Understanding somatic mutation in plants: new methods, new software, new data. Somatic mutations accumulate as plants grow, affecting everything from short-term ecological interactions to long-term evolutionary dynamics. These mutations have important consequences for plant industry and conservation, but because they are so hard to measure almost nothing is known about them. This project aims to develop new methods and software to detect, analyse, and compare the genome-wide history of somatic m ....Understanding somatic mutation in plants: new methods, new software, new data. Somatic mutations accumulate as plants grow, affecting everything from short-term ecological interactions to long-term evolutionary dynamics. These mutations have important consequences for plant industry and conservation, but because they are so hard to measure almost nothing is known about them. This project aims to develop new methods and software to detect, analyse, and compare the genome-wide history of somatic mutation in individual plants, providing an unprecedented level of detail into an important but understudied source of biological variation. By applying these methods to an iconic experimental population, This project aims to provide the first insights into the genome-wide causes and consequences of somatic mutation in plants.Read moreRead less
Visual Analytics for Next Generation Sequencing. Next-generation sequencing technologies have brought a revolution in biology and healthcare, while taxing the ability of scientists and clinicians to identify and process relevant data, to make sense of it all and communicate it to others in a concise and meaningful way. This project aims to tackle this problem through fundamentally new approaches to data selection and visualisation at very large scale, actively encoding for insight into underlyin ....Visual Analytics for Next Generation Sequencing. Next-generation sequencing technologies have brought a revolution in biology and healthcare, while taxing the ability of scientists and clinicians to identify and process relevant data, to make sense of it all and communicate it to others in a concise and meaningful way. This project aims to tackle this problem through fundamentally new approaches to data selection and visualisation at very large scale, actively encoding for insight into underlying biological and biomedical processes, bringing sustainable discovery of new relationships and variations within the data. The project aims to support new approaches to medical diagnosis and treatment, and offer crucial lessons to address the broader challenge of understanding large, complex data sets.Read moreRead less
Learning Software Security Analysers with Imperfect Data. This project aims to systematically investigate next-generation learning-based software security analysis to detect vulnerabilities in real-world large-scale software. The expected learning-based foundation will support the handling of imperfect data in order to provide a precise, scalable and adaptive security analysis of the critical software components, thus capturing important security vulnerabilities missed by existing approaches. Th ....Learning Software Security Analysers with Imperfect Data. This project aims to systematically investigate next-generation learning-based software security analysis to detect vulnerabilities in real-world large-scale software. The expected learning-based foundation will support the handling of imperfect data in order to provide a precise, scalable and adaptive security analysis of the critical software components, thus capturing important security vulnerabilities missed by existing approaches. The success of this project will further enhance the international competitiveness of Australian research in this important field and will benefit any Australian industry and business where software systems are deeply-rooted, such as transportation, smart homes, medical devices, defence and finance.Read moreRead less
How novel ribosomal RNA gene repeat variants drive cellular function. The hundreds of ribosomal RNA gene repeat copies are a remarkable part of our genomes, as they encode the machinery responsible for all cellular protein synthesis and shape the structure of the nucleus. However, due to their high degree of sequence similarity, they still have not been assembled into the human genome reference. This project will resolve this impasse and furthermore uncover the functional impacts of a newly iden ....How novel ribosomal RNA gene repeat variants drive cellular function. The hundreds of ribosomal RNA gene repeat copies are a remarkable part of our genomes, as they encode the machinery responsible for all cellular protein synthesis and shape the structure of the nucleus. However, due to their high degree of sequence similarity, they still have not been assembled into the human genome reference. This project will resolve this impasse and furthermore uncover the functional impacts of a newly identified molecular diversity in the ribosomal RNA gene repeats. Outcomes include new paradigms for how the ribosomal RNA gene repeats drive protein synthesis and genome structure, and a blueprint to develop novel genomics applications for human health, biotechnology, and agriculture.Read moreRead less
Preparing Australia For Genomic Medicine: A Proposal By The Australian Genomics Health Alliance
Funder
National Health and Medical Research Council
Funding Amount
$25,000,000.00
Summary
The sequencing of the human genome brings the possibility of more accurate identification of the underlying basis of many diseases. This technology has moved so rapidly, however, that clinical access has been limited. In this application, a national alliance of clinicians, researchers, health economists and policymakers will evaluate the case for clinical genomics across inherited disease and cancer, determine how best to deliver this to the patient and train a capable workforce.
Discovery Early Career Researcher Award - Grant ID: DE170101081
Funder
Australian Research Council
Funding Amount
$360,000.00
Summary
Adaptive value-flow analysis to improve code reliability and security. This project aims to develop client-driven adaptive value-flow analysis to detect software bugs in system software written in the C/C++ programme language. Static analysis tools for automated code inspections can benefit software developers, but are imprecise, inefficient and not user-friendly for analysing real-world industrial-sized software. The project will investigate static, dynamic and user-guided value-flow analysis t ....Adaptive value-flow analysis to improve code reliability and security. This project aims to develop client-driven adaptive value-flow analysis to detect software bugs in system software written in the C/C++ programme language. Static analysis tools for automated code inspections can benefit software developers, but are imprecise, inefficient and not user-friendly for analysing real-world industrial-sized software. The project will investigate static, dynamic and user-guided value-flow analysis to efficiently and precisely analyse large-scale programs according to clients’ needs, thereby allowing compilers to generate safe, reliable and secure code. This project is expected to advance value-flow analysis for industrial-sized software, improve software reliability and security, and benefit Australian software systems and industries.Read moreRead less
Linkage Infrastructure, Equipment And Facilities - Grant ID: LE0347131
Funder
Australian Research Council
Funding Amount
$115,490.00
Summary
Intelligent Computer System to Access Information Directly from the Brain Using High Resolution Electroencephalography and Repetitive Transcranial Magnetic Stimulation. The ambitious aim of this project is to create a novel intelligent computer system which accesss information from the brain. To do this we use repetitive Transcranial Magnetic Stimulation and high resolution Electroencephalography.
Learning to Pinpoint Emerging Software Vulnerabilities. This project aims to develop learning-based software vulnerability detection techniques to improve the reliability and security of modern software systems. The existing techniques relying on conventional yet rigid software analysis and testing techniques are ineffective and/or inefficient when detecting a wide variety of emerging software vulnerabilities. The outcomes of this project will be a deep-learning-based detection approach and an ....Learning to Pinpoint Emerging Software Vulnerabilities. This project aims to develop learning-based software vulnerability detection techniques to improve the reliability and security of modern software systems. The existing techniques relying on conventional yet rigid software analysis and testing techniques are ineffective and/or inefficient when detecting a wide variety of emerging software vulnerabilities. The outcomes of this project will be a deep-learning-based detection approach and an open-source tool that can capture precision correlations between deep code features and diverse vulnerabilities to pinpoint emerging vulnerabilities without the need for bug specifications. Significant benefits include greatly improved quality, reliability and security for modern software systems.Read moreRead less
Secure and Resistant Blockchain for Financial and Business Applications. The aim of this project is to develop a practical secure blockchain technology for the booming applications in finance and business. This project expects to address the leading security threats to the current blockchain applications. The expected outcome is an executable secure and resistant blockchain prototype through the integration of the latest developed and customized techniques. The success of the project will dramat ....Secure and Resistant Blockchain for Financial and Business Applications. The aim of this project is to develop a practical secure blockchain technology for the booming applications in finance and business. This project expects to address the leading security threats to the current blockchain applications. The expected outcome is an executable secure and resistant blockchain prototype through the integration of the latest developed and customized techniques. The success of the project will dramatically benefit Australian people and government, especially for the Australian ICT industry for commercializing the research outputs. Read moreRead less
User-task co-adaptation for effective interactive simulation environments. This project aims to deliver smart interactive simulation environments in which users and simulation tasks work together. This project aims to create novel adaptive algorithms to automatically discover those user and task features that vary together to smartly adapt users and simulation tasks to work together harmoniously, seamlessly and effectively. Interactive simulation environments are the backbone for evaluating conc ....User-task co-adaptation for effective interactive simulation environments. This project aims to deliver smart interactive simulation environments in which users and simulation tasks work together. This project aims to create novel adaptive algorithms to automatically discover those user and task features that vary together to smartly adapt users and simulation tasks to work together harmoniously, seamlessly and effectively. Interactive simulation environments are the backbone for evaluating concepts, designs, products and advanced training systems in industry and government organisations. By bringing the user naturally inside the simulation as a task's component, users can improve their experience while task performance is simultaneously optimised. Intended outcomes include novel dynamic user-task profiling algorithms and new adaptive algorithms for user-task co-adaptation. Practical outcomes may include robust and highly effective simulation environments.Read moreRead less