Statistical Methods for Discovering Ribonucleic acids (RNAs) contributing to human diseases and phenotypes. Identifying the causative genetic factors involved in quantitative phenotypes and diseases is a major goal of biology in the 21st century and beyond. A crucial step towards this goal is identifying and classifying the functional non-protein-coding Ribonucleic acids (RNAs) encoded in the human genome. This project will make major contributions to international efforts in this area by identi ....Statistical Methods for Discovering Ribonucleic acids (RNAs) contributing to human diseases and phenotypes. Identifying the causative genetic factors involved in quantitative phenotypes and diseases is a major goal of biology in the 21st century and beyond. A crucial step towards this goal is identifying and classifying the functional non-protein-coding Ribonucleic acids (RNAs) encoded in the human genome. This project will make major contributions to international efforts in this area by identifying RNA molecules that contribute to quantitative phenotypes including susceptibility to disease. As such, it will directly benefit fundamental science via the discovery and classification of new molecules. Indirectly, it will lead to breakthroughs in biology, and consequently to major medical and pharmaceutical advances in the diagnosis and treatment of genetic disease.Read moreRead less
Advances in data integration modelling for infectious disease response. This project aims to develop powerful mathematical frameworks that integrate data from multiple sources to facilitate informed decisions in response to the threat of present, and future, infectious diseases. The project expects to generate new knowledge in mathematics by advancing the tools for incorporating multiple data sources into models of infectious diseases. The expected outcomes include enhanced capacity to predict s ....Advances in data integration modelling for infectious disease response. This project aims to develop powerful mathematical frameworks that integrate data from multiple sources to facilitate informed decisions in response to the threat of present, and future, infectious diseases. The project expects to generate new knowledge in mathematics by advancing the tools for incorporating multiple data sources into models of infectious diseases. The expected outcomes include enhanced capacity to predict spatiotemporal changes in transmission of infectious diseases. This project should provide significant benefits in the advancement of modelling techniques broadly applicable to infectious disease settings, which will be demonstrated for antimalarial drug resistance – a major threat to malaria elimination.
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Optimising progress towards elimination of malaria. The project aims to advance mathematical knowledge by developing novel tools appropriate for modelling disease elimination. We will apply these new mathematical tools to the significant problem of malaria elimination in Vietnam. The expected outcomes are new tools for modelling disease elimination on a fine spatial resolution with heterogeneities in individual patient characteristics, calibrating models to household level data on disease transm ....Optimising progress towards elimination of malaria. The project aims to advance mathematical knowledge by developing novel tools appropriate for modelling disease elimination. We will apply these new mathematical tools to the significant problem of malaria elimination in Vietnam. The expected outcomes are new tools for modelling disease elimination on a fine spatial resolution with heterogeneities in individual patient characteristics, calibrating models to household level data on disease transmission and designing intervention strategies for maximum effect on disease transmission. The innovative combination of modelling, inference and optimisation ensures that the mathematical methods developed will be broadly applicable to modelling elimination strategies for other infectious diseases.
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Australian Laureate Fellowships - Grant ID: FL140100012
Funder
Australian Research Council
Funding Amount
$2,830,000.00
Summary
Stress-testing algorithms: generating new test instances to elicit insights. Stress-testing algorithms: generating new test instances to elicit insights. This project aims to develop a new paradigm in algorithm testing, creating novel test instances and tools to elicit insights into algorithm strengths and weaknesses. Such advances are urgently needed to support good research practice in academia, and to avoid disasters when deploying algorithms in practice. Extending our recent work in algorith ....Stress-testing algorithms: generating new test instances to elicit insights. Stress-testing algorithms: generating new test instances to elicit insights. This project aims to develop a new paradigm in algorithm testing, creating novel test instances and tools to elicit insights into algorithm strengths and weaknesses. Such advances are urgently needed to support good research practice in academia, and to avoid disasters when deploying algorithms in practice. Extending our recent work in algorithm testing for combinatorial optimisation, described as 'ground-breaking,' this project aims to tackle the challenges needed to generalise the paradigm to other fields such as machine learning, forecasting, software testing, and other branches of optimisation. An online repository of test instances and tools aim to provide a valuable resource to improve research practice and support new insights into algorithm performance.Read moreRead less
Maximizing Dimensional Efficiency With Minimal Cardinality Pattern Combinations. Making optimal use of dimensional capacity is often fundamental to the efficiency of processes in science and industry. Many important applications use combinations of patterns to achieve this. For example, in paper and in steel manufacturing, reels are divided lengthwise into cutting patterns, combined so as to minimize waste. In medicine, radiation patterns are combined to effectively treat cancerous tumours. ....Maximizing Dimensional Efficiency With Minimal Cardinality Pattern Combinations. Making optimal use of dimensional capacity is often fundamental to the efficiency of processes in science and industry. Many important applications use combinations of patterns to achieve this. For example, in paper and in steel manufacturing, reels are divided lengthwise into cutting patterns, combined so as to minimize waste. In medicine, radiation patterns are combined to effectively treat cancerous tumours. By addressing the common mathematical structure underlying pattern combination, this project will account for a hitherto neglected critical factor - the solution cardinality - making fully optimized solutions available for the first time to many applications in science and industry.Read moreRead less
Faster, cheaper, better: mathematical advances for improved design and scheduling of robotic instrumentation. This project extends previous research addressing mathematical challenges in the optimal design and scheduling of robotic instrumentation. The Partner Organisation manufactures instruments for cancer diagnostics, and designs instruments that need to produce rapid, high-quality results, at a reasonable cost in a competitive market. It is intended that powerful new scheduling algorithms wi ....Faster, cheaper, better: mathematical advances for improved design and scheduling of robotic instrumentation. This project extends previous research addressing mathematical challenges in the optimal design and scheduling of robotic instrumentation. The Partner Organisation manufactures instruments for cancer diagnostics, and designs instruments that need to produce rapid, high-quality results, at a reasonable cost in a competitive market. It is intended that powerful new scheduling algorithms will be devised to handle their complex problem, which is more challenging than standard problems. The developed methodologies aim to reduce the product development cycle and boost the competitiveness of Australian manufacturers. In addition, new theoretical and algorithmic contributions aim to enable improved scheduling in other application areas.Read moreRead less
Creating subject-specific mathematical models to understand the brain. This project aims to develop a mathematical framework that bridges the different scales of brain activities to provide a new tool for understanding the brain. Methods will be developed that unify individual neural activity with large scale brain activity. The approach will be validated by comparing predictions of interconnected models of neural populations (called mean-field models) to experimental data. The creation of subje ....Creating subject-specific mathematical models to understand the brain. This project aims to develop a mathematical framework that bridges the different scales of brain activities to provide a new tool for understanding the brain. Methods will be developed that unify individual neural activity with large scale brain activity. The approach will be validated by comparing predictions of interconnected models of neural populations (called mean-field models) to experimental data. The creation of subject-specific models from data is important, as there is large variability in neural circuits between individuals despite seemingly similar network activity. The intended outcome is new insights into the processes that govern brain function and methods for improving functional imaging of, and interfacing to, the brain.Read moreRead less
Performance Evaluation Methodologies for the Optical Internet. It will be important to Australia to be an early adopter of a next-generation Internet technology not only to ensure that the country retains its place in the world economic community of but also to ensure that its industries and citizens have access to new technologies. Techniques and methodologies emerging from this project will enable the design of Australia's future optical Internet.
The project will enable strategic decisions ....Performance Evaluation Methodologies for the Optical Internet. It will be important to Australia to be an early adopter of a next-generation Internet technology not only to ensure that the country retains its place in the world economic community of but also to ensure that its industries and citizens have access to new technologies. Techniques and methodologies emerging from this project will enable the design of Australia's future optical Internet.
The project will enable strategic decisions on the viability of new technologies, and as a result Australian service providers will have better and cheaper networks, and Australian users will enjoy better services at a lower cost.
The project will enhance the Australian knowledge base, skills base in the area of teletraffic and optical networking.
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How calcium makes the heart grow. This project aims to develop a mathematical model of calcium signalling in heart cells to understand how calcium makes the heart grow. Our hearts grow to adapt to long-term changes, such as during development and in pregnancy or heart disease. Biochemical reactions involving calcium control the growth of heart cells and heart cells also use calcium signalling to trigger contraction with each beat. How calcium controls the heartbeat and regulates cell growth is u ....How calcium makes the heart grow. This project aims to develop a mathematical model of calcium signalling in heart cells to understand how calcium makes the heart grow. Our hearts grow to adapt to long-term changes, such as during development and in pregnancy or heart disease. Biochemical reactions involving calcium control the growth of heart cells and heart cells also use calcium signalling to trigger contraction with each beat. How calcium controls the heartbeat and regulates cell growth is unknown. This project will develop a new mathematical model of calcium signalling in heart cells to understand important cellular adaption processes. This knowledge will lead to the ability to independently control cellular pathways mediated by calcium, opening new avenues in biotechnology and biomedicine.Read moreRead less