dynamics of Multiscale Complex Systems. Australia has built a strong position in the science and applications of multiscale phenomena, especially in interdisciplinary fields. The project will advance this position in plasma and biomedical physics by making new discoveries, developing new methods of analyzing such systems, and applying them to achieve practical outcomes. It will underpin Australia's participation in NASA's $600M STEREO mission, and will lead to improved methods and technologies for brain function analysis and imaging, which will be commercialized via industry partnerships. It will contribute to national research goals, especially in Breakthrough Science, Frontier Technologies, Smart Information Use, and Promoting Innovation.Read moreRead less
Quantitative Brain Dynamics. This proposal will benefit Australia through unique and fundamental contributions to understanding brain dynamics via the development of innovative approaches and technologies. It will contribute to the national priority goals of Breakthrough Science, Frontier Technologies, and Promoting an Innovation Culture and Economy. Science outcomes will include improved understanding and probing of brain self-organization, dynamics, and function, including unique contributio ....Quantitative Brain Dynamics. This proposal will benefit Australia through unique and fundamental contributions to understanding brain dynamics via the development of innovative approaches and technologies. It will contribute to the national priority goals of Breakthrough Science, Frontier Technologies, and Promoting an Innovation Culture and Economy. Science outcomes will include improved understanding and probing of brain self-organization, dynamics, and function, including unique contributions to understanding alertness and the foundations of vision. These outcomes will be applied to develop new technologies for brain imaging and monitoring.Read moreRead less
Structure and informatics of the genetic code. Recent advances in biotechnology have seen its emergence as a highly
quantitative, numerically-based discipline. To exploit the available
data to the full will require, alongside computing power, new
analytical techniques. This project aims to develop such techniques,
by handling the systematics of the genetic code with methods derived
from theoretical physics and chemistry. Expected outcomes include a
dynamical (quantum field theory) model ....Structure and informatics of the genetic code. Recent advances in biotechnology have seen its emergence as a highly
quantitative, numerically-based discipline. To exploit the available
data to the full will require, alongside computing power, new
analytical techniques. This project aims to develop such techniques,
by handling the systematics of the genetic code with methods derived
from theoretical physics and chemistry. Expected outcomes include a
dynamical (quantum field theory) model of phylogenetic branching,
analyses of nucleic acid structure and content (spin chain models of
RNA binding and of DNA open reading frames), and insights into the
origin of the code itself (via numerical codon similarity measures).
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Intravital super-resolution imaging via Stimulated Emission Depletion microscopy (STED)-microendoscopy. We will develop a new technology to enable the imaging of sub-cellular structures within a biological specimen, with super-resolution. This intravital super-resolution imaging technology will build off world leading techniques to image objects with super-resolution and to perform this within a specimen, with minimal invasion. The broad ramifications of this technology apply to biology, medical ....Intravital super-resolution imaging via Stimulated Emission Depletion microscopy (STED)-microendoscopy. We will develop a new technology to enable the imaging of sub-cellular structures within a biological specimen, with super-resolution. This intravital super-resolution imaging technology will build off world leading techniques to image objects with super-resolution and to perform this within a specimen, with minimal invasion. The broad ramifications of this technology apply to biology, medical science, imaging and sensing. Important applications include the early detection of debilitating diseases and the advancement of understanding of cellular biology. This research will raise Australia's profile as a world leader in science and technology, building on our emerging presence in the biophysical sciences.Read moreRead less
SILICON BASED PHOTONIC CRYSTALS FOR MONITORING BIOMOLECULAR INTERACTIONS. Two great goals of biomolecular science are to monitor biomolecular interactions in real time and with sufficient sensitivity to allow small amounts of biological material to be investigated. The achievement of these goals is limited by the methods of transducing these reactions. The aim of this multidisciplinary proposal is to overcome this limitation by developing photonic devices that exploit the unique properties of na ....SILICON BASED PHOTONIC CRYSTALS FOR MONITORING BIOMOLECULAR INTERACTIONS. Two great goals of biomolecular science are to monitor biomolecular interactions in real time and with sufficient sensitivity to allow small amounts of biological material to be investigated. The achievement of these goals is limited by the methods of transducing these reactions. The aim of this multidisciplinary proposal is to overcome this limitation by developing photonic devices that exploit the unique properties of nanoporous silicon. The hybridisation of DNA will be used as a model biorecognition reaction. Potential applications of these photonic devices are as highly sensitive affinity sensors and as tools for investigating the kinetics of biomolecular interactions.Read moreRead less
Markov invariants and phylogenetic tree reconstruction. The project will assist Australia to progress as an innovator in the production phylogenetic tree reconstruction techniques.
Identifying species is a difficult task with environmental, social and economic benefits to Australia. DNA evidence and phylogenetic methods clearly achieve this task. Conservation of rare species depends upon identification and hence robust phylogenetic analysis. Phylogenetically identifying fish species has econom ....Markov invariants and phylogenetic tree reconstruction. The project will assist Australia to progress as an innovator in the production phylogenetic tree reconstruction techniques.
Identifying species is a difficult task with environmental, social and economic benefits to Australia. DNA evidence and phylogenetic methods clearly achieve this task. Conservation of rare species depends upon identification and hence robust phylogenetic analysis. Phylogenetically identifying fish species has economic importance as different fish species are all managed separately, having different catch limits, catch areas and market values. Using effective phylogenetic methods, epidemiologists can track the spread of a disease through a population. Read moreRead less
Numerical simulation of the fish-like swimming of linked bodies. Although Zoologists have made detailed observations of swimming fish there are still many unanswered questions about how they swim. We do not know how the fins and undulating body work together to produce the high speed of the tuna, or the fast turns of a fish escaping danger. We see dolphins swim through the sea's surface but we don't know if they do that because it is much more efficient. This project is designed to simulate arb ....Numerical simulation of the fish-like swimming of linked bodies. Although Zoologists have made detailed observations of swimming fish there are still many unanswered questions about how they swim. We do not know how the fins and undulating body work together to produce the high speed of the tuna, or the fast turns of a fish escaping danger. We see dolphins swim through the sea's surface but we don't know if they do that because it is much more efficient. This project is designed to simulate arbitrary fish motion and give answers to these and other questions concerning swimming. It may also help humans to swim more efficiently and provide simulation tools for the design of robotic undersea vehicles.Read moreRead less
Electron and Positron Interactions with Bio-Molecules. This program of research will quantify reaction rates and elucidate reaction pathways for a range of important processes in our bodies involving ionising radiation. It will lead to a greatly improved understanding of positron and electron interactions with biological systems, including DNA and its constituent molecules and, through a better understanding of the underlying fundamental interactions, will lay foundations for improvements in te ....Electron and Positron Interactions with Bio-Molecules. This program of research will quantify reaction rates and elucidate reaction pathways for a range of important processes in our bodies involving ionising radiation. It will lead to a greatly improved understanding of positron and electron interactions with biological systems, including DNA and its constituent molecules and, through a better understanding of the underlying fundamental interactions, will lay foundations for improvements in technologies such as PET imaging. Read moreRead less
Parametric Brain Imaging via Modeling and Analysis of Electroencephalographic Signals. Parameters of brain function and physiology will be spatially imaged with high time resolution via their effects on electroencephalographic (EEG) signals, a form of imaging that is impossible with existing methods. This will be achieved by improving existing physiologically-based models of the generation of EEGs and developing analysis tools based on fitting of model predictions to multielectrode EEG data. T ....Parametric Brain Imaging via Modeling and Analysis of Electroencephalographic Signals. Parameters of brain function and physiology will be spatially imaged with high time resolution via their effects on electroencephalographic (EEG) signals, a form of imaging that is impossible with existing methods. This will be achieved by improving existing physiologically-based models of the generation of EEGs and developing analysis tools based on fitting of model predictions to multielectrode EEG data. The results will be used to probe spatiotemporal features of EEGs in normal subjects to explore the underlying fundamental mechanisms and to infer novel parameter variations of practical relevance.Read moreRead less